RNA–Protein interactions for RNA: ENST00000578709.5

ERBB2-209, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 4

Gene ERBB2, Length 559 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-209	ENST00000578709	RUNDC1	Q96C34	613 aa		31.4	■■■□□ 2.62
ERBB2-209	ENST00000578709	ASAP1	Q9ULH1	1129 aa		31.4	■■■□□ 2.62
ERBB2-209	ENST00000578709	CCDC146	Q8IYE0	955 aa		31.39	■■■□□ 2.62
ERBB2-209	ENST00000578709	ATG3	Q9NT62	314 aa		31.39	■■■□□ 2.62
ERBB2-209	ENST00000578709	DIEXF	Q68CQ4	756 aa	Known RBP	31.38	■■■□□ 2.61
ERBB2-209	ENST00000578709	RTF1	Q92541	710 aa	Known RBP	31.37	■■■□□ 2.61
ERBB2-209	ENST00000578709	LRRC4B	Q9NT99	713 aa		31.37	■■■□□ 2.61
ERBB2-209	ENST00000578709	SIPA1L3	O60292	1781 aa	Predicted RBP	31.35	■■■□□ 2.61
ERBB2-209	ENST00000578709	TMPO	P42166	694 aa	Known RBP	31.34	■■■□□ 2.61
ERBB2-209	ENST00000578709	CCNL1	Q9UK58	526 aa	Predicted RBP	31.34	■■■□□ 2.61
ERBB2-209	ENST00000578709	PAPPA	Q13219	1627 aa		31.34	■■■□□ 2.61
ERBB2-209	ENST00000578709	TEF	Q10587	303 aa		31.33	■■■□□ 2.61
ERBB2-209	ENST00000578709	MCM10	Q7L590	875 aa		31.33	■■■□□ 2.61
ERBB2-209	ENST00000578709	NBPF14	Q5TI25	921 aa		31.32	■■■□□ 2.6
ERBB2-209	ENST00000578709	LOC102724428	A0A0B4J2F2	783 aa		31.3	■■■□□ 2.6
ERBB2-209	ENST00000578709	KCNQ4	P56696	695 aa		31.3	■■■□□ 2.6
ERBB2-209	ENST00000578709	SIK1	P57059	783 aa		31.3	■■■□□ 2.6
ERBB2-209	ENST00000578709	RIPK4	P57078	832 aa		31.3	■■■□□ 2.6
ERBB2-209	ENST00000578709	DCTN1	Q14203	1278 aa		31.3	■■■□□ 2.6
ERBB2-209	ENST00000578709	ANO8	Q9HCE9	1232 aa	Predicted RBP	31.29	■■■□□ 2.6
ERBB2-209	ENST00000578709	ZNF831	Q5JPB2	1677 aa		31.29	■■■□□ 2.6
ERBB2-209	ENST00000578709	TAF1L	Q8IZX4	1826 aa		31.27	■■■□□ 2.6
ERBB2-209	ENST00000578709	CCER2	I3L3R5	266 aa		31.27	■■■□□ 2.6
ERBB2-209	ENST00000578709	HMGB2	P26583	209 aa	Known RBP	31.26	■■■□□ 2.59
ERBB2-209	ENST00000578709	LMOD3	Q0VAK6	560 aa		31.26	■■■□□ 2.59
ERBB2-209	ENST00000578709	RRP7A	Q9Y3A4	280 aa	Known RBP	31.26	■■■□□ 2.59
ERBB2-209	ENST00000578709	C5	P01031	1676 aa		31.25	■■■□□ 2.59
ERBB2-209	ENST00000578709	SLC39A6	Q13433	755 aa		31.25	■■■□□ 2.59
ERBB2-209	ENST00000578709	SLC4A9	Q96Q91	983 aa		31.24	■■■□□ 2.59
ERBB2-209	ENST00000578709	UBR2	Q8IWV8	1755 aa		31.23	■■■□□ 2.59
ERBB2-209	ENST00000578709	APAF1	O14727	1248 aa		31.23	■■■□□ 2.59
ERBB2-209	ENST00000578709	AKT1S1	Q96B36	256 aa		31.23	■■■□□ 2.59
ERBB2-209	ENST00000578709	RBM42	Q9BTD8	480 aa	Known RBP	31.23	■■■□□ 2.59
ERBB2-209	ENST00000578709	STK32B	Q9NY57	414 aa		31.23	■■■□□ 2.59
ERBB2-209	ENST00000578709	KCP	Q6ZWJ8	1503 aa		31.23	■■■□□ 2.59
ERBB2-209	ENST00000578709	PTCD1	O75127	700 aa	Known RBP	31.22	■■■□□ 2.59
ERBB2-209	ENST00000578709	ATP6V1A	P38606	617 aa		31.22	■■■□□ 2.59
ERBB2-209	ENST00000578709	R3HDM1	Q15032	1099 aa	Known RBP	31.22	■■■□□ 2.59
ERBB2-209	ENST00000578709	NEUROD2	Q15784	382 aa		31.22	■■■□□ 2.59
ERBB2-209	ENST00000578709	SLC15A2	Q16348	729 aa		31.22	■■■□□ 2.59
ERBB2-209	ENST00000578709	CIC	Q96RK0	1608 aa	Predicted RBP	31.21	■■■□□ 2.59
ERBB2-209	ENST00000578709	ITPK1	Q13572	414 aa		31.21	■■■□□ 2.59
ERBB2-209	ENST00000578709	ZNF827	Q17R98	1081 aa		31.21	■■■□□ 2.59
ERBB2-209	ENST00000578709	ZNF790	Q6PG37	636 aa		31.21	■■■□□ 2.59
ERBB2-209	ENST00000578709	THUMPD2	Q9BTF0	503 aa	Known RBP	31.21	■■■□□ 2.59
ERBB2-209	ENST00000578709	TRIM35	Q9UPQ4	493 aa		31.21	■■■□□ 2.59
ERBB2-209	ENST00000578709	PSD	A5PKW4	1024 aa	Predicted RBP	31.2	■■■□□ 2.59
ERBB2-209	ENST00000578709	BTBD11	A6QL63	1104 aa		31.2	■■■□□ 2.59
ERBB2-209	ENST00000578709	TAF7	Q15545	349 aa	Predicted RBP	31.2	■■■□□ 2.59
ERBB2-209	ENST00000578709	FAM9B	Q8IZU0	186 aa		31.18	■■■□□ 2.58
ERBB2-209	ENST00000578709	TTC5	Q8N0Z6	440 aa		31.18	■■■□□ 2.58
ERBB2-209	ENST00000578709	LINC00116	Q8NCU8	138 aa		31.18	■■■□□ 2.58
ERBB2-209	ENST00000578709	C4B	P0C0L5	1744 aa		31.18	■■■□□ 2.58
ERBB2-209	ENST00000578709	MIER1	Q8N108	512 aa		31.17	■■■□□ 2.58
ERBB2-209	ENST00000578709	COL5A3	P25940	1745 aa	Predicted RBP	31.15	■■■□□ 2.58
ERBB2-209	ENST00000578709	TJP1	Q07157	1748 aa		31.15	■■■□□ 2.58
ERBB2-209	ENST00000578709	VSIG10	Q8N0Z9	540 aa		31.15	■■■□□ 2.58
ERBB2-209	ENST00000578709	QSER1	Q2KHR3	1735 aa		31.15	■■■□□ 2.58
ERBB2-209	ENST00000578709	KCNQ3	O43525	872 aa		31.14	■■■□□ 2.58
ERBB2-209	ENST00000578709	ZNF496	Q96IT1	587 aa	Predicted RBP	31.14	■■■□□ 2.58
ERBB2-209	ENST00000578709	KDM3B	Q7LBC6	1761 aa		31.12	■■■□□ 2.57
ERBB2-209	ENST00000578709	TUBGCP6	Q96RT7	1819 aa		31.12	■■■□□ 2.57
ERBB2-209	ENST00000578709	NCBP3	Q53F19	620 aa	Known RBP	31.12	■■■□□ 2.57
ERBB2-209	ENST00000578709	FMNL2	Q96PY5	1086 aa		31.11	■■■□□ 2.57
ERBB2-209	ENST00000578709	BABAM1	Q9NWV8	329 aa		31.11	■■■□□ 2.57
ERBB2-209	ENST00000578709	TFCP2L1	Q9NZI6	479 aa		31.11	■■■□□ 2.57
ERBB2-209	ENST00000578709	HEG1	Q9ULI3	1381 aa		31.11	■■■□□ 2.57
ERBB2-209	ENST00000578709	MIS18A	Q9NYP9	233 aa		31.1	■■■□□ 2.57
ERBB2-209	ENST00000578709	CASZ1	Q86V15	1759 aa		31.1	■■■□□ 2.57
ERBB2-209	ENST00000578709	CNTNAP4	Q9C0A0	1308 aa		31.09	■■■□□ 2.57
ERBB2-209	ENST00000578709	RC3H1	Q5TC82	1133 aa	Known RBP	31.09	■■■□□ 2.57
ERBB2-209	ENST00000578709	DNAJC10	Q8IXB1	793 aa		31.09	■■■□□ 2.57
ERBB2-209	ENST00000578709	AK7	Q96M32	723 aa		31.09	■■■□□ 2.57
ERBB2-209	ENST00000578709	MYH14	Q7Z406	1995 aa	Known RBP	31.08	■■■□□ 2.57
ERBB2-209	ENST00000578709	UBR3	Q6ZT12	1888 aa		31.08	■■■□□ 2.57
ERBB2-209	ENST00000578709	CCDC27	Q2M243	656 aa		31.08	■■■□□ 2.57
ERBB2-209	ENST00000578709	PNPLA7	Q6ZV29	1317 aa		31.07	■■■□□ 2.56
ERBB2-209	ENST00000578709	PDGFD	Q9GZP0	370 aa	Predicted RBP	31.05	■■■□□ 2.56
ERBB2-209	ENST00000578709	CHL1	O00533	1208 aa		31.04	■■■□□ 2.56
ERBB2-209	ENST00000578709	CYP19A1	P11511	503 aa	Predicted RBP	31.04	■■■□□ 2.56
ERBB2-209	ENST00000578709	CRKL	P46109	303 aa	Known RBP	31.04	■■■□□ 2.56
ERBB2-209	ENST00000578709	TEX13A	Q9BXU3	409 aa	Predicted RBP	31.04	■■■□□ 2.56
ERBB2-209	ENST00000578709	TSPYL4	Q9UJ04	414 aa		31.04	■■■□□ 2.56
ERBB2-209	ENST00000578709	CALD1	Q05682	793 aa	Known RBP	31.03	■■■□□ 2.56
ERBB2-209	ENST00000578709	AMIGO3	Q86WK7	504 aa		31.03	■■■□□ 2.56
ERBB2-209	ENST00000578709	GNPAT	O15228	680 aa		31.02	■■■□□ 2.56
ERBB2-209	ENST00000578709	EIF4A1	P60842	406 aa	Known RBP	31.02	■■■□□ 2.56
ERBB2-209	ENST00000578709	FLAD1	Q8NFF5	587 aa		31.02	■■■□□ 2.56
ERBB2-209	ENST00000578709	SNRPA1	P09661	255 aa	Known RBP	31.01	■■■□□ 2.55
ERBB2-209	ENST00000578709	SSFA2	P28290	1259 aa		31.01	■■■□□ 2.55
ERBB2-209	ENST00000578709	INTS5	Q6P9B9	1019 aa	Known RBP	31.01	■■■□□ 2.55
ERBB2-209	ENST00000578709	WWC1	Q8IX03	1113 aa		31.01	■■■□□ 2.55
ERBB2-209	ENST00000578709	NGEF	Q8N5V2	710 aa		31.01	■■■□□ 2.55
ERBB2-209	ENST00000578709	CFAP44	Q96MT7	982 aa		31.01	■■■□□ 2.55
ERBB2-209	ENST00000578709	SENP3-EIF4A1	A0A087X0R7	540 aa		31	■■■□□ 2.55
ERBB2-209	ENST00000578709	STARD3NL	O95772	234 aa		31	■■■□□ 2.55
ERBB2-209	ENST00000578709	CCDC87	Q9NVE4	849 aa		31	■■■□□ 2.55
ERBB2-209	ENST00000578709	RPS6KA4	O75676	772 aa		30.99	■■■□□ 2.55
ERBB2-209	ENST00000578709	ZNF853	P0CG23	659 aa		30.99	■■■□□ 2.55
ERBB2-209	ENST00000578709	COL23A1	Q86Y22	540 aa	Predicted RBP	30.99	■■■□□ 2.55

Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms