RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 LRP5O75197 1615 aa19.39■□□□□ 0.69
VRK3-206ENST00000594090 GNAT3A8MTJ3 354 aa19.39■□□□□ 0.69
VRK3-206ENST00000594090 NFATC2IPQ8NCF5 419 aa19.39■□□□□ 0.69
VRK3-206ENST00000594090 SLC52A2Q9HAB3 445 aa19.38■□□□□ 0.69
VRK3-206ENST00000594090 ZNF831Q5JPB2 1677 aa19.38■□□□□ 0.69
VRK3-206ENST00000594090 LOC102724428A0A0B4J2F2 783 aa19.37■□□□□ 0.69
VRK3-206ENST00000594090 SIK1P57059 783 aa19.37■□□□□ 0.69
VRK3-206ENST00000594090 AKT1S1Q96B36 256 aa19.37■□□□□ 0.69
VRK3-206ENST00000594090 C4BP0C0L5 1744 aa19.37■□□□□ 0.69
VRK3-206ENST00000594090 SIPA1L3O60292 1781 aaPredicted RBP19.36■□□□□ 0.69
VRK3-206ENST00000594090 PLEKHF1Q96S99 279 aa19.36■□□□□ 0.69
VRK3-206ENST00000594090 NEFMP07197 916 aa19.34■□□□□ 0.69
VRK3-206ENST00000594090 IL17REQ8NFR9 667 aa19.34■□□□□ 0.69
VRK3-206ENST00000594090 PDGFDQ9GZP0 370 aaPredicted RBP19.34■□□□□ 0.69
VRK3-206ENST00000594090 PNNQ9H307 717 aaKnown RBP19.34■□□□□ 0.69
VRK3-206ENST00000594090 CEMIPQ8WUJ3 1361 aa19.34■□□□□ 0.69
VRK3-206ENST00000594090 DLG5Q8TDM6 1919 aa19.34■□□□□ 0.69
VRK3-206ENST00000594090 HMGB2P26583 209 aaKnown RBP19.34■□□□□ 0.69
VRK3-206ENST00000594090 CICQ96RK0 1608 aaPredicted RBP19.33■□□□□ 0.69
VRK3-206ENST00000594090 SRCAPQ6ZRS2 3230 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 COL5A3P25940 1745 aaPredicted RBP19.32■□□□□ 0.68
VRK3-206ENST00000594090 MAPK8IP3Q9UPT6 1336 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 UBR2Q8IWV8 1755 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 ANP32CO43423 234 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 ATP6V1AP38606 617 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 TJP1Q07157 1748 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 ITPK1Q13572 414 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 WDR43Q15061 677 aaKnown RBP eCLIP19.32■□□□□ 0.68
VRK3-206ENST00000594090 SLC4A9Q96Q91 983 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 RBM42Q9BTD8 480 aaKnown RBP19.32■□□□□ 0.68
VRK3-206ENST00000594090 TFCP2L1Q9NZI6 479 aa19.32■□□□□ 0.68
VRK3-206ENST00000594090 KCPQ6ZWJ8 1503 aa19.31■□□□□ 0.68
VRK3-206ENST00000594090 TEFQ10587 303 aa19.31■□□□□ 0.68
VRK3-206ENST00000594090 LINC00116Q8NCU8 138 aa19.31■□□□□ 0.68
VRK3-206ENST00000594090 PNPLA7Q6ZV29 1317 aa19.3■□□□□ 0.68
VRK3-206ENST00000594090 PTCD1O75127 700 aaKnown RBP19.3■□□□□ 0.68
VRK3-206ENST00000594090 RTF1Q92541 710 aaKnown RBP19.3■□□□□ 0.68
VRK3-206ENST00000594090 UBR3Q6ZT12 1888 aa19.3■□□□□ 0.68
VRK3-206ENST00000594090 HTATSF1O43719 755 aaKnown RBP19.29■□□□□ 0.68
VRK3-206ENST00000594090 SLC39A6Q13433 755 aa19.29■□□□□ 0.68
VRK3-206ENST00000594090 NFE2L2Q16236 605 aa19.29■□□□□ 0.68
VRK3-206ENST00000594090 MCM10Q7L590 875 aa19.28■□□□□ 0.68
VRK3-206ENST00000594090 ZBTB7AO95365 584 aa19.27■□□□□ 0.68
VRK3-206ENST00000594090 DCTN1Q14203 1278 aa19.27■□□□□ 0.68
VRK3-206ENST00000594090 AK7Q96M32 723 aa19.27■□□□□ 0.68
VRK3-206ENST00000594090 ADAMTS8Q9UP79 889 aa19.27■□□□□ 0.68
VRK3-206ENST00000594090 CCDC184Q52MB2 194 aa19.26■□□□□ 0.67
VRK3-206ENST00000594090 CCDC146Q8IYE0 955 aa19.26■□□□□ 0.67
VRK3-206ENST00000594090 SPON1Q9HCB6 807 aa19.26■□□□□ 0.67
VRK3-206ENST00000594090 AMIGO3Q86WK7 504 aa19.25■□□□□ 0.67
VRK3-206ENST00000594090 TTC5Q8N0Z6 440 aa19.25■□□□□ 0.67
VRK3-206ENST00000594090 MTFR1LQ9H019 292 aa19.25■□□□□ 0.67
VRK3-206ENST00000594090 CNTNAP4Q9C0A0 1308 aa19.24■□□□□ 0.67
VRK3-206ENST00000594090 ZNF790Q6PG37 636 aa19.24■□□□□ 0.67
VRK3-206ENST00000594090 COL23A1Q86Y22 540 aaPredicted RBP19.24■□□□□ 0.67
VRK3-206ENST00000594090 RUNDC1Q96C34 613 aa19.24■□□□□ 0.67
VRK3-206ENST00000594090 COL24A1Q17RW2 1714 aa19.23■□□□□ 0.67
VRK3-206ENST00000594090 MYH14Q7Z406 1995 aaKnown RBP19.23■□□□□ 0.67
VRK3-206ENST00000594090 BTBD11A6QL63 1104 aa19.23■□□□□ 0.67
VRK3-206ENST00000594090 GNPATO15228 680 aa19.23■□□□□ 0.67
VRK3-206ENST00000594090 SLC16A10Q8TF71 515 aa19.23■□□□□ 0.67
VRK3-206ENST00000594090 SSFA2P28290 1259 aa19.22■□□□□ 0.67
VRK3-206ENST00000594090 TMPOP42166 694 aaKnown RBP19.22■□□□□ 0.67
VRK3-206ENST00000594090 RC3H1Q5TC82 1133 aaKnown RBP19.22■□□□□ 0.67
VRK3-206ENST00000594090 FLAD1Q8NFF5 587 aa19.22■□□□□ 0.67
VRK3-206ENST00000594090 ATF5Q9Y2D1 282 aaPredicted RBP19.22■□□□□ 0.67
VRK3-206ENST00000594090 KDM3BQ7LBC6 1761 aa19.21■□□□□ 0.67
VRK3-206ENST00000594090 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.21■□□□□ 0.67
VRK3-206ENST00000594090 PHF14O94880 888 aa19.21■□□□□ 0.67
VRK3-206ENST00000594090 RIPK4P57078 832 aa19.21■□□□□ 0.67
VRK3-206ENST00000594090 SMIM5Q71RC9 77 aa19.21■□□□□ 0.67
VRK3-206ENST00000594090 DNAJC10Q8IXB1 793 aa19.21■□□□□ 0.67
VRK3-206ENST00000594090 VSIG10Q8N0Z9 540 aa19.21■□□□□ 0.67
VRK3-206ENST00000594090 ZNF496Q96IT1 587 aaPredicted RBP19.21■□□□□ 0.67
VRK3-206ENST00000594090 HEG1Q9ULI3 1381 aa19.21■□□□□ 0.67
VRK3-206ENST00000594090 MSH5O43196 834 aa19.2■□□□□ 0.66
VRK3-206ENST00000594090 PTGER2P43116 358 aa19.2■□□□□ 0.66
VRK3-206ENST00000594090 CRKLP46109 303 aaKnown RBP19.2■□□□□ 0.66
VRK3-206ENST00000594090 THUMPD2Q9BTF0 503 aaKnown RBP19.2■□□□□ 0.66
VRK3-206ENST00000594090 MRS2Q9HD23 443 aa19.2■□□□□ 0.66
VRK3-206ENST00000594090 KCNQ3O43525 872 aa19.19■□□□□ 0.66
VRK3-206ENST00000594090 RRP7AQ9Y3A4 280 aaKnown RBP19.19■□□□□ 0.66
VRK3-206ENST00000594090 C4AP0C0L4 1744 aa19.19■□□□□ 0.66
VRK3-206ENST00000594090 LMOD3Q0VAK6 560 aa19.18■□□□□ 0.66
VRK3-206ENST00000594090 TAF7Q15545 349 aaPredicted RBP19.18■□□□□ 0.66
VRK3-206ENST00000594090 FMNL2Q96PY5 1086 aa19.18■□□□□ 0.66
VRK3-206ENST00000594090 SGIP1Q9BQI5 828 aa19.18■□□□□ 0.66
VRK3-206ENST00000594090 RTCBQ9Y3I0 505 aaKnown RBP19.18■□□□□ 0.66
VRK3-206ENST00000594090 RPS6KA4O75676 772 aa19.17■□□□□ 0.66
VRK3-206ENST00000594090 CYP19A1P11511 503 aaPredicted RBP19.17■□□□□ 0.66
VRK3-206ENST00000594090 NEUROD2Q15784 382 aa19.17■□□□□ 0.66
VRK3-206ENST00000594090 INTS5Q6P9B9 1019 aaKnown RBP19.17■□□□□ 0.66
VRK3-206ENST00000594090 PNISRQ8TF01 805 aaKnown RBP19.17■□□□□ 0.66
VRK3-206ENST00000594090 PPP1R1BQ9UD71 204 aaPredicted RBP19.17■□□□□ 0.66
VRK3-206ENST00000594090 ADRA2BP18089 450 aa19.16■□□□□ 0.66
VRK3-206ENST00000594090 CCDC87Q9NVE4 849 aa19.16■□□□□ 0.66
VRK3-206ENST00000594090 MIS18AQ9NYP9 233 aa19.15■□□□□ 0.66
VRK3-206ENST00000594090 TRAPPC3LQ5T215 181 aa19.14■□□□□ 0.65
VRK3-206ENST00000594090 MSL1Q68DK7 614 aa19.14■□□□□ 0.65
VRK3-206ENST00000594090 TRIM35Q9UPQ4 493 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms