RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 ZCRB1Q8TBF4 217 aaKnown RBP16.19■□□□□ 0.18
CDK5RAP3-217ENST00000580287 PDE4AP27815 886 aa16.19■□□□□ 0.18
CDK5RAP3-217ENST00000580287 SLC39A6Q13433 755 aa16.19■□□□□ 0.18
CDK5RAP3-217ENST00000580287 IFNL2Q8IZJ0 200 aa16.19■□□□□ 0.18
CDK5RAP3-217ENST00000580287 NFATC2IPQ8NCF5 419 aa16.19■□□□□ 0.18
CDK5RAP3-217ENST00000580287 BTBD11A6QL63 1104 aa16.18■□□□□ 0.18
CDK5RAP3-217ENST00000580287 TRIM27P14373 513 aa16.18■□□□□ 0.18
CDK5RAP3-217ENST00000580287 CCDC9Q9Y3X0 531 aaKnown RBP16.17■□□□□ 0.18
CDK5RAP3-217ENST00000580287 ABCC6O95255 1503 aa16.17■□□□□ 0.18
CDK5RAP3-217ENST00000580287 MRPL50Q8N5N7 158 aaKnown RBP16.17■□□□□ 0.18
CDK5RAP3-217ENST00000580287 NGLY1Q96IV0 654 aa16.16■□□□□ 0.18
CDK5RAP3-217ENST00000580287 IPO9Q96P70 1041 aaKnown RBP16.16■□□□□ 0.18
CDK5RAP3-217ENST00000580287 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.16■□□□□ 0.188e-10■□□□□ 11
CDK5RAP3-217ENST00000580287 KDM6AO15550 1401 aaPredicted RBP16.16■□□□□ 0.18
CDK5RAP3-217ENST00000580287 PRAMEF22A3QJZ6 481 aa16.16■□□□□ 0.18
CDK5RAP3-217ENST00000580287 ZKSCAN2Q63HK3 967 aa16.16■□□□□ 0.18
CDK5RAP3-217ENST00000580287 OVOS2A0A0G2JMS6 1433 aa16.16■□□□□ 0.18
CDK5RAP3-217ENST00000580287 COL22A1Q8NFW1 1626 aaPredicted RBP16.15■□□□□ 0.18
CDK5RAP3-217ENST00000580287 PLCB2Q00722 1185 aa16.15■□□□□ 0.18
CDK5RAP3-217ENST00000580287 JCADQ9P266 1359 aa16.15■□□□□ 0.18
CDK5RAP3-217ENST00000580287 EIF2S2P20042 333 aaKnown RBP16.15■□□□□ 0.18
CDK5RAP3-217ENST00000580287 ALDH1L2Q3SY69 923 aa16.15■□□□□ 0.18
CDK5RAP3-217ENST00000580287 ATF7IPQ6VMQ6 1270 aa16.15■□□□□ 0.18
CDK5RAP3-217ENST00000580287 EIF4A1P60842 406 aaKnown RBP16.14■□□□□ 0.17
CDK5RAP3-217ENST00000580287 SLC4A2P04920 1241 aa16.14■□□□□ 0.17
CDK5RAP3-217ENST00000580287 PDE3AQ14432 1141 aa16.14■□□□□ 0.17
CDK5RAP3-217ENST00000580287 FTSJ3Q8IY81 847 aaKnown RBP16.14■□□□□ 0.17
CDK5RAP3-217ENST00000580287 SLC52A2Q9HAB3 445 aa16.14■□□□□ 0.17
CDK5RAP3-217ENST00000580287 G2E3Q7L622 706 aa16.13■□□□□ 0.17
CDK5RAP3-217ENST00000580287 DZIP1LQ8IYY4 767 aaKnown RBP16.13■□□□□ 0.17
CDK5RAP3-217ENST00000580287 DCAF5Q96JK2 942 aa16.13■□□□□ 0.17
CDK5RAP3-217ENST00000580287 BACH2Q9BYV9 841 aa16.12■□□□□ 0.17
CDK5RAP3-217ENST00000580287 ZBTB47Q9UFB7 747 aaPredicted RBP16.12■□□□□ 0.17
CDK5RAP3-217ENST00000580287 CENPQQ7L2Z9 268 aaPredicted RBP16.12■□□□□ 0.17
CDK5RAP3-217ENST00000580287 TMEM57Q8N5G2 664 aa16.12■□□□□ 0.17
CDK5RAP3-217ENST00000580287 ANXA1P04083 346 aa16.11■□□□□ 0.17
CDK5RAP3-217ENST00000580287 CABP4P57796 275 aa16.11■□□□□ 0.17
CDK5RAP3-217ENST00000580287 PCDH11XQ9BZA7 1347 aa16.11■□□□□ 0.17
CDK5RAP3-217ENST00000580287 PCDH11YQ9BZA8 1340 aa16.11■□□□□ 0.17
CDK5RAP3-217ENST00000580287 COL14A1Q05707 1796 aaKnown RBP16.11■□□□□ 0.17
CDK5RAP3-217ENST00000580287 ZNF428Q96B54 188 aa16.11■□□□□ 0.17
CDK5RAP3-217ENST00000580287 LRRC37A3O60309 1634 aa16.11■□□□□ 0.17
CDK5RAP3-217ENST00000580287 SPATA31A1Q5TZJ5 1347 aa16.1■□□□□ 0.17
CDK5RAP3-217ENST00000580287 ITPRIPQ8IWB1 547 aa16.1■□□□□ 0.17
CDK5RAP3-217ENST00000580287 KIF16BQ96L93 1317 aa16.1■□□□□ 0.17
CDK5RAP3-217ENST00000580287 ZNF790Q6PG37 636 aa16.1■□□□□ 0.17
CDK5RAP3-217ENST00000580287 KDM2BQ8NHM5 1336 aa16.09■□□□□ 0.17
CDK5RAP3-217ENST00000580287 RGS3P49796 1198 aa16.09■□□□□ 0.17
CDK5RAP3-217ENST00000580287 LRP6O75581 1613 aa16.09■□□□□ 0.17
CDK5RAP3-217ENST00000580287 HDGFL1Q5TGJ6 251 aa16.09■□□□□ 0.17
CDK5RAP3-217ENST00000580287 IPO8O15397 1037 aaKnown RBP16.08■□□□□ 0.17
CDK5RAP3-217ENST00000580287 UNC5CLQ8IV45 518 aa16.08■□□□□ 0.17
CDK5RAP3-217ENST00000580287 ZNF496Q96IT1 587 aaPredicted RBP16.08■□□□□ 0.17
CDK5RAP3-217ENST00000580287 BABAM1Q9NWV8 329 aa16.08■□□□□ 0.17
CDK5RAP3-217ENST00000580287 F6X3S4 739 aa16.08■□□□□ 0.16
CDK5RAP3-217ENST00000580287 EXOC5O00471 708 aa16.08■□□□□ 0.16
CDK5RAP3-217ENST00000580287 FAM98CQ17RN3 349 aaKnown RBP16.08■□□□□ 0.16
CDK5RAP3-217ENST00000580287 HSP90AB1P08238 724 aaKnown RBP16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 BRPF1P55201 1214 aaPredicted RBP16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 MVPQ14764 893 aaKnown RBP16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 MEX3CQ5U5Q3 659 aaKnown RBP16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 SPATA31A5Q5VU36 1347 aa16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 SPATA31A7Q8IWB4 1347 aa16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 GIGYF1O75420 1035 aaPredicted RBP16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 MS4A1P11836 297 aa16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PHAXQ9H814 394 aaKnown RBP16.07■□□□□ 0.16
CDK5RAP3-217ENST00000580287 SLIT2O94813 1529 aa16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 A0A0G2JS52 829 aa16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PIP4K2AP48426 406 aaPredicted RBP16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 CHPF2Q9P2E5 772 aa16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 USP21Q9UK80 565 aa16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 BCL9LQ86UU0 1499 aa16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 SLC4A3P48751 1232 aa16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 CCDC30Q5VVM6 783 aa16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 SYTL4Q96C24 671 aaPredicted RBP16.06■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PTCD1O75127 700 aaKnown RBP16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 NKX1-1Q15270 411 aaPredicted RBP16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 STK31Q9BXU1 1019 aa16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 DISP2A7MBM2 1401 aa16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PROSER3Q2NL68 480 aa16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PCDHB15Q9Y5E8 787 aa16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PLCH1Q4KWH8 1693 aa16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 SPATA31A6Q5VVP1 1343 aa16.05■□□□□ 0.16
CDK5RAP3-217ENST00000580287 FNBP4Q8N3X1 1017 aaPredicted RBP16.04■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PKD1L3Q7Z443 1732 aa16.04■□□□□ 0.16
CDK5RAP3-217ENST00000580287 DDB1Q16531 1140 aa16.04■□□□□ 0.16
CDK5RAP3-217ENST00000580287 SLC4A10Q6U841 1118 aa16.04■□□□□ 0.16
CDK5RAP3-217ENST00000580287 TTC5Q8N0Z6 440 aa16.04■□□□□ 0.16
CDK5RAP3-217ENST00000580287 USP16Q9Y5T5 823 aa16.04■□□□□ 0.16
CDK5RAP3-217ENST00000580287 IGHDP01880 384 aa16.03■□□□□ 0.16
CDK5RAP3-217ENST00000580287 FLIIQ13045 1269 aa16.03■□□□□ 0.16
CDK5RAP3-217ENST00000580287 ARHGAP45Q92619 1136 aa16.03■□□□□ 0.16
CDK5RAP3-217ENST00000580287 ACSBG1Q96GR2 724 aa16.03■□□□□ 0.16
CDK5RAP3-217ENST00000580287 FKBP5Q13451 457 aaPredicted RBP16.02■□□□□ 0.16
CDK5RAP3-217ENST00000580287 PIGBQ92521 554 aa16.02■□□□□ 0.16
CDK5RAP3-217ENST00000580287 C1orf115Q9H7X2 142 aa16.02■□□□□ 0.16
CDK5RAP3-217ENST00000580287 ASAP1Q9ULH1 1129 aa16.02■□□□□ 0.16
CDK5RAP3-217ENST00000580287 ERVV-2B6SEH9 535 aa16.02■□□□□ 0.15
CDK5RAP3-217ENST00000580287 FAM182BQ5T319 152 aa16.02■□□□□ 0.15
CDK5RAP3-217ENST00000580287 MARCH10Q8NA82 808 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms