RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 TATDN2Q93075 761 aa6.84□□□□□ -1.31
VAPA-203ENST00000577539 OCSTAMPQ9BR26 566 aa6.84□□□□□ -1.31
VAPA-203ENST00000577539 TET3O43151 1660 aa6.84□□□□□ -1.31
VAPA-203ENST00000577539 SYNMO15061 1565 aa6.84□□□□□ -1.31
VAPA-203ENST00000577539 RNF17Q9BXT8 1623 aaKnown RBP6.84□□□□□ -1.31
VAPA-203ENST00000577539 TRIM6-TRIM34B2RNG4 842 aa6.84□□□□□ -1.32
VAPA-203ENST00000577539 IDI1Q13907 227 aa6.84□□□□□ -1.32
VAPA-203ENST00000577539 CALR3Q96L12 384 aaKnown RBP6.84□□□□□ -1.32
VAPA-203ENST00000577539 ZNF518AQ6AHZ1 1483 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 IGHDP01880 384 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 DIXDC1Q155Q3 683 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 PROX2Q3B8N5 592 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 NGEFQ8N5V2 710 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 NPATQ14207 1427 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 TRMT2AQ8IZ69 625 aaKnown RBP6.83□□□□□ -1.32
VAPA-203ENST00000577539 RBM46Q8TBY0 533 aaKnown RBP6.83□□□□□ -1.32
VAPA-203ENST00000577539 VAC14Q08AM6 782 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 MLECQ14165 292 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 FTSJ3Q8IY81 847 aaKnown RBP6.83□□□□□ -1.32
VAPA-203ENST00000577539 TNNQ9UQP3 1299 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 USTQ9Y2C2 406 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 IQGAP1P46940 1657 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 ARAP3Q8WWN8 1544 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 MAPK8IP3Q9UPT6 1336 aa6.83□□□□□ -1.32
VAPA-203ENST00000577539 PDE3AQ14432 1141 aa6.82□□□□□ -1.32
VAPA-203ENST00000577539 POLR3AO14802 1390 aaPredicted RBP6.82□□□□□ -1.32
VAPA-203ENST00000577539 PPP1R3GB7ZBB8 358 aa6.82□□□□□ -1.32
VAPA-203ENST00000577539 SEC24BO95487 1268 aa6.82□□□□□ -1.32
VAPA-203ENST00000577539 TXNDC2Q86VQ3 553 aa6.82□□□□□ -1.32
VAPA-203ENST00000577539 DHX37Q8IY37 1157 aaKnown RBP6.82□□□□□ -1.32
VAPA-203ENST00000577539 MYH16Q9H6N6 1097 aa6.82□□□□□ -1.32
VAPA-203ENST00000577539 RPGRIP1LQ68CZ1 1315 aa6.82□□□□□ -1.32
VAPA-203ENST00000577539 TSR2Q969E8 191 aaKnown RBP6.82□□□□□ -1.32
VAPA-203ENST00000577539 NDUFB9Q9Y6M9 179 aa6.82□□□□□ -1.32
VAPA-203ENST00000577539 KDM5AP29375 1690 aaKnown RBP6.82□□□□□ -1.32
VAPA-203ENST00000577539 MYOM2P54296 1465 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 RARSP54136 660 aaKnown RBP6.81□□□□□ -1.32
VAPA-203ENST00000577539 KCNA1Q09470 495 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 CSPP1Q1MSJ5 1256 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 CYB5RLQ6IPT4 315 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 DNAJC14Q6Y2X3 702 aaPredicted RBP6.81□□□□□ -1.32
VAPA-203ENST00000577539 MAP3K4Q9Y6R4 1608 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 CEP152O94986 1710 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 AP1G2O75843 785 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 DKK1O94907 266 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 C8orf34Q49A92 452 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 PRAM1Q96QH2 718 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 GNEQ9Y223 722 aaKnown RBP6.81□□□□□ -1.32
VAPA-203ENST00000577539 MAFBQ9Y5Q3 323 aaPredicted RBP6.81□□□□□ -1.32
VAPA-203ENST00000577539 INO80Q9ULG1 1556 aaPredicted RBP6.81□□□□□ -1.32
VAPA-203ENST00000577539 ABCA6Q8N139 1617 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 SMAPO00193 183 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 DNAJB2P25686 324 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.81□□□□□ -1.32
VAPA-203ENST00000577539 SMC4Q9NTJ3 1288 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 EFCAB6Q5THR3 1501 aa6.81□□□□□ -1.32
VAPA-203ENST00000577539 DDX11L8A8MPP1 907 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 TERF2IPQ9NYB0 399 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 SBNO2Q9Y2G9 1366 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 KDM4AO75164 1064 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 ATG7O95352 703 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 RLBP1P12271 317 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 RBM25P49756 843 aaKnown RBP6.8□□□□□ -1.32
VAPA-203ENST00000577539 HMGB1P09429 215 aaKnown RBP6.8□□□□□ -1.32
VAPA-203ENST00000577539 C3orf67Q6ZVT6 689 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 WDR63Q8IWG1 891 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 PMFBP1Q8TBY8 1022 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 UPF2Q9HAU5 1272 aaKnown RBP6.8□□□□□ -1.32
VAPA-203ENST00000577539 ZSWIM6Q9HCJ5 1215 aa6.8□□□□□ -1.32
VAPA-203ENST00000577539 ABCA9Q8IUA7 1624 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 POGZQ7Z3K3 1410 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 HDGFL2Q7Z4V5 671 aaPredicted RBP6.79□□□□□ -1.32
VAPA-203ENST00000577539 VWDEQ8N2E2 1590 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 EXOSC9Q06265 439 aaKnown RBP6.79□□□□□ -1.32
VAPA-203ENST00000577539 ZBED2Q9BTP6 218 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 KIF1BO60333 1816 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 DEPDC5O75140 1603 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 FBLN1P23142 703 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 NFKBIBQ15653 356 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 ZKSCAN2Q63HK3 967 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 TBC1D9Q6ZT07 1266 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 ITPRIPQ8IWB1 547 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 RWDD1Q9H446 243 aaPredicted RBP6.79□□□□□ -1.32
VAPA-203ENST00000577539 SLC52A1Q9NWF4 448 aa6.79□□□□□ -1.32
VAPA-203ENST00000577539 TFIP11Q9UBB9 837 aaKnown RBP6.79□□□□□ -1.32
VAPA-203ENST00000577539 PPRC1Q5VV67 1664 aaKnown RBP6.78□□□□□ -1.32
VAPA-203ENST00000577539 RIPK4P57078 832 aa6.78□□□□□ -1.32
VAPA-203ENST00000577539 CABP1Q9NZU7 370 aa6.78□□□□□ -1.32
VAPA-203ENST00000577539 USP35Q9P2H5 1018 aa6.78□□□□□ -1.32
VAPA-203ENST00000577539 MROH1Q8NDA8 1641 aa6.78□□□□□ -1.32
VAPA-203ENST00000577539 TMCO4Q5TGY1 634 aa6.78□□□□□ -1.32
VAPA-203ENST00000577539 SLKQ9H2G2 1235 aaPredicted RBP6.78□□□□□ -1.32
VAPA-203ENST00000577539 PDZRN3Q9UPQ7 1066 aa6.78□□□□□ -1.32
VAPA-203ENST00000577539 DIAPH1O60610 1272 aaKnown RBP6.78□□□□□ -1.32
VAPA-203ENST00000577539 DZIP1LQ8IYY4 767 aaKnown RBP6.78□□□□□ -1.32
VAPA-203ENST00000577539 ANKRD36BQ8N2N9 1353 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 KIDINS220Q9ULH0 1771 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 PIK3CDO00329 1044 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 TMPOP42166 694 aaKnown RBP6.77□□□□□ -1.33
VAPA-203ENST00000577539 SYMPKQ92797 1274 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms