RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 STK26Q9P289 416 aa14.79□□□□□ -0.04
SS18-221ENST00000582448 CLTCL1P53675 1640 aa14.78□□□□□ -0.04
SS18-221ENST00000582448 RAB3GAP2Q9H2M9 1393 aa14.78□□□□□ -0.04
SS18-221ENST00000582448 ACIN1Q9UKV3 1341 aaKnown RBP14.78□□□□□ -0.04
SS18-221ENST00000582448 CD46P15529 392 aa14.78□□□□□ -0.04
SS18-221ENST00000582448 PTCH1Q13635 1447 aa14.77□□□□□ -0.04
SS18-221ENST00000582448 NPHP3Q7Z494 1330 aa14.77□□□□□ -0.04
SS18-221ENST00000582448 TLL1O43897 1013 aa14.77□□□□□ -0.05
SS18-221ENST00000582448 GJD4Q96KN9 370 aaPredicted RBP14.77□□□□□ -0.05
SS18-221ENST00000582448 ATRNO75882 1429 aa14.76□□□□□ -0.05
SS18-221ENST00000582448 FUT2Q10981 343 aa14.76□□□□□ -0.05
SS18-221ENST00000582448 GPCPD1Q9NPB8 672 aa14.76□□□□□ -0.05
SS18-221ENST00000582448 HFM1A2PYH4 1435 aa14.75□□□□□ -0.05
SS18-221ENST00000582448 WAPLQ7Z5K2 1190 aa14.75□□□□□ -0.05
SS18-221ENST00000582448 CCDC125Q86Z20 511 aa14.75□□□□□ -0.05
SS18-221ENST00000582448 RPGRIP1LQ68CZ1 1315 aa14.74□□□□□ -0.05
SS18-221ENST00000582448 CLCN1P35523 988 aa14.74□□□□□ -0.05
SS18-221ENST00000582448 RGL3Q3MIN7 710 aa14.74□□□□□ -0.05
SS18-221ENST00000582448 PPP1R18Q6NYC8 613 aa14.74□□□□□ -0.05
SS18-221ENST00000582448 FAM217BQ9NTX9 383 aaPredicted RBP14.74□□□□□ -0.05
SS18-221ENST00000582448 DHX57Q6P158 1386 aaKnown RBP14.73□□□□□ -0.05
SS18-221ENST00000582448 KIF1BO60333 1816 aa14.72□□□□□ -0.05
SS18-221ENST00000582448 AMHR2Q16671 573 aa14.72□□□□□ -0.05
SS18-221ENST00000582448 MORN1Q5T089 497 aa14.72□□□□□ -0.05
SS18-221ENST00000582448 SCUBE3Q8IX30 993 aa14.72□□□□□ -0.05
SS18-221ENST00000582448 BCL9LQ86UU0 1499 aa14.71□□□□□ -0.05
SS18-221ENST00000582448 TMEM132EQ6IEE7 984 aa14.71□□□□□ -0.05
SS18-221ENST00000582448 DEFB132Q7Z7B7 95 aa14.71□□□□□ -0.05
SS18-221ENST00000582448 UNC5CLQ8IV45 518 aa14.71□□□□□ -0.05
SS18-221ENST00000582448 CCDC9Q9Y3X0 531 aaKnown RBP14.71□□□□□ -0.05
SS18-221ENST00000582448 SRCAPQ6ZRS2 3230 aa14.71□□□□□ -0.06
SS18-221ENST00000582448 LRPPRCP42704 1394 aaKnown RBP14.71□□□□□ -0.06
SS18-221ENST00000582448 ADGRF5Q8IZF2 1346 aa14.7□□□□□ -0.06
SS18-221ENST00000582448 TRIM66O15016 1216 aa14.7□□□□□ -0.06
SS18-221ENST00000582448 NR1I2O75469 434 aa14.7□□□□□ -0.06
SS18-221ENST00000582448 RGS20O76081 388 aa14.7□□□□□ -0.06
SS18-221ENST00000582448 SF3B2Q13435 895 aaKnown RBP14.7□□□□□ -0.06
SS18-221ENST00000582448 MYOM2P54296 1465 aa14.69□□□□□ -0.06
SS18-221ENST00000582448 NAIPQ13075 1403 aa14.69□□□□□ -0.06
SS18-221ENST00000582448 ATP6V1AP38606 617 aa14.69□□□□□ -0.06
SS18-221ENST00000582448 KRT28Q7Z3Y7 464 aa14.69□□□□□ -0.06
SS18-221ENST00000582448 SLC24A3Q9HC58 644 aa14.69□□□□□ -0.06
SS18-221ENST00000582448 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.69□□□□□ -0.06
SS18-221ENST00000582448 LAMC1P11047 1609 aa14.68□□□□□ -0.06
SS18-221ENST00000582448 AK7Q96M32 723 aa14.68□□□□□ -0.06
SS18-221ENST00000582448 SEPT12Q8IYM1 358 aa14.67□□□□□ -0.06
SS18-221ENST00000582448 CABLES1Q8TDN4 633 aa14.67□□□□□ -0.06
SS18-221ENST00000582448 PXDNQ92626 1479 aa14.67□□□□□ -0.06
SS18-221ENST00000582448 PLEKHH1Q9ULM0 1364 aa14.66□□□□□ -0.06
SS18-221ENST00000582448 MYT1Q01538 1121 aa14.66□□□□□ -0.06
SS18-221ENST00000582448 SLC27A5Q9Y2P5 690 aa14.66□□□□□ -0.06
SS18-221ENST00000582448 COL22A1Q8NFW1 1626 aaPredicted RBP14.66□□□□□ -0.06
SS18-221ENST00000582448 SPATA31A3Q5VYP0 1347 aa14.66□□□□□ -0.06
SS18-221ENST00000582448 SSTR3P32745 418 aaPredicted RBP14.65□□□□□ -0.06
SS18-221ENST00000582448 TTLL12Q14166 644 aaPredicted RBP14.65□□□□□ -0.06
SS18-221ENST00000582448 RALGAPBQ86X10 1494 aa14.64□□□□□ -0.07
SS18-221ENST00000582448 ADH1BP00325 375 aa14.64□□□□□ -0.07
SS18-221ENST00000582448 PSME1Q06323 249 aa14.64□□□□□ -0.07
SS18-221ENST00000582448 BLMP54132 1417 aaPredicted RBP14.64□□□□□ -0.07
SS18-221ENST00000582448 KDM4AO75164 1064 aa14.63□□□□□ -0.07
SS18-221ENST00000582448 SAFB2Q14151 953 aaKnown RBP eCLIP14.63□□□□□ -0.07
SS18-221ENST00000582448 PARP9Q8IXQ6 854 aa14.63□□□□□ -0.07
SS18-221ENST00000582448 THAP11Q96EK4 314 aa14.63□□□□□ -0.07
SS18-221ENST00000582448 S1PR4O95977 384 aa14.62□□□□□ -0.07
SS18-221ENST00000582448 GIGYF2Q6Y7W6 1299 aaKnown RBP14.62□□□□□ -0.07
SS18-221ENST00000582448 KRT27Q7Z3Y8 459 aa14.62□□□□□ -0.07
SS18-221ENST00000582448 PRAG1Q86YV5 1406 aa14.62□□□□□ -0.07
SS18-221ENST00000582448 HLA-CQ95604 372 aa14.62□□□□□ -0.07
SS18-221ENST00000582448 CDC42BPGQ6DT37 1551 aa14.61□□□□□ -0.07
SS18-221ENST00000582448 VPS72Q15906 364 aa14.61□□□□□ -0.07
SS18-221ENST00000582448 ABCC11Q96J66 1382 aa14.6□□□□□ -0.07
SS18-221ENST00000582448 CCDC144AA2RUR9 1427 aa14.6□□□□□ -0.07
SS18-221ENST00000582448 PMFBP1Q8TBY8 1022 aa14.6□□□□□ -0.07
SS18-221ENST00000582448 SPSB2Q99619 263 aa14.6□□□□□ -0.07
SS18-221ENST00000582448 SLIT2O94813 1529 aa14.6□□□□□ -0.07
SS18-221ENST00000582448 PPLO60437 1756 aa14.6□□□□□ -0.07
SS18-221ENST00000582448 EP400Q96L91 3159 aa14.59□□□□□ -0.07
SS18-221ENST00000582448 RNF223E7ERA6 249 aa14.59□□□□□ -0.07
SS18-221ENST00000582448 PPEF1O14829 653 aaPredicted RBP14.59□□□□□ -0.07
SS18-221ENST00000582448 GLI3P10071 1580 aa14.59□□□□□ -0.07
SS18-221ENST00000582448 FAM83GA6ND36 823 aa14.58□□□□□ -0.08
SS18-221ENST00000582448 GGCXP38435 758 aa14.58□□□□□ -0.08
SS18-221ENST00000582448 MPHOSPH9Q99550 1183 aa14.58□□□□□ -0.08
SS18-221ENST00000582448 ANKRD30BQ9BXX2 1392 aa14.58□□□□□ -0.08
SS18-221ENST00000582448 MARF1Q9Y4F3 1742 aaKnown RBP14.58□□□□□ -0.08
SS18-221ENST00000582448 HOXA2O43364 376 aa14.57□□□□□ -0.08
SS18-221ENST00000582448 BAG6P46379 1132 aa14.57□□□□□ -0.08
SS18-221ENST00000582448 GRIPAP1Q4V328 841 aa14.57□□□□□ -0.08
SS18-221ENST00000582448 CFAP70Q5T0N1 1121 aa14.57□□□□□ -0.08
SS18-221ENST00000582448 RNF19BQ6ZMZ0 732 aa14.57□□□□□ -0.08
SS18-221ENST00000582448 YTHDC2Q9H6S0 1430 aaKnown RBP14.57□□□□□ -0.08
SS18-221ENST00000582448 GUCA2AQ02747 115 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 PDE4DQ08499 809 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 FAM182BQ5T319 152 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 BRICD5Q6PL45 260 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 PRAM1Q96QH2 718 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 PRKD2Q9BZL6 878 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 SLC6A16Q9GZN6 736 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 POGKQ9P215 609 aa14.56□□□□□ -0.08
SS18-221ENST00000582448 TECPR2O15040 1411 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms