RNA–Protein interactions for RNA: ENST00000578501.5

CSNK1D-208, Transcript of casein kinase 1 delta, human

TSL 2

Gene CSNK1D, Length 1,124 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSNK1D-208	ENST00000578501	DDX10	Q13206	875 aa	Known RBP	18.32	■□□□□ 0.52
CSNK1D-208	ENST00000578501	CCNL1	Q9UK58	526 aa	Predicted RBP	18.32	■□□□□ 0.52
CSNK1D-208	ENST00000578501	U2SURP	O15042	1029 aa	Known RBP	18.31	■□□□□ 0.52
CSNK1D-208	ENST00000578501	AKAP4	Q5JQC9	854 aa		18.31	■□□□□ 0.52
CSNK1D-208	ENST00000578501	NLGN2	Q8NFZ4	835 aa		18.31	■□□□□ 0.52
CSNK1D-208	ENST00000578501	NUDC	Q9Y266	331 aa		18.31	■□□□□ 0.52
CSNK1D-208	ENST00000578501	KDM6A	O15550	1401 aa	Predicted RBP	18.31	■□□□□ 0.52
CSNK1D-208	ENST00000578501	QSER1	Q2KHR3	1735 aa		18.3	■□□□□ 0.52
CSNK1D-208	ENST00000578501	KCNQ4	P56696	695 aa		18.29	■□□□□ 0.52
CSNK1D-208	ENST00000578501	RALBP1	Q15311	655 aa		18.29	■□□□□ 0.52
CSNK1D-208	ENST00000578501	GPBP1L1	Q9HC44	474 aa	Predicted RBP	18.29	■□□□□ 0.52
CSNK1D-208	ENST00000578501	YBX3	P16989	372 aa	Known RBP eCLIP	18.28	■□□□□ 0.52	2e-6	■□□□□ 10.5
CSNK1D-208	ENST00000578501	MTHFSD	Q2M296	383 aa	Known RBP	18.28	■□□□□ 0.52
CSNK1D-208	ENST00000578501	ASAP1	Q9ULH1	1129 aa		18.28	■□□□□ 0.52
CSNK1D-208	ENST00000578501	COL24A1	Q17RW2	1714 aa		18.28	■□□□□ 0.52
CSNK1D-208	ENST00000578501	ATP10D	Q9P241	1426 aa		18.27	■□□□□ 0.52
CSNK1D-208	ENST00000578501	HSPA6	P17066	643 aa		18.27	■□□□□ 0.52
CSNK1D-208	ENST00000578501	CABP4	P57796	275 aa		18.27	■□□□□ 0.52
CSNK1D-208	ENST00000578501	ATG3	Q9NT62	314 aa		18.27	■□□□□ 0.52
CSNK1D-208	ENST00000578501	LOC102724428	A0A0B4J2F2	783 aa		18.26	■□□□□ 0.51
CSNK1D-208	ENST00000578501	SIK1	P57059	783 aa		18.26	■□□□□ 0.51
CSNK1D-208	ENST00000578501	RSPH6A	Q9H0K4	717 aa		18.26	■□□□□ 0.51
CSNK1D-208	ENST00000578501	FCHSD2	O94868	740 aa		18.25	■□□□□ 0.51
CSNK1D-208	ENST00000578501	GAS2L2	Q8NHY3	880 aa		18.25	■□□□□ 0.51
CSNK1D-208	ENST00000578501	MSH5	O43196	834 aa		18.24	■□□□□ 0.51
CSNK1D-208	ENST00000578501	U2AF1L5	P0DN76	240 aa	Predicted RBP	18.24	■□□□□ 0.51
CSNK1D-208	ENST00000578501	U2AF1	Q01081	240 aa	Known RBP eCLIP	18.24	■□□□□ 0.51	2e-6	■■□□□ 12.1
CSNK1D-208	ENST00000578501	NFATC2IP	Q8NCF5	419 aa		18.24	■□□□□ 0.51
CSNK1D-208	ENST00000578501	CD2AP	Q9Y5K6	639 aa		18.23	■□□□□ 0.51
CSNK1D-208	ENST00000578501	SCN11A	Q9UI33	1791 aa		18.22	■□□□□ 0.51
CSNK1D-208	ENST00000578501	C5	P01031	1676 aa		18.22	■□□□□ 0.51
CSNK1D-208	ENST00000578501	RNMT	O43148	476 aa	Known RBP	18.22	■□□□□ 0.51
CSNK1D-208	ENST00000578501	PRKAR2B	P31323	418 aa		18.22	■□□□□ 0.51
CSNK1D-208	ENST00000578501	LGR6	Q9HBX8	967 aa		18.22	■□□□□ 0.51
CSNK1D-208	ENST00000578501	SLC52A2	Q9HAB3	445 aa		18.21	■□□□□ 0.51
CSNK1D-208	ENST00000578501	ADAMTS7	Q9UKP4	1686 aa		18.21	■□□□□ 0.51
CSNK1D-208	ENST00000578501	MRC1	P22897	1456 aa		18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	ZNF831	Q5JPB2	1677 aa		18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	GNAT3	A8MTJ3	354 aa		18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	ATP6V1A	P38606	617 aa		18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	COL23A1	Q86Y22	540 aa	Predicted RBP	18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	FLAD1	Q8NFF5	587 aa		18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	PHACTR3	Q96KR7	559 aa		18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	TAF1L	Q8IZX4	1826 aa		18.2	■□□□□ 0.5
CSNK1D-208	ENST00000578501	ITPK1	Q13572	414 aa		18.19	■□□□□ 0.5
CSNK1D-208	ENST00000578501	MYBBP1A	Q9BQG0	1328 aa	Known RBP	18.19	■□□□□ 0.5
CSNK1D-208	ENST00000578501	C4B	P0C0L5	1744 aa		18.18	■□□□□ 0.5
CSNK1D-208	ENST00000578501	LINC00116	Q8NCU8	138 aa		18.18	■□□□□ 0.5
CSNK1D-208	ENST00000578501	SLC4A9	Q96Q91	983 aa		18.18	■□□□□ 0.5
CSNK1D-208	ENST00000578501	AK7	Q96M32	723 aa		18.17	■□□□□ 0.5
CSNK1D-208	ENST00000578501	RBM42	Q9BTD8	480 aa	Known RBP	18.17	■□□□□ 0.5
CSNK1D-208	ENST00000578501	ADCY9	O60503	1353 aa		18.17	■□□□□ 0.5
CSNK1D-208	ENST00000578501	TUBGCP6	Q96RT7	1819 aa		18.16	■□□□□ 0.5
CSNK1D-208	ENST00000578501	IL17RE	Q8NFR9	667 aa		18.16	■□□□□ 0.5
CSNK1D-208	ENST00000578501	ZNF526	Q8TF50	670 aa	Predicted RBP	18.16	■□□□□ 0.5
CSNK1D-208	ENST00000578501	CEP350	Q5VT06	3117 aa		18.16	■□□□□ 0.5
CSNK1D-208	ENST00000578501	RC3H1	Q5TC82	1133 aa	Known RBP	18.15	■□□□□ 0.5
CSNK1D-208	ENST00000578501	MSL1	Q68DK7	614 aa		18.15	■□□□□ 0.5
CSNK1D-208	ENST00000578501	PNN	Q9H307	717 aa	Known RBP	18.15	■□□□□ 0.5
CSNK1D-208	ENST00000578501	PRKRIP1	Q9H875	184 aa	Predicted RBP	18.15	■□□□□ 0.5
CSNK1D-208	ENST00000578501	CEMIP	Q8WUJ3	1361 aa		18.15	■□□□□ 0.5
CSNK1D-208	ENST00000578501	ZNF316	A6NFI3	1004 aa	Predicted RBP	18.14	■□□□□ 0.49
CSNK1D-208	ENST00000578501	PTCD1	O75127	700 aa	Known RBP	18.14	■□□□□ 0.49
CSNK1D-208	ENST00000578501	SSFA2	P28290	1259 aa		18.14	■□□□□ 0.49
CSNK1D-208	ENST00000578501	PLEKHF1	Q96S99	279 aa		18.14	■□□□□ 0.49
CSNK1D-208	ENST00000578501	GOLGB1	Q14789	3259 aa	Known RBP	18.13	■□□□□ 0.49
CSNK1D-208	ENST00000578501	HTATSF1	O43719	755 aa	Known RBP	18.13	■□□□□ 0.49
CSNK1D-208	ENST00000578501	NEFM	P07197	916 aa		18.13	■□□□□ 0.49
CSNK1D-208	ENST00000578501	VIRMA	Q69YN4	1812 aa	Known RBP	18.13	■□□□□ 0.49
CSNK1D-208	ENST00000578501	CNTNAP4	Q9C0A0	1308 aa		18.13	■□□□□ 0.49
CSNK1D-208	ENST00000578501	APLP1	P51693	650 aa		18.12	■□□□□ 0.49
CSNK1D-208	ENST00000578501	TEF	Q10587	303 aa		18.12	■□□□□ 0.49
CSNK1D-208	ENST00000578501	AMIGO3	Q86WK7	504 aa		18.12	■□□□□ 0.49
CSNK1D-208	ENST00000578501	CIC	Q96RK0	1608 aa	Predicted RBP	18.12	■□□□□ 0.49
CSNK1D-208	ENST00000578501	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.11	■□□□□ 0.49
CSNK1D-208	ENST00000578501	GNPAT	O15228	680 aa		18.11	■□□□□ 0.49
CSNK1D-208	ENST00000578501	SLC39A6	Q13433	755 aa		18.11	■□□□□ 0.49
CSNK1D-208	ENST00000578501	VSIG10	Q8N0Z9	540 aa		18.11	■□□□□ 0.49
CSNK1D-208	ENST00000578501	RTF1	Q92541	710 aa	Known RBP	18.11	■□□□□ 0.49
CSNK1D-208	ENST00000578501	UBR3	Q6ZT12	1888 aa		18.11	■□□□□ 0.49
CSNK1D-208	ENST00000578501	RTCB	Q9Y3I0	505 aa	Known RBP	18.1	■□□□□ 0.49
CSNK1D-208	ENST00000578501	COL5A3	P25940	1745 aa	Predicted RBP	18.09	■□□□□ 0.49
CSNK1D-208	ENST00000578501	KCP	Q6ZWJ8	1503 aa		18.09	■□□□□ 0.49
CSNK1D-208	ENST00000578501	KIF3C	O14782	793 aa		18.09	■□□□□ 0.49
CSNK1D-208	ENST00000578501	ADRA2B	P18089	450 aa		18.09	■□□□□ 0.49
CSNK1D-208	ENST00000578501	RPS6KA4	O75676	772 aa		18.08	■□□□□ 0.48
CSNK1D-208	ENST00000578501	PHF14	O94880	888 aa		18.08	■□□□□ 0.48
CSNK1D-208	ENST00000578501	ZNF790	Q6PG37	636 aa		18.08	■□□□□ 0.48
CSNK1D-208	ENST00000578501	TTC5	Q8N0Z6	440 aa		18.08	■□□□□ 0.48
CSNK1D-208	ENST00000578501	SIPA1L3	O60292	1781 aa	Predicted RBP	18.07	■□□□□ 0.48
CSNK1D-208	ENST00000578501	CRKL	P46109	303 aa	Known RBP	18.07	■□□□□ 0.48
CSNK1D-208	ENST00000578501	NFE2L2	Q16236	605 aa		18.07	■□□□□ 0.48
CSNK1D-208	ENST00000578501	TRAPPC3L	Q5T215	181 aa		18.07	■□□□□ 0.48
CSNK1D-208	ENST00000578501	TJP1	Q07157	1748 aa		18.06	■□□□□ 0.48
CSNK1D-208	ENST00000578501	MAPK8IP3	Q9UPT6	1336 aa		18.06	■□□□□ 0.48
CSNK1D-208	ENST00000578501	SMIM5	Q71RC9	77 aa		18.06	■□□□□ 0.48
CSNK1D-208	ENST00000578501	MCM10	Q7L590	875 aa		18.06	■□□□□ 0.48
CSNK1D-208	ENST00000578501	UBR2	Q8IWV8	1755 aa		18.06	■□□□□ 0.48
CSNK1D-208	ENST00000578501	BTBD11	A6QL63	1104 aa		18.05	■□□□□ 0.48
CSNK1D-208	ENST00000578501	TOMM70	O94826	608 aa		18.05	■□□□□ 0.48

Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms