RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 C4BP0C0L5 1744 aa19.31■□□□□ 0.68
MKS1-207ENST00000578789 KCNQ4P56696 695 aa19.31■□□□□ 0.68
MKS1-207ENST00000578789 CABP4P57796 275 aa19.31■□□□□ 0.68
MKS1-207ENST00000578789 PRKRIP1Q9H875 184 aaPredicted RBP19.31■□□□□ 0.68
MKS1-207ENST00000578789 ATG3Q9NT62 314 aa19.31■□□□□ 0.68
MKS1-207ENST00000578789 ASAP1Q9ULH1 1129 aa19.31■□□□□ 0.68
MKS1-207ENST00000578789 SIPA1L3O60292 1781 aaPredicted RBP19.31■□□□□ 0.68
MKS1-207ENST00000578789 RNMTO43148 476 aaKnown RBP19.3■□□□□ 0.68
MKS1-207ENST00000578789 HMGB2P26583 209 aaKnown RBP19.3■□□□□ 0.68
MKS1-207ENST00000578789 PHACTR3Q96KR7 559 aa19.3■□□□□ 0.68
MKS1-207ENST00000578789 LOC102724428A0A0B4J2F2 783 aa19.29■□□□□ 0.68
MKS1-207ENST00000578789 SIK1P57059 783 aa19.29■□□□□ 0.68
MKS1-207ENST00000578789 COL5A3P25940 1745 aaPredicted RBP19.28■□□□□ 0.68
MKS1-207ENST00000578789 SLC52A2Q9HAB3 445 aa19.28■□□□□ 0.68
MKS1-207ENST00000578789 LGR6Q9HBX8 967 aa19.28■□□□□ 0.68
MKS1-207ENST00000578789 NFATC2IPQ8NCF5 419 aa19.27■□□□□ 0.68
MKS1-207ENST00000578789 UBR2Q8IWV8 1755 aa19.27■□□□□ 0.67
MKS1-207ENST00000578789 UBR3Q6ZT12 1888 aa19.26■□□□□ 0.67
MKS1-207ENST00000578789 COL24A1Q17RW2 1714 aa19.26■□□□□ 0.67
MKS1-207ENST00000578789 GNAT3A8MTJ3 354 aa19.26■□□□□ 0.67
MKS1-207ENST00000578789 PDGFDQ9GZP0 370 aaPredicted RBP19.26■□□□□ 0.67
MKS1-207ENST00000578789 CEMIPQ8WUJ3 1361 aa19.26■□□□□ 0.67
MKS1-207ENST00000578789 TJP1Q07157 1748 aa19.25■□□□□ 0.67
MKS1-207ENST00000578789 DLG5Q8TDM6 1919 aa19.25■□□□□ 0.67
MKS1-207ENST00000578789 PNPLA7Q6ZV29 1317 aa19.25■□□□□ 0.67
MKS1-207ENST00000578789 PLEKHF1Q96S99 279 aa19.24■□□□□ 0.67
MKS1-207ENST00000578789 KCPQ6ZWJ8 1503 aa19.24■□□□□ 0.67
MKS1-207ENST00000578789 ITPK1Q13572 414 aa19.23■□□□□ 0.67
MKS1-207ENST00000578789 LINC00116Q8NCU8 138 aa19.23■□□□□ 0.67
MKS1-207ENST00000578789 IL17REQ8NFR9 667 aa19.23■□□□□ 0.67
MKS1-207ENST00000578789 SLC4A9Q96Q91 983 aa19.23■□□□□ 0.67
MKS1-207ENST00000578789 TFCP2L1Q9NZI6 479 aa19.23■□□□□ 0.67
MKS1-207ENST00000578789 ATP6V1AP38606 617 aa19.22■□□□□ 0.67
MKS1-207ENST00000578789 PNNQ9H307 717 aaKnown RBP19.22■□□□□ 0.67
MKS1-207ENST00000578789 SPON1Q9HCB6 807 aa19.22■□□□□ 0.67
MKS1-207ENST00000578789 RBM42Q9BTD8 480 aaKnown RBP19.21■□□□□ 0.67
MKS1-207ENST00000578789 HTATSF1O43719 755 aaKnown RBP19.2■□□□□ 0.66
MKS1-207ENST00000578789 ZBTB7AO95365 584 aa19.2■□□□□ 0.66
MKS1-207ENST00000578789 NEFMP07197 916 aa19.2■□□□□ 0.66
MKS1-207ENST00000578789 MTFR1LQ9H019 292 aa19.2■□□□□ 0.66
MKS1-207ENST00000578789 TEFQ10587 303 aa19.19■□□□□ 0.66
MKS1-207ENST00000578789 SLC16A10Q8TF71 515 aa19.19■□□□□ 0.66
MKS1-207ENST00000578789 AK7Q96M32 723 aa19.19■□□□□ 0.66
MKS1-207ENST00000578789 CNTNAP4Q9C0A0 1308 aa19.19■□□□□ 0.66
MKS1-207ENST00000578789 MAPK8IP3Q9UPT6 1336 aa19.18■□□□□ 0.66
MKS1-207ENST00000578789 MYH14Q7Z406 1995 aaKnown RBP19.17■□□□□ 0.66
MKS1-207ENST00000578789 PTCD1O75127 700 aaKnown RBP19.17■□□□□ 0.66
MKS1-207ENST00000578789 PTGER2P43116 358 aa19.17■□□□□ 0.66
MKS1-207ENST00000578789 SLC39A6Q13433 755 aa19.17■□□□□ 0.66
MKS1-207ENST00000578789 NFE2L2Q16236 605 aa19.17■□□□□ 0.66
MKS1-207ENST00000578789 FLAD1Q8NFF5 587 aa19.17■□□□□ 0.66
MKS1-207ENST00000578789 RTF1Q92541 710 aaKnown RBP19.17■□□□□ 0.66
MKS1-207ENST00000578789 AMIGO3Q86WK7 504 aa19.16■□□□□ 0.66
MKS1-207ENST00000578789 COL23A1Q86Y22 540 aaPredicted RBP19.16■□□□□ 0.66
MKS1-207ENST00000578789 SGIP1Q9BQI5 828 aa19.16■□□□□ 0.66
MKS1-207ENST00000578789 SSFA2P28290 1259 aa19.15■□□□□ 0.66
MKS1-207ENST00000578789 WDR43Q15061 677 aaKnown RBP eCLIP19.15■□□□□ 0.66
MKS1-207ENST00000578789 RC3H1Q5TC82 1133 aaKnown RBP19.15■□□□□ 0.66
MKS1-207ENST00000578789 MCM10Q7L590 875 aa19.15■□□□□ 0.66
MKS1-207ENST00000578789 SRCAPQ6ZRS2 3230 aa19.15■□□□□ 0.66
MKS1-207ENST00000578789 GNPATO15228 680 aa19.14■□□□□ 0.65
MKS1-207ENST00000578789 VSIG10Q8N0Z9 540 aa19.14■□□□□ 0.65
MKS1-207ENST00000578789 ATF5Q9Y2D1 282 aaPredicted RBP19.14■□□□□ 0.65
MKS1-207ENST00000578789 C4AP0C0L4 1744 aa19.14■□□□□ 0.65
MKS1-207ENST00000578789 ZNF790Q6PG37 636 aa19.13■□□□□ 0.65
MKS1-207ENST00000578789 TTC5Q8N0Z6 440 aa19.13■□□□□ 0.65
MKS1-207ENST00000578789 KDM3BQ7LBC6 1761 aa19.13■□□□□ 0.65
MKS1-207ENST00000578789 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.12■□□□□ 0.65
MKS1-207ENST00000578789 ANP32CO43423 234 aa19.12■□□□□ 0.65
MKS1-207ENST00000578789 DCTN1Q14203 1278 aa19.12■□□□□ 0.65
MKS1-207ENST00000578789 ADAMTS8Q9UP79 889 aa19.12■□□□□ 0.65
MKS1-207ENST00000578789 HEG1Q9ULI3 1381 aa19.11■□□□□ 0.65
MKS1-207ENST00000578789 DNAJC10Q8IXB1 793 aa19.11■□□□□ 0.65
MKS1-207ENST00000578789 BTBD11A6QL63 1104 aa19.1■□□□□ 0.65
MKS1-207ENST00000578789 RPS6KA4O75676 772 aa19.1■□□□□ 0.65
MKS1-207ENST00000578789 PHF14O94880 888 aa19.1■□□□□ 0.65
MKS1-207ENST00000578789 CRKLP46109 303 aaKnown RBP19.1■□□□□ 0.65
MKS1-207ENST00000578789 RUNDC1Q96C34 613 aa19.1■□□□□ 0.65
MKS1-207ENST00000578789 PPP1R1BQ9UD71 204 aaPredicted RBP19.1■□□□□ 0.65
MKS1-207ENST00000578789 RTCBQ9Y3I0 505 aaKnown RBP19.1■□□□□ 0.65
MKS1-207ENST00000578789 TMPOP42166 694 aaKnown RBP19.09■□□□□ 0.65
MKS1-207ENST00000578789 SMIM5Q71RC9 77 aa19.09■□□□□ 0.65
MKS1-207ENST00000578789 CCDC146Q8IYE0 955 aa19.09■□□□□ 0.65
MKS1-207ENST00000578789 ZNF496Q96IT1 587 aaPredicted RBP19.09■□□□□ 0.65
MKS1-207ENST00000578789 CYP19A1P11511 503 aaPredicted RBP19.08■□□□□ 0.64
MKS1-207ENST00000578789 CCDC184Q52MB2 194 aa19.08■□□□□ 0.64
MKS1-207ENST00000578789 FMNL2Q96PY5 1086 aa19.08■□□□□ 0.64
MKS1-207ENST00000578789 LAMB4A4D0S4 1761 aa19.07■□□□□ 0.64
MKS1-207ENST00000578789 KCNQ3O43525 872 aa19.07■□□□□ 0.64
MKS1-207ENST00000578789 POLD1P28340 1107 aa19.07■□□□□ 0.64
MKS1-207ENST00000578789 RIPK4P57078 832 aa19.07■□□□□ 0.64
MKS1-207ENST00000578789 LMOD3Q0VAK6 560 aa19.07■□□□□ 0.64
MKS1-207ENST00000578789 TAF7Q15545 349 aaPredicted RBP19.07■□□□□ 0.64
MKS1-207ENST00000578789 INTS5Q6P9B9 1019 aaKnown RBP19.07■□□□□ 0.64
MKS1-207ENST00000578789 CCDC87Q9NVE4 849 aa19.07■□□□□ 0.64
MKS1-207ENST00000578789 TRAPPC3LQ5T215 181 aa19.06■□□□□ 0.64
MKS1-207ENST00000578789 ARXQ96QS3 562 aa19.06■□□□□ 0.64
MKS1-207ENST00000578789 PNISRQ8TF01 805 aaKnown RBP19.05■□□□□ 0.64
MKS1-207ENST00000578789 THUMPD2Q9BTF0 503 aaKnown RBP19.05■□□□□ 0.64
MKS1-207ENST00000578789 TEX13AQ9BXU3 409 aaPredicted RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms