RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 LGR6Q9HBX8 967 aa22.28■■□□□ 1.16
SREBF1-219ENST00000580540 U2AF1L5P0DN76 240 aaPredicted RBP22.27■■□□□ 1.16
SREBF1-219ENST00000580540 U2AF1Q01081 240 aaKnown RBP eCLIP22.27■■□□□ 1.16
SREBF1-219ENST00000580540 ITPK1Q13572 414 aa22.27■■□□□ 1.16
SREBF1-219ENST00000580540 LINC00116Q8NCU8 138 aa22.27■■□□□ 1.16
SREBF1-219ENST00000580540 TUBGCP6Q96RT7 1819 aa22.27■■□□□ 1.15
SREBF1-219ENST00000580540 TAF1LQ8IZX4 1826 aa22.25■■□□□ 1.15
SREBF1-219ENST00000580540 RNMTO43148 476 aaKnown RBP22.25■■□□□ 1.15
SREBF1-219ENST00000580540 PTCD1O75127 700 aaKnown RBP22.25■■□□□ 1.15
SREBF1-219ENST00000580540 PHF14O94880 888 aa22.25■■□□□ 1.15
SREBF1-219ENST00000580540 PRKAR2BP31323 418 aa22.25■■□□□ 1.15
SREBF1-219ENST00000580540 ZEB1P37275 1124 aaPredicted RBP22.25■■□□□ 1.15
SREBF1-219ENST00000580540 SMIM5Q71RC9 77 aa22.25■■□□□ 1.15
SREBF1-219ENST00000580540 QSER1Q2KHR3 1735 aa22.24■■□□□ 1.15
SREBF1-219ENST00000580540 POLD1P28340 1107 aa22.24■■□□□ 1.15
SREBF1-219ENST00000580540 FLAD1Q8NFF5 587 aa22.24■■□□□ 1.15
SREBF1-219ENST00000580540 GAS2L2Q8NHY3 880 aa22.24■■□□□ 1.15
SREBF1-219ENST00000580540 ARXQ96QS3 562 aa22.24■■□□□ 1.15
SREBF1-219ENST00000580540 SGIP1Q9BQI5 828 aa22.24■■□□□ 1.15
SREBF1-219ENST00000580540 C4BP0C0L5 1744 aa22.23■■□□□ 1.15
SREBF1-219ENST00000580540 MSL1Q68DK7 614 aa22.23■■□□□ 1.15
SREBF1-219ENST00000580540 KLHL34Q8N239 644 aa22.23■■□□□ 1.15
SREBF1-219ENST00000580540 SLC52A2Q9HAB3 445 aa22.23■■□□□ 1.15
SREBF1-219ENST00000580540 GNPATO15228 680 aa22.22■■□□□ 1.15
SREBF1-219ENST00000580540 SLC4A9Q96Q91 983 aa22.22■■□□□ 1.15
SREBF1-219ENST00000580540 FHDC1Q9C0D6 1143 aaPredicted RBP22.22■■□□□ 1.15
SREBF1-219ENST00000580540 RSPH6AQ9H0K4 717 aa22.22■■□□□ 1.15
SREBF1-219ENST00000580540 SCN11AQ9UI33 1791 aa22.22■■□□□ 1.15
SREBF1-219ENST00000580540 AMIGO3Q86WK7 504 aa22.21■■□□□ 1.15
SREBF1-219ENST00000580540 PHACTR3Q96KR7 559 aa22.21■■□□□ 1.15
SREBF1-219ENST00000580540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.2■■□□□ 1.14
SREBF1-219ENST00000580540 GNAT3A8MTJ3 354 aa22.2■■□□□ 1.14
SREBF1-219ENST00000580540 DCAF8L1A6NGE4 600 aa22.19■■□□□ 1.14
SREBF1-219ENST00000580540 SLC39A6Q13433 755 aa22.19■■□□□ 1.14
SREBF1-219ENST00000580540 MAP3K5Q99683 1374 aa22.18■■□□□ 1.14
SREBF1-219ENST00000580540 RALBP1Q15311 655 aa22.18■■□□□ 1.14
SREBF1-219ENST00000580540 FCHSD2O94868 740 aa22.17■■□□□ 1.14
SREBF1-219ENST00000580540 SSFA2P28290 1259 aa22.17■■□□□ 1.14
SREBF1-219ENST00000580540 SYT17Q9BSW7 474 aa22.17■■□□□ 1.14
SREBF1-219ENST00000580540 TEFQ10587 303 aa22.16■■□□□ 1.14
SREBF1-219ENST00000580540 IL17REQ8NFR9 667 aa22.16■■□□□ 1.14
SREBF1-219ENST00000580540 RTCBQ9Y3I0 505 aaKnown RBP22.16■■□□□ 1.14
SREBF1-219ENST00000580540 UBR3Q6ZT12 1888 aa22.14■■□□□ 1.13
SREBF1-219ENST00000580540 NEFMP07197 916 aa22.14■■□□□ 1.13
SREBF1-219ENST00000580540 TRAPPC3LQ5T215 181 aa22.14■■□□□ 1.13
SREBF1-219ENST00000580540 VIRMAQ69YN4 1812 aaKnown RBP22.14■■□□□ 1.13
SREBF1-219ENST00000580540 RC3H1Q5TC82 1133 aaKnown RBP22.13■■□□□ 1.13
SREBF1-219ENST00000580540 CNTNAP4Q9C0A0 1308 aa22.12■■□□□ 1.13
SREBF1-219ENST00000580540 MRC1P22897 1456 aa22.12■■□□□ 1.13
SREBF1-219ENST00000580540 DNAJC10Q8IXB1 793 aa22.12■■□□□ 1.13
SREBF1-219ENST00000580540 TTC5Q8N0Z6 440 aa22.12■■□□□ 1.13
SREBF1-219ENST00000580540 RTF1Q92541 710 aaKnown RBP22.12■■□□□ 1.13
SREBF1-219ENST00000580540 CRKLP46109 303 aaKnown RBP22.11■■□□□ 1.13
SREBF1-219ENST00000580540 RPS6KA4O75676 772 aa22.1■■□□□ 1.13
SREBF1-219ENST00000580540 RFC4P35249 363 aa22.09■■□□□ 1.13
SREBF1-219ENST00000580540 ARHGEF1Q92888 912 aaKnown RBP22.09■■□□□ 1.13
SREBF1-219ENST00000580540 ZNF831Q5JPB2 1677 aa22.09■■□□□ 1.13
SREBF1-219ENST00000580540 ADAMTS7Q9UKP4 1686 aa22.09■■□□□ 1.13
SREBF1-219ENST00000580540 MYBBP1AQ9BQG0 1328 aaKnown RBP22.08■■□□□ 1.13
SREBF1-219ENST00000580540 MCM10Q7L590 875 aa22.08■■□□□ 1.13
SREBF1-219ENST00000580540 COL5A3P25940 1745 aaPredicted RBP22.07■■□□□ 1.12
SREBF1-219ENST00000580540 COL24A1Q17RW2 1714 aa22.07■■□□□ 1.12
SREBF1-219ENST00000580540 ADRA2BP18089 450 aa22.07■■□□□ 1.12
SREBF1-219ENST00000580540 DCTN1Q14203 1278 aa22.07■■□□□ 1.12
SREBF1-219ENST00000580540 BTBD11A6QL63 1104 aa22.06■■□□□ 1.12
SREBF1-219ENST00000580540 PNNQ9H307 717 aaKnown RBP22.06■■□□□ 1.12
SREBF1-219ENST00000580540 MYH14Q7Z406 1995 aaKnown RBP22.06■■□□□ 1.12
SREBF1-219ENST00000580540 INTS5Q6P9B9 1019 aaKnown RBP22.05■■□□□ 1.12
SREBF1-219ENST00000580540 ZNF790Q6PG37 636 aa22.05■■□□□ 1.12
SREBF1-219ENST00000580540 PELP1Q8IZL8 1130 aaKnown RBP22.05■■□□□ 1.12
SREBF1-219ENST00000580540 NLGN2Q8NFZ4 835 aa22.05■■□□□ 1.12
SREBF1-219ENST00000580540 CCDC87Q9NVE4 849 aa22.05■■□□□ 1.12
SREBF1-219ENST00000580540 TJP1Q07157 1748 aa22.05■■□□□ 1.12
SREBF1-219ENST00000580540 MAPK8IP3Q9UPT6 1336 aa22.05■■□□□ 1.12
SREBF1-219ENST00000580540 CEMIPQ8WUJ3 1361 aa22.04■■□□□ 1.12
SREBF1-219ENST00000580540 CYP19A1P11511 503 aaPredicted RBP22.04■■□□□ 1.12
SREBF1-219ENST00000580540 ZNF496Q96IT1 587 aaPredicted RBP22.04■■□□□ 1.12
SREBF1-219ENST00000580540 KCPQ6ZWJ8 1503 aa22.04■■□□□ 1.12
SREBF1-219ENST00000580540 KCNQ3O43525 872 aa22.03■■□□□ 1.12
SREBF1-219ENST00000580540 VSIG10Q8N0Z9 540 aa22.03■■□□□ 1.12
SREBF1-219ENST00000580540 PLEKHF1Q96S99 279 aa22.03■■□□□ 1.12
SREBF1-219ENST00000580540 HTATSF1O43719 755 aaKnown RBP22.02■■□□□ 1.12
SREBF1-219ENST00000580540 MMP10P09238 476 aa22.02■■□□□ 1.12
SREBF1-219ENST00000580540 GPR162Q16538 588 aa22.02■■□□□ 1.12
SREBF1-219ENST00000580540 NLGN1Q8N2Q7 840 aa22.02■■□□□ 1.12
SREBF1-219ENST00000580540 SRP68Q9UHB9 627 aaKnown RBP22.02■■□□□ 1.12
SREBF1-219ENST00000580540 STARD3NLO95772 234 aa22.01■■□□□ 1.11
SREBF1-219ENST00000580540 FMNL2Q96PY5 1086 aa22.01■■□□□ 1.11
SREBF1-219ENST00000580540 PRKRIP1Q9H875 184 aaPredicted RBP22.01■■□□□ 1.11
SREBF1-219ENST00000580540 CANXP27824 592 aaKnown RBP22■■□□□ 1.11
SREBF1-219ENST00000580540 NFE2L2Q16236 605 aa22■■□□□ 1.11
SREBF1-219ENST00000580540 ZBTB1Q9Y2K1 713 aa22■■□□□ 1.11
SREBF1-219ENST00000580540 HEG1Q9ULI3 1381 aa21.99■■□□□ 1.11
SREBF1-219ENST00000580540 GYS1P13807 737 aa21.99■■□□□ 1.11
SREBF1-219ENST00000580540 WDR43Q15061 677 aaKnown RBP eCLIP21.99■■□□□ 1.11
SREBF1-219ENST00000580540 CD2APQ9Y5K6 639 aa21.99■■□□□ 1.11
SREBF1-219ENST00000580540 SIPA1L3O60292 1781 aaPredicted RBP21.99■■□□□ 1.11
SREBF1-219ENST00000580540 ZNF316A6NFI3 1004 aaPredicted RBP21.98■■□□□ 1.11
SREBF1-219ENST00000580540 ZPR1O75312 459 aa21.98■■□□□ 1.11
SREBF1-219ENST00000580540 TEX13AQ9BXU3 409 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms