RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 POLKQ9UBT6 870 aa16.75■□□□□ 0.27
ITGB4-207ENST00000580542 TRPM3Q9HCF6 1732 aaPredicted RBP16.75■□□□□ 0.27
ITGB4-207ENST00000580542 NUTM2FA1L443 756 aa16.75■□□□□ 0.27
ITGB4-207ENST00000580542 MCTP1Q6DN14 999 aa16.75■□□□□ 0.27
ITGB4-207ENST00000580542 CERS3Q8IU89 383 aa16.75■□□□□ 0.27
ITGB4-207ENST00000580542 COG3Q96JB2 828 aa16.74■□□□□ 0.27
ITGB4-207ENST00000580542 MST1RQ04912 1400 aa16.74■□□□□ 0.27
ITGB4-207ENST00000580542 ZRANB1Q9UGI0 708 aa16.73■□□□□ 0.27
ITGB4-207ENST00000580542 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.73■□□□□ 0.27
ITGB4-207ENST00000580542 PEAK1Q9H792 1746 aa16.73■□□□□ 0.27
ITGB4-207ENST00000580542 TMEM94Q12767 1356 aa16.73■□□□□ 0.27
ITGB4-207ENST00000580542 PROSER2Q86WR7 435 aaPredicted RBP16.73■□□□□ 0.27
ITGB4-207ENST00000580542 AEBP1Q8IUX7 1158 aa16.73■□□□□ 0.27
ITGB4-207ENST00000580542 C19orf44Q9H6X5 657 aa16.73■□□□□ 0.27
ITGB4-207ENST00000580542 C1orf167Q5SNV9 1468 aa16.73■□□□□ 0.27
ITGB4-207ENST00000580542 CT47B1P0C2W7 299 aaPredicted RBP16.72■□□□□ 0.27
ITGB4-207ENST00000580542 EXOSC9Q06265 439 aaKnown RBP16.72■□□□□ 0.27
ITGB4-207ENST00000580542 PLEKHF1Q96S99 279 aa16.72■□□□□ 0.27
ITGB4-207ENST00000580542 PHF8Q9UPP1 1060 aa16.72■□□□□ 0.27
ITGB4-207ENST00000580542 CCDC66A2RUB6 948 aa16.72■□□□□ 0.27
ITGB4-207ENST00000580542 SMC4Q9NTJ3 1288 aa16.72■□□□□ 0.27
ITGB4-207ENST00000580542 TRIM27P14373 513 aa16.71■□□□□ 0.27
ITGB4-207ENST00000580542 NGDNQ8NEJ9 315 aaKnown RBP16.71■□□□□ 0.27
ITGB4-207ENST00000580542 TRIM35Q9UPQ4 493 aa16.71■□□□□ 0.27
ITGB4-207ENST00000580542 RGS22Q8NE09 1264 aa16.71■□□□□ 0.26
ITGB4-207ENST00000580542 RBM33Q96EV2 1170 aaKnown RBP16.71■□□□□ 0.26
ITGB4-207ENST00000580542 RGPD1P0DJD0 1748 aa16.7■□□□□ 0.26
ITGB4-207ENST00000580542 TMPOP42166 694 aaKnown RBP16.7■□□□□ 0.26
ITGB4-207ENST00000580542 SLC20A2Q08357 652 aa16.7■□□□□ 0.26
ITGB4-207ENST00000580542 PHRF1Q9P1Y6 1649 aaKnown RBP16.7■□□□□ 0.26
ITGB4-207ENST00000580542 RNF214Q8ND24 703 aa16.7■□□□□ 0.26
ITGB4-207ENST00000580542 SSH1Q8WYL5 1049 aa16.7■□□□□ 0.26
ITGB4-207ENST00000580542 TIGD1Q96MW7 591 aa16.7■□□□□ 0.26
ITGB4-207ENST00000580542 HDAC1Q13547 482 aaPredicted RBP16.69■□□□□ 0.26
ITGB4-207ENST00000580542 NOLC1Q14978 699 aaKnown RBP eCLIP16.69■□□□□ 0.26
ITGB4-207ENST00000580542 U2SURPO15042 1029 aaKnown RBP16.69■□□□□ 0.26
ITGB4-207ENST00000580542 MPNDQ8N594 471 aa16.69■□□□□ 0.26
ITGB4-207ENST00000580542 FEZ1Q99689 392 aa16.69■□□□□ 0.26
ITGB4-207ENST00000580542 RBM27Q9P2N5 1060 aaKnown RBP16.69■□□□□ 0.26
ITGB4-207ENST00000580542 K7ELQ4 463 aaPredicted RBP16.68■□□□□ 0.26
ITGB4-207ENST00000580542 CHRM1P11229 460 aaPredicted RBP16.68■□□□□ 0.26
ITGB4-207ENST00000580542 OGFRQ9NZT2 677 aa16.68■□□□□ 0.26
ITGB4-207ENST00000580542 ALS2Q96Q42 1657 aa16.68■□□□□ 0.26
ITGB4-207ENST00000580542 GABPB1Q06547 395 aaPredicted RBP16.67■□□□□ 0.26
ITGB4-207ENST00000580542 CLEC17AQ6ZS10 378 aa16.67■□□□□ 0.26
ITGB4-207ENST00000580542 ATF7IPQ6VMQ6 1270 aa16.67■□□□□ 0.26
ITGB4-207ENST00000580542 ITPRIPQ8IWB1 547 aa16.67■□□□□ 0.26
ITGB4-207ENST00000580542 PIBF1Q8WXW3 757 aa16.67■□□□□ 0.26
ITGB4-207ENST00000580542 DDX19BQ9UMR2 479 aa16.67■□□□□ 0.26
ITGB4-207ENST00000580542 KIF24Q5T7B8 1368 aa16.67■□□□□ 0.26
ITGB4-207ENST00000580542 NFAT5O94916 1531 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 SYCE3A1L190 88 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 DIAPH1O60610 1272 aaKnown RBP16.66■□□□□ 0.26
ITGB4-207ENST00000580542 BRD2P25440 801 aaKnown RBP16.66■□□□□ 0.26
ITGB4-207ENST00000580542 LRSAM1Q6UWE0 723 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 EMILIN1Q9Y6C2 1016 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 SLIT3O75094 1523 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 TRIM6-TRIM34B2RNG4 842 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 CD2BP2O95400 341 aaKnown RBP16.66■□□□□ 0.26
ITGB4-207ENST00000580542 TRIM34Q9BYJ4 488 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 LMBRD1Q9NUN5 540 aa16.66■□□□□ 0.26
ITGB4-207ENST00000580542 NOB1Q9ULX3 412 aaKnown RBP16.66■□□□□ 0.26
ITGB4-207ENST00000580542 FBLN1P23142 703 aa16.65■□□□□ 0.26
ITGB4-207ENST00000580542 IL13P35225 146 aa16.65■□□□□ 0.26
ITGB4-207ENST00000580542 GAS2L2Q8NHY3 880 aa16.65■□□□□ 0.26
ITGB4-207ENST00000580542 IL16Q14005 1332 aa16.65■□□□□ 0.26
ITGB4-207ENST00000580542 C17orf53Q8N3J3 647 aaPredicted RBP16.65■□□□□ 0.26
ITGB4-207ENST00000580542 TMEM57Q8N5G2 664 aa16.65■□□□□ 0.26
ITGB4-207ENST00000580542 CHAF1AQ13111 956 aaPredicted RBP16.64■□□□□ 0.25
ITGB4-207ENST00000580542 PRPF40AO75400 957 aaKnown RBP16.64■□□□□ 0.25
ITGB4-207ENST00000580542 ESCO1Q5FWF5 840 aa16.64■□□□□ 0.25
ITGB4-207ENST00000580542 C14orf37Q86TY3 774 aa16.63■□□□□ 0.25
ITGB4-207ENST00000580542 ORAI2Q96SN7 254 aa16.63■□□□□ 0.25
ITGB4-207ENST00000580542 ZBTB40Q9NUA8 1239 aa16.63■□□□□ 0.25
ITGB4-207ENST00000580542 LTN1O94822 1766 aa16.62■□□□□ 0.25
ITGB4-207ENST00000580542 SLFN14P0C7P3 912 aa16.62■□□□□ 0.25
ITGB4-207ENST00000580542 ANKRD7Q92527 254 aa16.62■□□□□ 0.25
ITGB4-207ENST00000580542 SBNO1A3KN83 1393 aa16.62■□□□□ 0.25
ITGB4-207ENST00000580542 MSH6P52701 1360 aa16.62■□□□□ 0.25
ITGB4-207ENST00000580542 DHX37Q8IY37 1157 aaKnown RBP16.62■□□□□ 0.25
ITGB4-207ENST00000580542 DIAPH3Q9NSV4 1193 aa16.62■□□□□ 0.25
ITGB4-207ENST00000580542 RRS1Q15050 365 aaKnown RBP16.61■□□□□ 0.25
ITGB4-207ENST00000580542 CADPS2Q86UW7 1296 aa16.61■□□□□ 0.25
ITGB4-207ENST00000580542 FCHSD2O94868 740 aa16.61■□□□□ 0.25
ITGB4-207ENST00000580542 ZNF335Q9H4Z2 1342 aaPredicted RBP16.6■□□□□ 0.25
ITGB4-207ENST00000580542 RIOK3O14730 519 aaKnown RBP16.6■□□□□ 0.25
ITGB4-207ENST00000580542 FKBP5Q13451 457 aaPredicted RBP16.6■□□□□ 0.25
ITGB4-207ENST00000580542 GPT2Q8TD30 523 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 ZBTB9Q96C00 473 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 CRYBG1Q9Y4K1 1723 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 RTL1A6NKG5 1358 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 FLT4P35916 1363 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 ERICH4A6NGS2 130 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 CAPN2P17655 700 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 ATF3P18847 181 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 NUCB2P80303 420 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 RBM42Q9BTD8 480 aaKnown RBP16.6■□□□□ 0.25
ITGB4-207ENST00000580542 TTC12Q9H892 705 aaPredicted RBP16.6■□□□□ 0.25
ITGB4-207ENST00000580542 CALCOCO1Q9P1Z2 691 aa16.6■□□□□ 0.25
ITGB4-207ENST00000580542 KIF16BQ96L93 1317 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms