RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 PRIM1P49642 420 aaKnown RBP12.45□□□□□ -0.42
RFFL-210ENST00000582308 CABP4P57796 275 aa12.45□□□□□ -0.42
RFFL-210ENST00000582308 CALD1Q05682 793 aaKnown RBP12.45□□□□□ -0.42
RFFL-210ENST00000582308 SLFN5Q08AF3 891 aa12.45□□□□□ -0.42
RFFL-210ENST00000582308 TEFQ10587 303 aa12.45□□□□□ -0.42
RFFL-210ENST00000582308 MIS18AQ9NYP9 233 aa12.45□□□□□ -0.42
RFFL-210ENST00000582308 CHL1O00533 1208 aa12.44□□□□□ -0.42
RFFL-210ENST00000582308 TRMT2AQ8IZ69 625 aaKnown RBP12.44□□□□□ -0.42
RFFL-210ENST00000582308 ACSBG1Q96GR2 724 aa12.44□□□□□ -0.42
RFFL-210ENST00000582308 CFAP44Q96MT7 982 aa12.44□□□□□ -0.42
RFFL-210ENST00000582308 IFT57Q9NWB7 429 aa12.44□□□□□ -0.42
RFFL-210ENST00000582308 LAS1LQ9Y4W2 734 aaKnown RBP12.44□□□□□ -0.42
RFFL-210ENST00000582308 NHSQ6T4R5 1651 aa12.44□□□□□ -0.42
RFFL-210ENST00000582308 BTAF1O14981 1849 aa12.44□□□□□ -0.42
RFFL-210ENST00000582308 E9PSI1 815 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 KCNQ2O43526 872 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 GNAI1P63096 354 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 FAM196AQ6ZSG2 479 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 PTF1AQ7RTS3 328 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 PIGBQ92521 554 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 TSR2Q969E8 191 aaKnown RBP12.43□□□□□ -0.42
RFFL-210ENST00000582308 MBIPQ9NS73 344 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 TMOD3Q9NYL9 352 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 PAPPAQ13219 1627 aa12.43□□□□□ -0.42
RFFL-210ENST00000582308 KCNQ3O43525 872 aa12.42□□□□□ -0.42
RFFL-210ENST00000582308 SYTL4Q96C24 671 aaPredicted RBP12.42□□□□□ -0.42
RFFL-210ENST00000582308 BABAM1Q9NWV8 329 aa12.42□□□□□ -0.42
RFFL-210ENST00000582308 UBR2Q8IWV8 1755 aa12.41□□□□□ -0.42
RFFL-210ENST00000582308 BTBD11A6QL63 1104 aa12.41□□□□□ -0.42
RFFL-210ENST00000582308 SLC39A6Q13433 755 aa12.41□□□□□ -0.42
RFFL-210ENST00000582308 DUSP27Q5VZP5 1158 aa12.41□□□□□ -0.42
RFFL-210ENST00000582308 MYH16Q9H6N6 1097 aa12.41□□□□□ -0.42
RFFL-210ENST00000582308 TSPYL4Q9UJ04 414 aa12.41□□□□□ -0.42
RFFL-210ENST00000582308 FANCIQ9NVI1 1328 aa12.4□□□□□ -0.42
RFFL-210ENST00000582308 ATG3Q9NT62 314 aa12.4□□□□□ -0.42
RFFL-210ENST00000582308 ASAP1Q9ULH1 1129 aa12.4□□□□□ -0.42
RFFL-210ENST00000582308 ZNF790Q6PG37 636 aa12.39□□□□□ -0.43
RFFL-210ENST00000582308 TRIM37O94972 964 aa12.38□□□□□ -0.43
RFFL-210ENST00000582308 EIF4A1P60842 406 aaKnown RBP12.38□□□□□ -0.43
RFFL-210ENST00000582308 KRT24Q2M2I5 525 aa12.38□□□□□ -0.43
RFFL-210ENST00000582308 BCL11BQ9C0K0 894 aaPredicted RBP12.38□□□□□ -0.43
RFFL-210ENST00000582308 KCPQ6ZWJ8 1503 aa12.37□□□□□ -0.43
RFFL-210ENST00000582308 EXOSC9Q06265 439 aaKnown RBP12.37□□□□□ -0.43
RFFL-210ENST00000582308 C8orf58Q8NAV2 365 aa12.37□□□□□ -0.43
RFFL-210ENST00000582308 ZNF496Q96IT1 587 aaPredicted RBP12.37□□□□□ -0.43
RFFL-210ENST00000582308 C5P01031 1676 aa12.37□□□□□ -0.43
RFFL-210ENST00000582308 LY75O60449 1722 aa12.37□□□□□ -0.43
RFFL-210ENST00000582308 TNS1Q9HBL0 1735 aaKnown RBP12.37□□□□□ -0.43
RFFL-210ENST00000582308 HEG1Q9ULI3 1381 aa12.36□□□□□ -0.43
RFFL-210ENST00000582308 TSPYL6Q8N831 410 aa12.36□□□□□ -0.43
RFFL-210ENST00000582308 ELL2O00472 640 aaPredicted RBP12.35□□□□□ -0.43
RFFL-210ENST00000582308 PTCD1O75127 700 aaKnown RBP12.35□□□□□ -0.43
RFFL-210ENST00000582308 TTC5Q8N0Z6 440 aa12.35□□□□□ -0.43
RFFL-210ENST00000582308 CACNA1FO60840 1977 aa12.35□□□□□ -0.43
RFFL-210ENST00000582308 SMARCC1Q92922 1105 aaPredicted RBP12.34□□□□□ -0.43
RFFL-210ENST00000582308 FMNL2Q96PY5 1086 aa12.34□□□□□ -0.43
RFFL-210ENST00000582308 SLC4A9Q96Q91 983 aa12.34□□□□□ -0.43
RFFL-210ENST00000582308 PALLDQ8WX93 1383 aa12.33□□□□□ -0.44
RFFL-210ENST00000582308 ZNF831Q5JPB2 1677 aa12.33□□□□□ -0.44
RFFL-210ENST00000582308 TAF1LQ8IZX4 1826 aa12.33□□□□□ -0.44
RFFL-210ENST00000582308 PRAMEF22A3QJZ6 481 aa12.33□□□□□ -0.44
RFFL-210ENST00000582308 VAMP4O75379 141 aa12.33□□□□□ -0.44
RFFL-210ENST00000582308 GIGYF1O75420 1035 aaPredicted RBP12.33□□□□□ -0.44
RFFL-210ENST00000582308 RBM42Q9BTD8 480 aaKnown RBP12.33□□□□□ -0.44
RFFL-210ENST00000582308 TJP1Q07157 1748 aa12.33□□□□□ -0.44
RFFL-210ENST00000582308 LAMB4A4D0S4 1761 aa12.33□□□□□ -0.44
RFFL-210ENST00000582308 SNRPA1P09661 255 aaKnown RBP12.32□□□□□ -0.44
RFFL-210ENST00000582308 TWISTNBQ3B726 338 aaPredicted RBP12.32□□□□□ -0.44
RFFL-210ENST00000582308 MYH14Q7Z406 1995 aaKnown RBP12.32□□□□□ -0.44
RFFL-210ENST00000582308 CICQ96RK0 1608 aaPredicted RBP12.31□□□□□ -0.44
RFFL-210ENST00000582308 LOC102724428A0A0B4J2F2 783 aa12.31□□□□□ -0.44
RFFL-210ENST00000582308 SIK1P57059 783 aa12.31□□□□□ -0.44
RFFL-210ENST00000582308 VSIG10Q8N0Z9 540 aa12.31□□□□□ -0.44
RFFL-210ENST00000582308 COL5A3P25940 1745 aaPredicted RBP12.31□□□□□ -0.44
RFFL-210ENST00000582308 APBA3O96018 575 aa12.3□□□□□ -0.44
RFFL-210ENST00000582308 HOXB7P09629 217 aa12.3□□□□□ -0.44
RFFL-210ENST00000582308 CT47B1P0C2W7 299 aaPredicted RBP12.3□□□□□ -0.44
RFFL-210ENST00000582308 KCNQ4P56696 695 aa12.3□□□□□ -0.44
RFFL-210ENST00000582308 DNAJC10Q8IXB1 793 aa12.3□□□□□ -0.44
RFFL-210ENST00000582308 USP16Q9Y5T5 823 aa12.3□□□□□ -0.44
RFFL-210ENST00000582308 SOS1Q07889 1333 aaPredicted RBP12.3□□□□□ -0.44
RFFL-210ENST00000582308 RGPD3A6NKT7 1758 aaPredicted RBP12.3□□□□□ -0.44
RFFL-210ENST00000582308 RGPD4Q7Z3J3 1758 aa12.3□□□□□ -0.44
RFFL-210ENST00000582308 PLSCR1O15162 318 aa12.29□□□□□ -0.44
RFFL-210ENST00000582308 ITPK1Q13572 414 aa12.29□□□□□ -0.44
RFFL-210ENST00000582308 ILDR2Q71H61 639 aa12.29□□□□□ -0.44
RFFL-210ENST00000582308 PROM2Q8N271 834 aa12.29□□□□□ -0.44
RFFL-210ENST00000582308 NECTIN2Q92692 538 aa12.29□□□□□ -0.44
RFFL-210ENST00000582308 TCERG1O14776 1098 aaKnown RBP12.28□□□□□ -0.44
RFFL-210ENST00000582308 EIF2S2P20042 333 aaKnown RBP12.28□□□□□ -0.44
RFFL-210ENST00000582308 ATP6V1AP38606 617 aa12.28□□□□□ -0.44
RFFL-210ENST00000582308 RARSP54136 660 aaKnown RBP12.28□□□□□ -0.44
RFFL-210ENST00000582308 TEX13AQ9BXU3 409 aaPredicted RBP12.28□□□□□ -0.44
RFFL-210ENST00000582308 RCAN3Q9UKA8 241 aa12.28□□□□□ -0.44
RFFL-210ENST00000582308 CYP19A1P11511 503 aaPredicted RBP12.27□□□□□ -0.45
RFFL-210ENST00000582308 HDGFL1Q5TGJ6 251 aa12.27□□□□□ -0.45
RFFL-210ENST00000582308 CCDC30Q5VVM6 783 aa12.27□□□□□ -0.45
RFFL-210ENST00000582308 SSH1Q8WYL5 1049 aa12.27□□□□□ -0.45
RFFL-210ENST00000582308 ZNF428Q96B54 188 aa12.27□□□□□ -0.45
RFFL-210ENST00000582308 LRRC4BQ9NT99 713 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms