RNA–Protein interactions for RNA: ENST00000581536.5

TOP3A-211, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-211ENST00000581536 KIF24Q5T7B8 1368 aa13.3□□□□□ -0.28
TOP3A-211ENST00000581536 RGL2O15211 777 aa13.29□□□□□ -0.28
TOP3A-211ENST00000581536 TATP17735 454 aaPredicted RBP13.29□□□□□ -0.28
TOP3A-211ENST00000581536 PRIM1P49642 420 aaKnown RBP13.29□□□□□ -0.28
TOP3A-211ENST00000581536 EIF4A2Q14240 407 aaKnown RBP13.29□□□□□ -0.28
TOP3A-211ENST00000581536 NBPF14Q5TI25 921 aa13.29□□□□□ -0.28
TOP3A-211ENST00000581536 RAPGEF4Q8WZA2 1011 aa13.29□□□□□ -0.28
TOP3A-211ENST00000581536 TAOK2Q9UL54 1235 aa13.29□□□□□ -0.28
TOP3A-211ENST00000581536 PARD3Q8TEW0 1356 aa13.29□□□□□ -0.28
TOP3A-211ENST00000581536 PDGFDQ9GZP0 370 aaPredicted RBP13.28□□□□□ -0.28
TOP3A-211ENST00000581536 SMG6Q86US8 1419 aaKnown RBP13.28□□□□□ -0.28
TOP3A-211ENST00000581536 RGPD3A6NKT7 1758 aaPredicted RBP13.27□□□□□ -0.28
TOP3A-211ENST00000581536 RGPD4Q7Z3J3 1758 aa13.27□□□□□ -0.28
TOP3A-211ENST00000581536 KCNQ4P56696 695 aa13.27□□□□□ -0.29
TOP3A-211ENST00000581536 SYTL4Q96C24 671 aaPredicted RBP13.27□□□□□ -0.29
TOP3A-211ENST00000581536 ANO8Q9HCE9 1232 aaPredicted RBP13.27□□□□□ -0.29
TOP3A-211ENST00000581536 DOT1LQ8TEK3 1739 aa13.27□□□□□ -0.29
TOP3A-211ENST00000581536 CYP27B1O15528 508 aa13.26□□□□□ -0.29
TOP3A-211ENST00000581536 ITGB4P16144 1822 aa13.26□□□□□ -0.29
TOP3A-211ENST00000581536 CC2D1BQ5T0F9 858 aaKnown RBP13.26□□□□□ -0.29
TOP3A-211ENST00000581536 LRRC4BQ9NT99 713 aa13.26□□□□□ -0.29
TOP3A-211ENST00000581536 TIE1P35590 1138 aa13.24□□□□□ -0.29
TOP3A-211ENST00000581536 PDAP1Q13442 181 aaKnown RBP13.24□□□□□ -0.29
TOP3A-211ENST00000581536 DCBLD2Q96PD2 775 aa13.24□□□□□ -0.29
TOP3A-211ENST00000581536 NSD2O96028 1365 aa13.23□□□□□ -0.29
TOP3A-211ENST00000581536 NCAPD2Q15021 1401 aa13.22□□□□□ -0.29
TOP3A-211ENST00000581536 PKD1L3Q7Z443 1732 aa13.22□□□□□ -0.29
TOP3A-211ENST00000581536 MTHFSP49914 203 aa13.22□□□□□ -0.29
TOP3A-211ENST00000581536 SLC15A2Q16348 729 aa13.22□□□□□ -0.29
TOP3A-211ENST00000581536 IL13P35225 146 aa13.21□□□□□ -0.29
TOP3A-211ENST00000581536 PSEN1P49768 467 aa13.21□□□□□ -0.29
TOP3A-211ENST00000581536 MPRIPQ6WCQ1 1025 aa13.21□□□□□ -0.29
TOP3A-211ENST00000581536 AEBP1Q8IUX7 1158 aa13.21□□□□□ -0.29
TOP3A-211ENST00000581536 SPG7Q9UQ90 795 aa13.21□□□□□ -0.29
TOP3A-211ENST00000581536 TRPC6Q9Y210 931 aa13.21□□□□□ -0.29
TOP3A-211ENST00000581536 LY75O60449 1722 aa13.21□□□□□ -0.3
TOP3A-211ENST00000581536 TOGARAM1Q9Y4F4 1720 aa13.21□□□□□ -0.3
TOP3A-211ENST00000581536 LRP5O75197 1615 aa13.21□□□□□ -0.3
TOP3A-211ENST00000581536 IGSF1Q8N6C5 1336 aa13.2□□□□□ -0.3
TOP3A-211ENST00000581536 PCDH11XQ9BZA7 1347 aa13.2□□□□□ -0.3
TOP3A-211ENST00000581536 PCDH11YQ9BZA8 1340 aa13.2□□□□□ -0.3
TOP3A-211ENST00000581536 ZNF827Q17R98 1081 aa13.2□□□□□ -0.3
TOP3A-211ENST00000581536 STK32BQ9NY57 414 aa13.2□□□□□ -0.3
TOP3A-211ENST00000581536 CASZ1Q86V15 1759 aa13.2□□□□□ -0.3
TOP3A-211ENST00000581536 ZBTB7AO95365 584 aa13.19□□□□□ -0.3
TOP3A-211ENST00000581536 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
TOP3A-211ENST00000581536 PHKG2P15735 406 aa13.18□□□□□ -0.3
TOP3A-211ENST00000581536 ASTLQ6HA08 431 aaPredicted RBP13.18□□□□□ -0.3
TOP3A-211ENST00000581536 SULT6B1Q6IMI4 303 aa13.18□□□□□ -0.3
TOP3A-211ENST00000581536 PIGBQ92521 554 aa13.18□□□□□ -0.3
TOP3A-211ENST00000581536 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.18□□□□□ -0.32e-7■■□□□ 13.3
TOP3A-211ENST00000581536 IFNL2Q8IZJ0 200 aa13.17□□□□□ -0.3
TOP3A-211ENST00000581536 TMEM106CQ9BVX2 250 aa13.17□□□□□ -0.3
TOP3A-211ENST00000581536 BMP2KQ9NSY1 1161 aaPredicted RBP13.17□□□□□ -0.3
TOP3A-211ENST00000581536 TUBGCP6Q96RT7 1819 aa13.17□□□□□ -0.3
TOP3A-211ENST00000581536 PAPPAQ13219 1627 aa13.17□□□□□ -0.3
TOP3A-211ENST00000581536 TAF1LQ8IZX4 1826 aa13.16□□□□□ -0.3
TOP3A-211ENST00000581536 TTLL13PA6NNM8 815 aa13.16□□□□□ -0.3
TOP3A-211ENST00000581536 HMOX1P09601 288 aa13.16□□□□□ -0.3
TOP3A-211ENST00000581536 SLC27A3Q5K4L6 730 aa13.16□□□□□ -0.3
TOP3A-211ENST00000581536 SPON1Q9HCB6 807 aa13.16□□□□□ -0.3
TOP3A-211ENST00000581536 CCNL1Q9UK58 526 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-211ENST00000581536 ATMINO43313 823 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-211ENST00000581536 PLEKHO1Q53GL0 409 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-211ENST00000581536 VIRMAQ69YN4 1812 aaKnown RBP13.15□□□□□ -0.3
TOP3A-211ENST00000581536 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.14□□□□□ -0.31
TOP3A-211ENST00000581536 ZFP91Q96JP5 570 aaPredicted RBP13.14□□□□□ -0.31
TOP3A-211ENST00000581536 ASAP1Q9ULH1 1129 aa13.14□□□□□ -0.31
TOP3A-211ENST00000581536 NPC1L1Q9UHC9 1359 aa13.13□□□□□ -0.31
TOP3A-211ENST00000581536 DIAPH1O60610 1272 aaKnown RBP13.13□□□□□ -0.31
TOP3A-211ENST00000581536 PTGER2P43116 358 aa13.13□□□□□ -0.31
TOP3A-211ENST00000581536 ZNF530Q6P9A1 599 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-211ENST00000581536 SMIM5Q71RC9 77 aa13.13□□□□□ -0.31
TOP3A-211ENST00000581536 POTEIP0CG38 1075 aa13.12□□□□□ -0.31
TOP3A-211ENST00000581536 ATG3Q9NT62 314 aa13.12□□□□□ -0.31
TOP3A-211ENST00000581536 TMOD3Q9NYL9 352 aa13.12□□□□□ -0.31
TOP3A-211ENST00000581536 TFCP2L1Q9NZI6 479 aa13.12□□□□□ -0.31
TOP3A-211ENST00000581536 PNPLA7Q6ZV29 1317 aa13.12□□□□□ -0.31
TOP3A-211ENST00000581536 PALLDQ8WX93 1383 aa13.11□□□□□ -0.31
TOP3A-211ENST00000581536 AMOTQ4VCS5 1084 aa13.11□□□□□ -0.31
TOP3A-211ENST00000581536 LGR6Q9HBX8 967 aa13.11□□□□□ -0.31
TOP3A-211ENST00000581536 PPP1R1BQ9UD71 204 aaPredicted RBP13.11□□□□□ -0.31
TOP3A-211ENST00000581536 C5P01031 1676 aa13.11□□□□□ -0.31
TOP3A-211ENST00000581536 QSER1Q2KHR3 1735 aa13.1□□□□□ -0.31
TOP3A-211ENST00000581536 KDRP35968 1356 aa13.1□□□□□ -0.31
TOP3A-211ENST00000581536 PPP2R1AP30153 589 aa13.1□□□□□ -0.31
TOP3A-211ENST00000581536 ATN1P54259 1190 aaPredicted RBP13.1□□□□□ -0.31
TOP3A-211ENST00000581536 AMIGO3Q86WK7 504 aa13.1□□□□□ -0.31
TOP3A-211ENST00000581536 COL23A1Q86Y22 540 aaPredicted RBP13.1□□□□□ -0.31
TOP3A-211ENST00000581536 SCN11AQ9UI33 1791 aa13.09□□□□□ -0.31
TOP3A-211ENST00000581536 ERVV-2B6SEH9 535 aa13.09□□□□□ -0.31
TOP3A-211ENST00000581536 U2SURPO15042 1029 aaKnown RBP13.09□□□□□ -0.31
TOP3A-211ENST00000581536 KDM6AO15550 1401 aaPredicted RBP13.09□□□□□ -0.31
TOP3A-211ENST00000581536 MTHFSDQ2M296 383 aaKnown RBP13.09□□□□□ -0.31
TOP3A-211ENST00000581536 NFATC2IPQ8NCF5 419 aa13.09□□□□□ -0.31
TOP3A-211ENST00000581536 SMARCC1Q92922 1105 aaPredicted RBP13.09□□□□□ -0.31
TOP3A-211ENST00000581536 DCAF5Q96JK2 942 aa13.09□□□□□ -0.31
TOP3A-211ENST00000581536 SLC4A9Q96Q91 983 aa13.09□□□□□ -0.31
TOP3A-211ENST00000581536 MTFR1LQ9H019 292 aa13.09□□□□□ -0.31
TOP3A-211ENST00000581536 LOC102724428A0A0B4J2F2 783 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms