RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 PLCG2P16885 1265 aa13.04□□□□□ -0.32
SMCHD1-212ENST00000585229 PAXIP1Q6ZW49 1069 aaPredicted RBP13.04□□□□□ -0.32
SMCHD1-212ENST00000585229 LTV1Q96GA3 475 aaPredicted RBP13.04□□□□□ -0.32
SMCHD1-212ENST00000585229 ZNF521Q96K83 1311 aa13.04□□□□□ -0.32
SMCHD1-212ENST00000585229 APAF1O14727 1248 aa13.03□□□□□ -0.32
SMCHD1-212ENST00000585229 CCDC27Q2M243 656 aa13.03□□□□□ -0.32
SMCHD1-212ENST00000585229 TCP11L2Q8N4U5 519 aa13.03□□□□□ -0.32
SMCHD1-212ENST00000585229 MAPK8IP3Q9UPT6 1336 aa13.03□□□□□ -0.32
SMCHD1-212ENST00000585229 CRB1P82279 1406 aa13.02□□□□□ -0.33
SMCHD1-212ENST00000585229 PPP1R37O75864 691 aa13.01□□□□□ -0.33
SMCHD1-212ENST00000585229 TMPOP42166 694 aaKnown RBP13.01□□□□□ -0.33
SMCHD1-212ENST00000585229 FBXO41Q8TF61 875 aa13.01□□□□□ -0.33
SMCHD1-212ENST00000585229 PHACTR3Q96KR7 559 aa13.01□□□□□ -0.33
SMCHD1-212ENST00000585229 CFAP44Q96MT7 982 aa13.01□□□□□ -0.33
SMCHD1-212ENST00000585229 CARD10Q9BWT7 1032 aa13.01□□□□□ -0.33
SMCHD1-212ENST00000585229 LRRC37A3O60309 1634 aa13.01□□□□□ -0.33
SMCHD1-212ENST00000585229 VIRMAQ69YN4 1812 aaKnown RBP13□□□□□ -0.33
SMCHD1-212ENST00000585229 SHANK3Q9BYB0 1731 aa13□□□□□ -0.33
SMCHD1-212ENST00000585229 ADAMTS7Q9UKP4 1686 aa13□□□□□ -0.33
SMCHD1-212ENST00000585229 MEGF6O75095 1541 aa13□□□□□ -0.33
SMCHD1-212ENST00000585229 POTEJP0CG39 1038 aa13□□□□□ -0.33
SMCHD1-212ENST00000585229 NFE2L2Q16236 605 aa13□□□□□ -0.33
SMCHD1-212ENST00000585229 USHBP1Q8N6Y0 703 aa13□□□□□ -0.33
SMCHD1-212ENST00000585229 BTG4Q9NY30 223 aa13□□□□□ -0.33
SMCHD1-212ENST00000585229 OVOS2A0A0G2JMS6 1433 aa12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 DISP2A7MBM2 1401 aa12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 NUTM2BA6NNL0 878 aaPredicted RBP12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 NUTM2EB1AL46 878 aaPredicted RBP12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 ADAMTS2O95450 1211 aa12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 NEFMP07197 916 aa12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 CSB-PGBD3P0DP91 1061 aa12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 NUTM2AQ8IVF1 878 aaPredicted RBP12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 FNBP4Q8N3X1 1017 aaPredicted RBP12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 SPRYD3Q8NCJ5 442 aa12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 NLRP2Q9NX02 1062 aa12.99□□□□□ -0.33
SMCHD1-212ENST00000585229 BCL9LQ86UU0 1499 aa12.98□□□□□ -0.33
SMCHD1-212ENST00000585229 PDE3BQ13370 1112 aa12.98□□□□□ -0.33
SMCHD1-212ENST00000585229 LARP1Q6PKG0 1096 aaKnown RBP12.98□□□□□ -0.33
SMCHD1-212ENST00000585229 GAS2L2Q8NHY3 880 aa12.97□□□□□ -0.33
SMCHD1-212ENST00000585229 MTHFSDQ2M296 383 aaKnown RBP12.96□□□□□ -0.33
SMCHD1-212ENST00000585229 AMOTQ4VCS5 1084 aa12.96□□□□□ -0.33
SMCHD1-212ENST00000585229 TOM1L2Q6ZVM7 507 aa12.96□□□□□ -0.33
SMCHD1-212ENST00000585229 WDR63Q8IWG1 891 aa12.96□□□□□ -0.33
SMCHD1-212ENST00000585229 WWC1Q8IX03 1113 aa12.96□□□□□ -0.33
SMCHD1-212ENST00000585229 SCN11AQ9UI33 1791 aa12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 HTATSF1O43719 755 aaKnown RBP12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 RIPK4P57078 832 aa12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 EVA1CP58658 441 aa12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 LMOD3Q0VAK6 560 aa12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 UNC5CLQ8IV45 518 aa12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 STRN4Q9NRL3 753 aa12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 RRP7AQ9Y3A4 280 aaKnown RBP12.95□□□□□ -0.34
SMCHD1-212ENST00000585229 SPATA31A1Q5TZJ5 1347 aa12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 SPATA31A5Q5VU36 1347 aa12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 SPATA31A7Q8IWB4 1347 aa12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 CENPBP07199 599 aaPredicted RBP12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 TATP17735 454 aaPredicted RBP12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 PLEKHO1Q53GL0 409 aaPredicted RBP12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 RAPGEF4Q8WZA2 1011 aa12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 THRAP3Q9Y2W1 955 aaKnown RBP12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 ATRNO75882 1429 aa12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 SIPA1L3O60292 1781 aaPredicted RBP12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 MAP3K5Q99683 1374 aa12.94□□□□□ -0.34
SMCHD1-212ENST00000585229 IL16Q14005 1332 aa12.93□□□□□ -0.34
SMCHD1-212ENST00000585229 THSD7AQ9UPZ6 1657 aa12.93□□□□□ -0.34
SMCHD1-212ENST00000585229 SENP3-EIF4A1A0A087X0R7 540 aa12.93□□□□□ -0.34
SMCHD1-212ENST00000585229 VPS72Q15906 364 aa12.93□□□□□ -0.34
SMCHD1-212ENST00000585229 TRMT2AQ8IZ69 625 aaKnown RBP12.93□□□□□ -0.34
SMCHD1-212ENST00000585229 C8orf37Q96NL8 207 aa12.93□□□□□ -0.34
SMCHD1-212ENST00000585229 CEMIPQ8WUJ3 1361 aa12.93□□□□□ -0.34
SMCHD1-212ENST00000585229 GLI3P10071 1580 aa12.92□□□□□ -0.34
SMCHD1-212ENST00000585229 IL2RBP14784 551 aa12.92□□□□□ -0.34
SMCHD1-212ENST00000585229 NEUROD2Q15784 382 aa12.92□□□□□ -0.34
SMCHD1-212ENST00000585229 AKAP4Q5JQC9 854 aa12.92□□□□□ -0.34
SMCHD1-212ENST00000585229 NGLY1Q96IV0 654 aa12.92□□□□□ -0.34
SMCHD1-212ENST00000585229 SALL2Q9Y467 1007 aaPredicted RBP12.92□□□□□ -0.34
SMCHD1-212ENST00000585229 TNS2Q63HR2 1409 aa12.91□□□□□ -0.34
SMCHD1-212ENST00000585229 SLFN5Q08AF3 891 aa12.91□□□□□ -0.34
SMCHD1-212ENST00000585229 BARGINQ6ZT62 677 aa12.91□□□□□ -0.34
SMCHD1-212ENST00000585229 CDCA7Q9BWT1 371 aaPredicted RBP12.91□□□□□ -0.34
SMCHD1-212ENST00000585229 MRC1P22897 1456 aa12.91□□□□□ -0.34
SMCHD1-212ENST00000585229 AFF2P51816 1311 aa12.9□□□□□ -0.34
SMCHD1-212ENST00000585229 GNAT3A8MTJ3 354 aa12.9□□□□□ -0.34
SMCHD1-212ENST00000585229 E9PSI1 815 aa12.9□□□□□ -0.34
SMCHD1-212ENST00000585229 CALD1Q05682 793 aaKnown RBP12.9□□□□□ -0.34
SMCHD1-212ENST00000585229 ZNF530Q6P9A1 599 aaPredicted RBP12.9□□□□□ -0.34
SMCHD1-212ENST00000585229 RYDENQ9NUL5 291 aaKnown RBP12.9□□□□□ -0.34
SMCHD1-212ENST00000585229 SPG7Q9UQ90 795 aa12.9□□□□□ -0.34
SMCHD1-212ENST00000585229 ZNF853P0CG23 659 aa12.89□□□□□ -0.35
SMCHD1-212ENST00000585229 MEX3CQ5U5Q3 659 aaKnown RBP12.89□□□□□ -0.35
SMCHD1-212ENST00000585229 DUSP27Q5VZP5 1158 aa12.89□□□□□ -0.35
SMCHD1-212ENST00000585229 CDCA7LQ96GN5 454 aa12.89□□□□□ -0.35
SMCHD1-212ENST00000585229 TMEM121BQ9BXQ6 578 aaPredicted RBP12.89□□□□□ -0.35
SMCHD1-212ENST00000585229 USP21Q9UK80 565 aa12.89□□□□□ -0.35
SMCHD1-212ENST00000585229 KDM3BQ7LBC6 1761 aa12.89□□□□□ -0.35
SMCHD1-212ENST00000585229 PCDH11XQ9BZA7 1347 aa12.88□□□□□ -0.35
SMCHD1-212ENST00000585229 PCDH11YQ9BZA8 1340 aa12.88□□□□□ -0.35
SMCHD1-212ENST00000585229 KDM6AO15550 1401 aaPredicted RBP12.88□□□□□ -0.35
SMCHD1-212ENST00000585229 TOGARAM1Q9Y4F4 1720 aa12.88□□□□□ -0.35
SMCHD1-212ENST00000585229 PHKG2P15735 406 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms