RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 ARXQ96QS3 562 aa17.56■□□□□ 0.4
VMP1-217ENST00000593168 SPINK5Q9NQ38 1064 aaPredicted RBP17.56■□□□□ 0.4
VMP1-217ENST00000593168 QSER1Q2KHR3 1735 aa17.55■□□□□ 0.4
VMP1-217ENST00000593168 CALD1Q05682 793 aaKnown RBP17.55■□□□□ 0.4
VMP1-217ENST00000593168 MTHFSDQ2M296 383 aaKnown RBP17.55■□□□□ 0.4
VMP1-217ENST00000593168 NLRP2Q9NX02 1062 aa17.55■□□□□ 0.4
VMP1-217ENST00000593168 TUBGCP6Q96RT7 1819 aa17.54■□□□□ 0.4
VMP1-217ENST00000593168 RGPD2P0DJD1 1756 aa17.54■□□□□ 0.4
VMP1-217ENST00000593168 USHBP1Q8N6Y0 703 aa17.54■□□□□ 0.4
VMP1-217ENST00000593168 LRRC4BQ9NT99 713 aa17.54■□□□□ 0.4
VMP1-217ENST00000593168 COL24A1Q17RW2 1714 aa17.54■□□□□ 0.4
VMP1-217ENST00000593168 FAM208AQ9UK61 1670 aaKnown RBP17.54■□□□□ 0.4
VMP1-217ENST00000593168 MAP3K5Q99683 1374 aa17.53■□□□□ 0.4
VMP1-217ENST00000593168 HTATSF1O43719 755 aaKnown RBP17.53■□□□□ 0.4
VMP1-217ENST00000593168 IL2RBP14784 551 aa17.53■□□□□ 0.4
VMP1-217ENST00000593168 MYH16Q9H6N6 1097 aa17.53■□□□□ 0.4
VMP1-217ENST00000593168 DLG5Q8TDM6 1919 aa17.53■□□□□ 0.4
VMP1-217ENST00000593168 AMOTQ4VCS5 1084 aa17.52■□□□□ 0.4
VMP1-217ENST00000593168 SUPT16HQ9Y5B9 1047 aaKnown RBP17.52■□□□□ 0.4
VMP1-217ENST00000593168 PLEKHG2Q9H7P9 1386 aa17.52■□□□□ 0.39
VMP1-217ENST00000593168 PLEKHO1Q53GL0 409 aaPredicted RBP17.51■□□□□ 0.39
VMP1-217ENST00000593168 C1QTNF8P60827 252 aa17.5■□□□□ 0.39
VMP1-217ENST00000593168 AKT1S1Q96B36 256 aa17.49■□□□□ 0.39
VMP1-217ENST00000593168 RCAN3Q9UKA8 241 aa17.49■□□□□ 0.39
VMP1-217ENST00000593168 RTF1Q92541 710 aaKnown RBP17.48■□□□□ 0.39
VMP1-217ENST00000593168 GTF3C3Q9Y5Q9 886 aa17.48■□□□□ 0.39
VMP1-217ENST00000593168 RNF123Q5XPI4 1314 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 LY75O60449 1722 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 DOT1LQ8TEK3 1739 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 GNAT3A8MTJ3 354 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 ZNF853P0CG23 659 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 GNAI1P63096 354 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 GPR162Q16538 588 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 RAPGEF4Q8WZA2 1011 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 IFT57Q9NWB7 429 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.47■□□□□ 0.396e-10■■□□□ 11.8
VMP1-217ENST00000593168 SHANK3Q9BYB0 1731 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 PNPLA7Q6ZV29 1317 aa17.47■□□□□ 0.39
VMP1-217ENST00000593168 TATP17735 454 aaPredicted RBP17.46■□□□□ 0.39
VMP1-217ENST00000593168 CFAP44Q96MT7 982 aa17.46■□□□□ 0.39
VMP1-217ENST00000593168 THUMPD2Q9BTF0 503 aaKnown RBP17.46■□□□□ 0.39
VMP1-217ENST00000593168 FANCIQ9NVI1 1328 aa17.46■□□□□ 0.38
VMP1-217ENST00000593168 CT47B1P0C2W7 299 aaPredicted RBP17.45■□□□□ 0.38
VMP1-217ENST00000593168 DCTN1Q14203 1278 aa17.45■□□□□ 0.38
VMP1-217ENST00000593168 KLHL34Q8N239 644 aa17.45■□□□□ 0.38
VMP1-217ENST00000593168 DDX54Q8TDD1 881 aaKnown RBP17.45■□□□□ 0.38
VMP1-217ENST00000593168 SLC16A10Q8TF71 515 aa17.45■□□□□ 0.38
VMP1-217ENST00000593168 NEFLP07196 543 aa17.44■□□□□ 0.38
VMP1-217ENST00000593168 KCNQ4P56696 695 aa17.44■□□□□ 0.38
VMP1-217ENST00000593168 AKAP4Q5JQC9 854 aa17.44■□□□□ 0.38
VMP1-217ENST00000593168 SLC27A3Q5K4L6 730 aa17.44■□□□□ 0.38
VMP1-217ENST00000593168 MCM10Q7L590 875 aa17.44■□□□□ 0.38
VMP1-217ENST00000593168 GOLGB1Q14789 3259 aaKnown RBP17.43■□□□□ 0.38
VMP1-217ENST00000593168 ZNF530Q6P9A1 599 aaPredicted RBP17.43■□□□□ 0.38
VMP1-217ENST00000593168 SPG7Q9UQ90 795 aa17.43■□□□□ 0.38
VMP1-217ENST00000593168 CHL1O00533 1208 aa17.42■□□□□ 0.38
VMP1-217ENST00000593168 POLD1P28340 1107 aa17.42■□□□□ 0.38
VMP1-217ENST00000593168 PELP1Q8IZL8 1130 aaKnown RBP17.42■□□□□ 0.38
VMP1-217ENST00000593168 IL17REQ8NFR9 667 aa17.42■□□□□ 0.38
VMP1-217ENST00000593168 NLGN2Q8NFZ4 835 aa17.42■□□□□ 0.38
VMP1-217ENST00000593168 TSR2Q969E8 191 aaKnown RBP17.42■□□□□ 0.38
VMP1-217ENST00000593168 C1orf141Q5JVX7 400 aa17.41■□□□□ 0.38
VMP1-217ENST00000593168 TFCP2L1Q9NZI6 479 aa17.41■□□□□ 0.38
VMP1-217ENST00000593168 LAS1LQ9Y4W2 734 aaKnown RBP17.41■□□□□ 0.38
VMP1-217ENST00000593168 MEGF6O75095 1541 aa17.41■□□□□ 0.38
VMP1-217ENST00000593168 PRIM1P49642 420 aaKnown RBP17.4■□□□□ 0.38
VMP1-217ENST00000593168 EXOSC9Q06265 439 aaKnown RBP17.4■□□□□ 0.38
VMP1-217ENST00000593168 MBIPQ9NS73 344 aa17.4■□□□□ 0.38
VMP1-217ENST00000593168 BABAM1Q9NWV8 329 aa17.4■□□□□ 0.38
VMP1-217ENST00000593168 CEMIPQ8WUJ3 1361 aa17.4■□□□□ 0.38
VMP1-217ENST00000593168 SYTL4Q96C24 671 aaPredicted RBP17.39■□□□□ 0.37
VMP1-217ENST00000593168 GIGYF1O75420 1035 aaPredicted RBP17.38■□□□□ 0.37
VMP1-217ENST00000593168 RRP1P56182 461 aaKnown RBP17.38■□□□□ 0.37
VMP1-217ENST00000593168 TAF7Q15545 349 aaPredicted RBP17.37■□□□□ 0.37
VMP1-217ENST00000593168 IFNL2Q8IZJ0 200 aa17.37■□□□□ 0.37
VMP1-217ENST00000593168 ZNF428Q96B54 188 aa17.37■□□□□ 0.37
VMP1-217ENST00000593168 PKD1L3Q7Z443 1732 aa17.36■□□□□ 0.37
VMP1-217ENST00000593168 RNMTO43148 476 aaKnown RBP17.36■□□□□ 0.37
VMP1-217ENST00000593168 PHKG2P15735 406 aa17.36■□□□□ 0.37
VMP1-217ENST00000593168 YBX3P16989 372 aaKnown RBP eCLIP17.36■□□□□ 0.37
VMP1-217ENST00000593168 RARSP54136 660 aaKnown RBP17.36■□□□□ 0.37
VMP1-217ENST00000593168 FKBP8Q14318 412 aa17.36■□□□□ 0.37
VMP1-217ENST00000593168 ERICH6BQ5W0A0 696 aa17.36■□□□□ 0.37
VMP1-217ENST00000593168 HSP90AB1P08238 724 aaKnown RBP17.35■□□□□ 0.37
VMP1-217ENST00000593168 MPRIPQ6WCQ1 1025 aa17.35■□□□□ 0.37
VMP1-217ENST00000593168 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.35■□□□□ 0.37
VMP1-217ENST00000593168 ZCRB1Q8TBF4 217 aaKnown RBP17.35■□□□□ 0.37
VMP1-217ENST00000593168 LGR6Q9HBX8 967 aa17.35■□□□□ 0.37
VMP1-217ENST00000593168 C5P01031 1676 aa17.35■□□□□ 0.37
VMP1-217ENST00000593168 COL23A1Q86Y22 540 aaPredicted RBP17.34■□□□□ 0.37
VMP1-217ENST00000593168 TSPYL4Q9UJ04 414 aa17.34■□□□□ 0.37
VMP1-217ENST00000593168 CCNL1Q9UK58 526 aaPredicted RBP17.34■□□□□ 0.37
VMP1-217ENST00000593168 TAF1LQ8IZX4 1826 aa17.33■□□□□ 0.37
VMP1-217ENST00000593168 ADAMTS7Q9UKP4 1686 aa17.33■□□□□ 0.37
VMP1-217ENST00000593168 CYP27B1O15528 508 aa17.33■□□□□ 0.36
VMP1-217ENST00000593168 VAMP4O75379 141 aa17.33■□□□□ 0.36
VMP1-217ENST00000593168 PCDH11XQ9BZA7 1347 aa17.32■□□□□ 0.36
VMP1-217ENST00000593168 PCDH11YQ9BZA8 1340 aa17.32■□□□□ 0.36
VMP1-217ENST00000593168 MSH5O43196 834 aa17.32■□□□□ 0.36
VMP1-217ENST00000593168 TEFQ10587 303 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms