RNA–Protein interactions for RNA: ENST00000590260.5

DDX39A-212, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 988 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-212ENST00000590260 NFATC2IPQ8NCF5 419 aa24.47■■□□□ 1.51
DDX39A-212ENST00000590260 COL24A1Q17RW2 1714 aa24.47■■□□□ 1.51
DDX39A-212ENST00000590260 LOC102724428A0A0B4J2F2 783 aa24.46■■□□□ 1.51
DDX39A-212ENST00000590260 PTGER2P43116 358 aa24.46■■□□□ 1.51
DDX39A-212ENST00000590260 SIK1P57059 783 aa24.46■■□□□ 1.51
DDX39A-212ENST00000590260 CABP4P57796 275 aa24.46■■□□□ 1.51
DDX39A-212ENST00000590260 COL5A3P25940 1745 aaPredicted RBP24.45■■□□□ 1.5
DDX39A-212ENST00000590260 RALBP1Q15311 655 aa24.45■■□□□ 1.5
DDX39A-212ENST00000590260 LINC00116Q8NCU8 138 aa24.45■■□□□ 1.5
DDX39A-212ENST00000590260 UBR3Q6ZT12 1888 aa24.45■■□□□ 1.5
DDX39A-212ENST00000590260 U2AF1L5P0DN76 240 aaPredicted RBP24.44■■□□□ 1.5
DDX39A-212ENST00000590260 U2AF1Q01081 240 aaKnown RBP eCLIP24.44■■□□□ 1.52e-6■■□□□ 11.6
DDX39A-212ENST00000590260 SGIP1Q9BQI5 828 aa24.44■■□□□ 1.5
DDX39A-212ENST00000590260 SPON1Q9HCB6 807 aa24.44■■□□□ 1.5
DDX39A-212ENST00000590260 SIPA1L3O60292 1781 aaPredicted RBP24.44■■□□□ 1.5
DDX39A-212ENST00000590260 SMIM5Q71RC9 77 aa24.43■■□□□ 1.5
DDX39A-212ENST00000590260 NUDCQ9Y266 331 aa24.43■■□□□ 1.5
DDX39A-212ENST00000590260 ATF5Q9Y2D1 282 aaPredicted RBP24.43■■□□□ 1.5
DDX39A-212ENST00000590260 TJP1Q07157 1748 aa24.43■■□□□ 1.5
DDX39A-212ENST00000590260 CICQ96RK0 1608 aaPredicted RBP24.43■■□□□ 1.5
DDX39A-212ENST00000590260 SLC52A2Q9HAB3 445 aa24.42■■□□□ 1.5
DDX39A-212ENST00000590260 TFCP2L1Q9NZI6 479 aa24.42■■□□□ 1.5
DDX39A-212ENST00000590260 MAP3K5Q99683 1374 aa24.42■■□□□ 1.5
DDX39A-212ENST00000590260 IL17REQ8NFR9 667 aa24.41■■□□□ 1.5
DDX39A-212ENST00000590260 FCHSD2O94868 740 aa24.4■■□□□ 1.5
DDX39A-212ENST00000590260 COL23A1Q86Y22 540 aaPredicted RBP24.4■■□□□ 1.5
DDX39A-212ENST00000590260 MTFR1LQ9H019 292 aa24.4■■□□□ 1.5
DDX39A-212ENST00000590260 KCPQ6ZWJ8 1503 aa24.4■■□□□ 1.5
DDX39A-212ENST00000590260 ATP6V1AP38606 617 aa24.39■■□□□ 1.49
DDX39A-212ENST00000590260 GAS2L2Q8NHY3 880 aa24.38■■□□□ 1.49
DDX39A-212ENST00000590260 UBR2Q8IWV8 1755 aa24.38■■□□□ 1.49
DDX39A-212ENST00000590260 MYBBP1AQ9BQG0 1328 aaKnown RBP24.37■■□□□ 1.49
DDX39A-212ENST00000590260 GNAT3A8MTJ3 354 aa24.37■■□□□ 1.49
DDX39A-212ENST00000590260 PLEKHF1Q96S99 279 aa24.37■■□□□ 1.49
DDX39A-212ENST00000590260 RBM42Q9BTD8 480 aaKnown RBP24.37■■□□□ 1.49
DDX39A-212ENST00000590260 PRKRIP1Q9H875 184 aaPredicted RBP24.37■■□□□ 1.49
DDX39A-212ENST00000590260 CEMIPQ8WUJ3 1361 aa24.37■■□□□ 1.49
DDX39A-212ENST00000590260 SLC39A6Q13433 755 aa24.36■■□□□ 1.49
DDX39A-212ENST00000590260 MYH14Q7Z406 1995 aaKnown RBP24.36■■□□□ 1.49
DDX39A-212ENST00000590260 PTCD1O75127 700 aaKnown RBP24.35■■□□□ 1.49
DDX39A-212ENST00000590260 DLG5Q8TDM6 1919 aa24.35■■□□□ 1.49
DDX39A-212ENST00000590260 ZNF316A6NFI3 1004 aaPredicted RBP24.34■■□□□ 1.49
DDX39A-212ENST00000590260 SLC16A10Q8TF71 515 aa24.33■■□□□ 1.49
DDX39A-212ENST00000590260 AK7Q96M32 723 aa24.32■■□□□ 1.48
DDX39A-212ENST00000590260 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.3■■□□□ 1.48
DDX39A-212ENST00000590260 PHF14O94880 888 aa24.29■■□□□ 1.48
DDX39A-212ENST00000590260 DCTN1Q14203 1278 aa24.29■■□□□ 1.48
DDX39A-212ENST00000590260 CNTNAP4Q9C0A0 1308 aa24.29■■□□□ 1.48
DDX39A-212ENST00000590260 GNPATO15228 680 aa24.28■■□□□ 1.48
DDX39A-212ENST00000590260 MCM10Q7L590 875 aa24.28■■□□□ 1.48
DDX39A-212ENST00000590260 C4AP0C0L4 1744 aa24.27■■□□□ 1.48
DDX39A-212ENST00000590260 SSFA2P28290 1259 aa24.27■■□□□ 1.48
DDX39A-212ENST00000590260 RC3H1Q5TC82 1133 aaKnown RBP24.27■■□□□ 1.48
DDX39A-212ENST00000590260 MSL1Q68DK7 614 aa24.27■■□□□ 1.48
DDX39A-212ENST00000590260 DNAJC10Q8IXB1 793 aa24.27■■□□□ 1.48
DDX39A-212ENST00000590260 PPP1R1BQ9UD71 204 aaPredicted RBP24.27■■□□□ 1.48
DDX39A-212ENST00000590260 MSH5O43196 834 aa24.26■■□□□ 1.47
DDX39A-212ENST00000590260 KCNQ3O43525 872 aa24.26■■□□□ 1.47
DDX39A-212ENST00000590260 FLAD1Q8NFF5 587 aa24.26■■□□□ 1.47
DDX39A-212ENST00000590260 TEFQ10587 303 aa24.25■■□□□ 1.47
DDX39A-212ENST00000590260 INTS5Q6P9B9 1019 aaKnown RBP24.25■■□□□ 1.47
DDX39A-212ENST00000590260 HMGB2P26583 209 aaKnown RBP24.24■■□□□ 1.47
DDX39A-212ENST00000590260 CRKLP46109 303 aaKnown RBP24.24■■□□□ 1.47
DDX39A-212ENST00000590260 ARXQ96QS3 562 aa24.24■■□□□ 1.47
DDX39A-212ENST00000590260 FHDC1Q9C0D6 1143 aaPredicted RBP24.24■■□□□ 1.47
DDX39A-212ENST00000590260 ZNF790Q6PG37 636 aa24.23■■□□□ 1.47
DDX39A-212ENST00000590260 ZNF496Q96IT1 587 aaPredicted RBP24.23■■□□□ 1.47
DDX39A-212ENST00000590260 HTATSF1O43719 755 aaKnown RBP24.22■■□□□ 1.47
DDX39A-212ENST00000590260 RPS6KA4O75676 772 aa24.22■■□□□ 1.47
DDX39A-212ENST00000590260 CYP19A1P11511 503 aaPredicted RBP24.22■■□□□ 1.47
DDX39A-212ENST00000590260 NFE2L2Q16236 605 aa24.22■■□□□ 1.47
DDX39A-212ENST00000590260 CCDC184Q52MB2 194 aa24.22■■□□□ 1.47
DDX39A-212ENST00000590260 ARHGEF1Q92888 912 aaKnown RBP24.2■■□□□ 1.46
DDX39A-212ENST00000590260 SYT17Q9BSW7 474 aa24.2■■□□□ 1.46
DDX39A-212ENST00000590260 RTCBQ9Y3I0 505 aaKnown RBP24.2■■□□□ 1.46
DDX39A-212ENST00000590260 HEG1Q9ULI3 1381 aa24.19■■□□□ 1.46
DDX39A-212ENST00000590260 VSIG10Q8N0Z9 540 aa24.19■■□□□ 1.46
DDX39A-212ENST00000590260 THUMPD2Q9BTF0 503 aaKnown RBP24.19■■□□□ 1.46
DDX39A-212ENST00000590260 KDM3BQ7LBC6 1761 aa24.19■■□□□ 1.46
DDX39A-212ENST00000590260 BTBD11A6QL63 1104 aa24.18■■□□□ 1.46
DDX39A-212ENST00000590260 RTF1Q92541 710 aaKnown RBP24.18■■□□□ 1.46
DDX39A-212ENST00000590260 ADAMTS8Q9UP79 889 aa24.18■■□□□ 1.46
DDX39A-212ENST00000590260 CCDC146Q8IYE0 955 aa24.17■■□□□ 1.46
DDX39A-212ENST00000590260 TTC5Q8N0Z6 440 aa24.17■■□□□ 1.46
DDX39A-212ENST00000590260 CCDC87Q9NVE4 849 aa24.17■■□□□ 1.46
DDX39A-212ENST00000590260 POLD1P28340 1107 aa24.16■■□□□ 1.46
DDX39A-212ENST00000590260 TRAPPC3LQ5T215 181 aa24.16■■□□□ 1.46
DDX39A-212ENST00000590260 ZBTB1Q9Y2K1 713 aa24.16■■□□□ 1.46
DDX39A-212ENST00000590260 SOS1Q07889 1333 aaPredicted RBP24.15■■□□□ 1.46
DDX39A-212ENST00000590260 ADRA2BP18089 450 aa24.15■■□□□ 1.46
DDX39A-212ENST00000590260 MIS18AQ9NYP9 233 aa24.15■■□□□ 1.46
DDX39A-212ENST00000590260 MAPK8IP3Q9UPT6 1336 aa24.14■■□□□ 1.46
DDX39A-212ENST00000590260 PRAMEF22A3QJZ6 481 aa24.14■■□□□ 1.45
DDX39A-212ENST00000590260 GYS1P13807 737 aa24.14■■□□□ 1.45
DDX39A-212ENST00000590260 TMPOP42166 694 aaKnown RBP24.14■■□□□ 1.45
DDX39A-212ENST00000590260 SRP68Q9UHB9 627 aaKnown RBP24.14■■□□□ 1.45
DDX39A-212ENST00000590260 PNNQ9H307 717 aaKnown RBP24.13■■□□□ 1.45
DDX39A-212ENST00000590260 NEFMP07197 916 aa24.12■■□□□ 1.45
DDX39A-212ENST00000590260 TAF7Q15545 349 aaPredicted RBP24.12■■□□□ 1.45
DDX39A-212ENST00000590260 NLGN2Q8NFZ4 835 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms