RNA–Protein interactions for RNA: ENST00000580541.1

SKA2-205, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-205ENST00000580541 FAM182BQ5T319 152 aa18.59■□□□□ 0.57
SKA2-205ENST00000580541 ACSBG1Q96GR2 724 aa18.59■□□□□ 0.57
SKA2-205ENST00000580541 YTHDC1Q96MU7 727 aaKnown RBP18.59■□□□□ 0.57
SKA2-205ENST00000580541 BCL11BQ9C0K0 894 aaPredicted RBP18.59■□□□□ 0.57
SKA2-205ENST00000580541 MYH16Q9H6N6 1097 aa18.59■□□□□ 0.57
SKA2-205ENST00000580541 LAS1LQ9Y4W2 734 aaKnown RBP18.59■□□□□ 0.57
SKA2-205ENST00000580541 E9PSI1 815 aa18.58■□□□□ 0.56
SKA2-205ENST00000580541 SMARCC1Q92922 1105 aaPredicted RBP18.58■□□□□ 0.56
SKA2-205ENST00000580541 THUMPD2Q9BTF0 503 aaKnown RBP18.58■□□□□ 0.56
SKA2-205ENST00000580541 ZNF521Q96K83 1311 aa18.57■□□□□ 0.56
SKA2-205ENST00000580541 TTC5Q8N0Z6 440 aa18.57■□□□□ 0.56
SKA2-205ENST00000580541 TSPYL4Q9UJ04 414 aa18.57■□□□□ 0.56
SKA2-205ENST00000580541 VIRMAQ69YN4 1812 aaKnown RBP18.56■□□□□ 0.56
SKA2-205ENST00000580541 CHL1O00533 1208 aa18.56■□□□□ 0.56
SKA2-205ENST00000580541 PIGBQ92521 554 aa18.56■□□□□ 0.56
SKA2-205ENST00000580541 ADAMTS7Q9UKP4 1686 aa18.56■□□□□ 0.56
SKA2-205ENST00000580541 SF3B2Q13435 895 aaKnown RBP18.55■□□□□ 0.56
SKA2-205ENST00000580541 CCDC125Q86Z20 511 aa18.55■□□□□ 0.56
SKA2-205ENST00000580541 CHMP4AQ9BY43 222 aa18.55■□□□□ 0.56
SKA2-205ENST00000580541 TRIM37O94972 964 aa18.54■□□□□ 0.56
SKA2-205ENST00000580541 KCNQ2O43526 872 aa18.53■□□□□ 0.56
SKA2-205ENST00000580541 ZNF853P0CG23 659 aa18.53■□□□□ 0.56
SKA2-205ENST00000580541 ZNF790Q6PG37 636 aa18.53■□□□□ 0.56
SKA2-205ENST00000580541 MRC1P22897 1456 aa18.52■□□□□ 0.56
SKA2-205ENST00000580541 ITGB4P16144 1822 aa18.52■□□□□ 0.56
SKA2-205ENST00000580541 SLFN5Q08AF3 891 aa18.52■□□□□ 0.56
SKA2-205ENST00000580541 FMNL2Q96PY5 1086 aa18.51■□□□□ 0.55
SKA2-205ENST00000580541 MIS18AQ9NYP9 233 aa18.51■□□□□ 0.55
SKA2-205ENST00000580541 DOT1LQ8TEK3 1739 aa18.51■□□□□ 0.55
SKA2-205ENST00000580541 SBF2Q86WG5 1849 aa18.51■□□□□ 0.55
SKA2-205ENST00000580541 MBIPQ9NS73 344 aa18.5■□□□□ 0.55
SKA2-205ENST00000580541 ATG3Q9NT62 314 aa18.5■□□□□ 0.55
SKA2-205ENST00000580541 APBA3O96018 575 aa18.49■□□□□ 0.55
SKA2-205ENST00000580541 TEX13AQ9BXU3 409 aaPredicted RBP18.49■□□□□ 0.55
SKA2-205ENST00000580541 ASAP1Q9ULH1 1129 aa18.49■□□□□ 0.55
SKA2-205ENST00000580541 SOS1Q07889 1333 aaPredicted RBP18.49■□□□□ 0.55
SKA2-205ENST00000580541 NHSQ6T4R5 1651 aa18.48■□□□□ 0.55
SKA2-205ENST00000580541 PLSCR1O15162 318 aa18.48■□□□□ 0.55
SKA2-205ENST00000580541 SLC39A6Q13433 755 aa18.48■□□□□ 0.55
SKA2-205ENST00000580541 VSIG10Q8N0Z9 540 aa18.48■□□□□ 0.55
SKA2-205ENST00000580541 TOGARAM1Q9Y4F4 1720 aa18.48■□□□□ 0.55
SKA2-205ENST00000580541 SIPA1L3O60292 1781 aaPredicted RBP18.47■□□□□ 0.55
SKA2-205ENST00000580541 TRMT2AQ8IZ69 625 aaKnown RBP18.47■□□□□ 0.55
SKA2-205ENST00000580541 RBM42Q9BTD8 480 aaKnown RBP18.47■□□□□ 0.55
SKA2-205ENST00000580541 PTCD1O75127 700 aaKnown RBP18.46■□□□□ 0.55
SKA2-205ENST00000580541 SNRPA1P09661 255 aaKnown RBP18.46■□□□□ 0.55
SKA2-205ENST00000580541 EIF4A1P60842 406 aaKnown RBP18.46■□□□□ 0.55
SKA2-205ENST00000580541 CDCA7LQ96GN5 454 aa18.46■□□□□ 0.55
SKA2-205ENST00000580541 FANCIQ9NVI1 1328 aa18.46■□□□□ 0.55
SKA2-205ENST00000580541 PALLDQ8WX93 1383 aa18.45■□□□□ 0.54
SKA2-205ENST00000580541 HOXB7P09629 217 aa18.45■□□□□ 0.54
SKA2-205ENST00000580541 CT47B1P0C2W7 299 aaPredicted RBP18.45■□□□□ 0.54
SKA2-205ENST00000580541 BAG6P46379 1132 aa18.45■□□□□ 0.54
SKA2-205ENST00000580541 TSR2Q969E8 191 aaKnown RBP18.45■□□□□ 0.54
SKA2-205ENST00000580541 LOC102724428A0A0B4J2F2 783 aa18.44■□□□□ 0.54
SKA2-205ENST00000580541 SIK1P57059 783 aa18.44■□□□□ 0.54
SKA2-205ENST00000580541 SLC27A3Q5K4L6 730 aa18.44■□□□□ 0.54
SKA2-205ENST00000580541 ZNF496Q96IT1 587 aaPredicted RBP18.44■□□□□ 0.54
SKA2-205ENST00000580541 SPINK5Q9NQ38 1064 aaPredicted RBP18.44■□□□□ 0.54
SKA2-205ENST00000580541 KCNQ3O43525 872 aa18.43■□□□□ 0.54
SKA2-205ENST00000580541 STARD3NLO95772 234 aa18.43■□□□□ 0.54
SKA2-205ENST00000580541 DUSP27Q5VZP5 1158 aa18.43■□□□□ 0.54
SKA2-205ENST00000580541 BTAF1O14981 1849 aa18.43■□□□□ 0.54
SKA2-205ENST00000580541 HEG1Q9ULI3 1381 aa18.42■□□□□ 0.54
SKA2-205ENST00000580541 GIGYF1O75420 1035 aaPredicted RBP18.42■□□□□ 0.54
SKA2-205ENST00000580541 ATP6V1AP38606 617 aa18.42■□□□□ 0.54
SKA2-205ENST00000580541 PTF1AQ7RTS3 328 aa18.42■□□□□ 0.54
SKA2-205ENST00000580541 ZNF428Q96B54 188 aa18.42■□□□□ 0.54
SKA2-205ENST00000580541 KDM3BQ7LBC6 1761 aa18.41■□□□□ 0.54
SKA2-205ENST00000580541 EXOSC9Q06265 439 aaKnown RBP18.41■□□□□ 0.54
SKA2-205ENST00000580541 TWISTNBQ3B726 338 aaPredicted RBP18.41■□□□□ 0.54
SKA2-205ENST00000580541 CCNL1Q9UK58 526 aaPredicted RBP18.41■□□□□ 0.54
SKA2-205ENST00000580541 C8orf58Q8NAV2 365 aa18.39■□□□□ 0.53
SKA2-205ENST00000580541 ELL2O00472 640 aaPredicted RBP18.38■□□□□ 0.53
SKA2-205ENST00000580541 TXNRD1Q16881 649 aa18.38■□□□□ 0.53
SKA2-205ENST00000580541 CCDC30Q5VVM6 783 aa18.38■□□□□ 0.53
SKA2-205ENST00000580541 PAPPAQ13219 1627 aa18.38■□□□□ 0.53
SKA2-205ENST00000580541 NPM2Q86SE8 214 aaKnown RBP18.37■□□□□ 0.53
SKA2-205ENST00000580541 UPF1Q92900 1129 aaKnown RBP eCLIP18.37■□□□□ 0.53
SKA2-205ENST00000580541 EP400Q96L91 3159 aa18.37■□□□□ 0.53
SKA2-205ENST00000580541 UBR2Q8IWV8 1755 aa18.37■□□□□ 0.53
SKA2-205ENST00000580541 VAMP4O75379 141 aa18.36■□□□□ 0.53
SKA2-205ENST00000580541 EIF2S2P20042 333 aaKnown RBP18.36■□□□□ 0.53
SKA2-205ENST00000580541 HDGFL1Q5TGJ6 251 aa18.36■□□□□ 0.53
SKA2-205ENST00000580541 ILDR2Q71H61 639 aa18.36■□□□□ 0.53
SKA2-205ENST00000580541 STK31Q9BXU1 1019 aa18.36■□□□□ 0.53
SKA2-205ENST00000580541 KCPQ6ZWJ8 1503 aa18.35■□□□□ 0.53
SKA2-205ENST00000580541 ERBB4Q15303 1308 aa18.35■□□□□ 0.53
SKA2-205ENST00000580541 EN1Q05925 392 aaPredicted RBP18.35■□□□□ 0.53
SKA2-205ENST00000580541 DNAJC10Q8IXB1 793 aa18.35■□□□□ 0.53
SKA2-205ENST00000580541 CAMKK2Q96RR4 588 aa18.35■□□□□ 0.53
SKA2-205ENST00000580541 USP16Q9Y5T5 823 aa18.35■□□□□ 0.53
SKA2-205ENST00000580541 ZNF831Q5JPB2 1677 aa18.34■□□□□ 0.53
SKA2-205ENST00000580541 RC3H1Q5TC82 1133 aaKnown RBP18.34■□□□□ 0.53
SKA2-205ENST00000580541 TSPYL6Q8N831 410 aa18.34■□□□□ 0.53
SKA2-205ENST00000580541 DBF4Q9UBU7 674 aaPredicted RBP18.34■□□□□ 0.53
SKA2-205ENST00000580541 LY75O60449 1722 aa18.33■□□□□ 0.52
SKA2-205ENST00000580541 TNS1Q9HBL0 1735 aaKnown RBP18.33■□□□□ 0.52
SKA2-205ENST00000580541 CENPBP07199 599 aaPredicted RBP18.33■□□□□ 0.52
SKA2-205ENST00000580541 CYP19A1P11511 503 aaPredicted RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms