RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NFATC2IPQ8NCF5 419 aa20.52■□□□□ 0.88
TRIM28-203ENST00000593582 FHDC1Q9C0D6 1143 aaPredicted RBP20.52■□□□□ 0.88
TRIM28-203ENST00000593582 TUBGCP6Q96RT7 1819 aa20.51■□□□□ 0.87
TRIM28-203ENST00000593582 C4BP0C0L5 1744 aa20.51■□□□□ 0.87
TRIM28-203ENST00000593582 PPP2R1AP30153 589 aa20.51■□□□□ 0.87
TRIM28-203ENST00000593582 ITPK1Q13572 414 aa20.51■□□□□ 0.87
TRIM28-203ENST00000593582 LINC00116Q8NCU8 138 aa20.51■□□□□ 0.87
TRIM28-203ENST00000593582 RBM42Q9BTD8 480 aaKnown RBP20.51■□□□□ 0.87
TRIM28-203ENST00000593582 TAF1LQ8IZX4 1826 aa20.5■□□□□ 0.87
TRIM28-203ENST00000593582 MTHFSDQ2M296 383 aaKnown RBP20.5■□□□□ 0.87
TRIM28-203ENST00000593582 SYT17Q9BSW7 474 aa20.5■□□□□ 0.87
TRIM28-203ENST00000593582 NUDCQ9Y266 331 aa20.49■□□□□ 0.87
TRIM28-203ENST00000593582 PHF14O94880 888 aa20.48■□□□□ 0.87
TRIM28-203ENST00000593582 LGR6Q9HBX8 967 aa20.48■□□□□ 0.87
TRIM28-203ENST00000593582 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.47■□□□□ 0.87
TRIM28-203ENST00000593582 GNPATO15228 680 aa20.47■□□□□ 0.87
TRIM28-203ENST00000593582 SSFA2P28290 1259 aa20.47■□□□□ 0.87
TRIM28-203ENST00000593582 SLC52A2Q9HAB3 445 aa20.47■□□□□ 0.87
TRIM28-203ENST00000593582 RNMTO43148 476 aaKnown RBP20.46■□□□□ 0.87
TRIM28-203ENST00000593582 PTCD1O75127 700 aaKnown RBP20.46■□□□□ 0.87
TRIM28-203ENST00000593582 MSL1Q68DK7 614 aa20.46■□□□□ 0.87
TRIM28-203ENST00000593582 SLC4A9Q96Q91 983 aa20.46■□□□□ 0.87
TRIM28-203ENST00000593582 UTRNP46939 3433 aa20.46■□□□□ 0.87
TRIM28-203ENST00000593582 MAP3K5Q99683 1374 aa20.46■□□□□ 0.87
TRIM28-203ENST00000593582 AMIGO3Q86WK7 504 aa20.45■□□□□ 0.86
TRIM28-203ENST00000593582 GAS2L2Q8NHY3 880 aa20.45■□□□□ 0.86
TRIM28-203ENST00000593582 KLHL34Q8N239 644 aa20.44■□□□□ 0.86
TRIM28-203ENST00000593582 SCN11AQ9UI33 1791 aa20.44■□□□□ 0.86
TRIM28-203ENST00000593582 U2AF1L5P0DN76 240 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-203ENST00000593582 U2AF1Q01081 240 aaKnown RBP eCLIP20.43■□□□□ 0.86
TRIM28-203ENST00000593582 SMIM5Q71RC9 77 aa20.43■□□□□ 0.86
TRIM28-203ENST00000593582 RTCBQ9Y3I0 505 aaKnown RBP20.43■□□□□ 0.86
TRIM28-203ENST00000593582 COL24A1Q17RW2 1714 aa20.42■□□□□ 0.86
TRIM28-203ENST00000593582 PRKAR2BP31323 418 aa20.42■□□□□ 0.86
TRIM28-203ENST00000593582 RC3H1Q5TC82 1133 aaKnown RBP20.42■□□□□ 0.86
TRIM28-203ENST00000593582 RSPH6AQ9H0K4 717 aa20.42■□□□□ 0.86
TRIM28-203ENST00000593582 ZNF831Q5JPB2 1677 aa20.42■□□□□ 0.86
TRIM28-203ENST00000593582 UBR3Q6ZT12 1888 aa20.41■□□□□ 0.86
TRIM28-203ENST00000593582 GNAT3A8MTJ3 354 aa20.41■□□□□ 0.86
TRIM28-203ENST00000593582 CNTNAP4Q9C0A0 1308 aa20.41■□□□□ 0.86
TRIM28-203ENST00000593582 MRC1P22897 1456 aa20.41■□□□□ 0.86
TRIM28-203ENST00000593582 FCHSD2O94868 740 aa20.4■□□□□ 0.86
TRIM28-203ENST00000593582 GOLGB1Q14789 3259 aaKnown RBP20.4■□□□□ 0.86
TRIM28-203ENST00000593582 TRAPPC3LQ5T215 181 aa20.4■□□□□ 0.86
TRIM28-203ENST00000593582 PHACTR3Q96KR7 559 aa20.39■□□□□ 0.85
TRIM28-203ENST00000593582 ADRA2BP18089 450 aa20.38■□□□□ 0.85
TRIM28-203ENST00000593582 TEFQ10587 303 aa20.38■□□□□ 0.85
TRIM28-203ENST00000593582 DDX10Q13206 875 aaKnown RBP20.38■□□□□ 0.85
TRIM28-203ENST00000593582 SLC39A6Q13433 755 aa20.38■□□□□ 0.85
TRIM28-203ENST00000593582 RPS6KA4O75676 772 aa20.37■□□□□ 0.85
TRIM28-203ENST00000593582 ADAMTS7Q9UKP4 1686 aa20.37■□□□□ 0.85
TRIM28-203ENST00000593582 CRKLP46109 303 aaKnown RBP20.36■□□□□ 0.85
TRIM28-203ENST00000593582 RALBP1Q15311 655 aa20.36■□□□□ 0.85
TRIM28-203ENST00000593582 IL17REQ8NFR9 667 aa20.36■□□□□ 0.85
TRIM28-203ENST00000593582 COL5A3P25940 1745 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-203ENST00000593582 RFC4P35249 363 aa20.35■□□□□ 0.85
TRIM28-203ENST00000593582 TTC5Q8N0Z6 440 aa20.35■□□□□ 0.85
TRIM28-203ENST00000593582 ARHGEF1Q92888 912 aaKnown RBP20.35■□□□□ 0.85
TRIM28-203ENST00000593582 DNAJC10Q8IXB1 793 aa20.34■□□□□ 0.85
TRIM28-203ENST00000593582 CD2APQ9Y5K6 639 aa20.34■□□□□ 0.85
TRIM28-203ENST00000593582 NEFMP07197 916 aa20.33■□□□□ 0.85
TRIM28-203ENST00000593582 YY1P25490 414 aa20.33■□□□□ 0.85
TRIM28-203ENST00000593582 GPR162Q16538 588 aa20.33■□□□□ 0.85
TRIM28-203ENST00000593582 NLGN2Q8NFZ4 835 aa20.33■□□□□ 0.85
TRIM28-203ENST00000593582 RTF1Q92541 710 aaKnown RBP20.33■□□□□ 0.85
TRIM28-203ENST00000593582 VSIG10Q8N0Z9 540 aa20.32■□□□□ 0.84
TRIM28-203ENST00000593582 NLGN1Q8N2Q7 840 aa20.32■□□□□ 0.84
TRIM28-203ENST00000593582 CEMIPQ8WUJ3 1361 aa20.32■□□□□ 0.84
TRIM28-203ENST00000593582 CICQ96RK0 1608 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-203ENST00000593582 ZEB1P37275 1124 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-203ENST00000593582 INTS5Q6P9B9 1019 aaKnown RBP20.31■□□□□ 0.84
TRIM28-203ENST00000593582 ZNF790Q6PG37 636 aa20.31■□□□□ 0.84
TRIM28-203ENST00000593582 CCDC87Q9NVE4 849 aa20.31■□□□□ 0.84
TRIM28-203ENST00000593582 VIRMAQ69YN4 1812 aaKnown RBP20.31■□□□□ 0.84
TRIM28-203ENST00000593582 KCPQ6ZWJ8 1503 aa20.31■□□□□ 0.84
TRIM28-203ENST00000593582 TJP1Q07157 1748 aa20.3■□□□□ 0.84
TRIM28-203ENST00000593582 MMP10P09238 476 aa20.3■□□□□ 0.84
TRIM28-203ENST00000593582 CYP19A1P11511 503 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-203ENST00000593582 PELP1Q8IZL8 1130 aaKnown RBP20.3■□□□□ 0.84
TRIM28-203ENST00000593582 MYH14Q7Z406 1995 aaKnown RBP20.28■□□□□ 0.84
TRIM28-203ENST00000593582 BTBD11A6QL63 1104 aa20.28■□□□□ 0.84
TRIM28-203ENST00000593582 HTATSF1O43719 755 aaKnown RBP20.28■□□□□ 0.84
TRIM28-203ENST00000593582 GYS1P13807 737 aa20.28■□□□□ 0.84
TRIM28-203ENST00000593582 ZNF496Q96IT1 587 aaPredicted RBP20.28■□□□□ 0.84
TRIM28-203ENST00000593582 PNNQ9H307 717 aaKnown RBP20.28■□□□□ 0.84
TRIM28-203ENST00000593582 STARD3NLO95772 234 aa20.27■□□□□ 0.84
TRIM28-203ENST00000593582 MCM10Q7L590 875 aa20.27■□□□□ 0.84
TRIM28-203ENST00000593582 FMNL2Q96PY5 1086 aa20.26■□□□□ 0.83
TRIM28-203ENST00000593582 TEX13AQ9BXU3 409 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-203ENST00000593582 SOS1Q07889 1333 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-203ENST00000593582 USP42Q9H9J4 1324 aaKnown RBP20.26■□□□□ 0.83
TRIM28-203ENST00000593582 HEG1Q9ULI3 1381 aa20.25■□□□□ 0.83
TRIM28-203ENST00000593582 ZPR1O75312 459 aa20.25■□□□□ 0.83
TRIM28-203ENST00000593582 SRP68Q9UHB9 627 aaKnown RBP20.25■□□□□ 0.83
TRIM28-203ENST00000593582 ZBTB1Q9Y2K1 713 aa20.25■□□□□ 0.83
TRIM28-203ENST00000593582 UBR2Q8IWV8 1755 aa20.25■□□□□ 0.83
TRIM28-203ENST00000593582 MYBBP1AQ9BQG0 1328 aaKnown RBP20.25■□□□□ 0.83
TRIM28-203ENST00000593582 DCTN1Q14203 1278 aa20.24■□□□□ 0.83
TRIM28-203ENST00000593582 PLEKHF1Q96S99 279 aa20.24■□□□□ 0.83
TRIM28-203ENST00000593582 PARP3Q9Y6F1 533 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms