RNA–Protein interactions for RNA: ENST00000576348.1

ERCC4-208, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

TSL 2

Gene ERCC4, Length 604 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-208ENST00000576348 TMOD3Q9NYL9 352 aa21.32■■□□□ 1
ERCC4-208ENST00000576348 LRRC37A3O60309 1634 aa21.31■■□□□ 1
ERCC4-208ENST00000576348 SYTL4Q96C24 671 aaPredicted RBP21.31■■□□□ 1
ERCC4-208ENST00000576348 TTC5Q8N0Z6 440 aa21.3■■□□□ 1
ERCC4-208ENST00000576348 RCAN3Q9UKA8 241 aa21.29■■□□□ 1
ERCC4-208ENST00000576348 CT47B1P0C2W7 299 aaPredicted RBP21.28■■□□□ 1
ERCC4-208ENST00000576348 THSD7AQ9UPZ6 1657 aa21.28■■□□□ 1
ERCC4-208ENST00000576348 MRC1P22897 1456 aa21.26■□□□□ 0.99
ERCC4-208ENST00000576348 ACSBG1Q96GR2 724 aa21.26■□□□□ 0.99
ERCC4-208ENST00000576348 ELL2O00472 640 aaPredicted RBP21.25■□□□□ 0.99
ERCC4-208ENST00000576348 PRIM1P49642 420 aaKnown RBP21.25■□□□□ 0.99
ERCC4-208ENST00000576348 TWISTNBQ3B726 338 aaPredicted RBP21.25■□□□□ 0.99
ERCC4-208ENST00000576348 KRT27Q7Z3Y8 459 aa21.25■□□□□ 0.99
ERCC4-208ENST00000576348 SHANK3Q9BYB0 1731 aa21.25■□□□□ 0.99
ERCC4-208ENST00000576348 RGS17Q9UGC6 210 aaPredicted RBP21.25■□□□□ 0.99
ERCC4-208ENST00000576348 ADAMTS7Q9UKP4 1686 aa21.24■□□□□ 0.99
ERCC4-208ENST00000576348 SLC39A6Q13433 755 aa21.24■□□□□ 0.99
ERCC4-208ENST00000576348 ZNF790Q6PG37 636 aa21.24■□□□□ 0.99
ERCC4-208ENST00000576348 C8orf58Q8NAV2 365 aa21.24■□□□□ 0.99
ERCC4-208ENST00000576348 POTEAQ6S8J7 498 aa21.23■□□□□ 0.99
ERCC4-208ENST00000576348 KCNQ3O43525 872 aa21.22■□□□□ 0.99
ERCC4-208ENST00000576348 EIF4A1P60842 406 aaKnown RBP21.22■□□□□ 0.99
ERCC4-208ENST00000576348 PIGBQ92521 554 aa21.22■□□□□ 0.99
ERCC4-208ENST00000576348 SCN11AQ9UI33 1791 aa21.21■□□□□ 0.99
ERCC4-208ENST00000576348 KRT24Q2M2I5 525 aa21.21■□□□□ 0.99
ERCC4-208ENST00000576348 TSPYL6Q8N831 410 aa21.21■□□□□ 0.99
ERCC4-208ENST00000576348 FMNL2Q96PY5 1086 aa21.21■□□□□ 0.99
ERCC4-208ENST00000576348 CHMP4AQ9BY43 222 aa21.21■□□□□ 0.99
ERCC4-208ENST00000576348 FAM182BQ5T319 152 aa21.2■□□□□ 0.98
ERCC4-208ENST00000576348 ZNF428Q96B54 188 aa21.2■□□□□ 0.98
ERCC4-208ENST00000576348 SUPT16HQ9Y5B9 1047 aaKnown RBP21.2■□□□□ 0.98
ERCC4-208ENST00000576348 SOS1Q07889 1333 aaPredicted RBP21.2■□□□□ 0.98
ERCC4-208ENST00000576348 CANXP27824 592 aaKnown RBP21.19■□□□□ 0.98
ERCC4-208ENST00000576348 SMC4Q9NTJ3 1288 aa21.19■□□□□ 0.98
ERCC4-208ENST00000576348 VAMP4O75379 141 aa21.18■□□□□ 0.98
ERCC4-208ENST00000576348 RARSP54136 660 aaKnown RBP21.18■□□□□ 0.98
ERCC4-208ENST00000576348 FAM196AQ6ZSG2 479 aa21.18■□□□□ 0.98
ERCC4-208ENST00000576348 BCL9O00512 1426 aa21.18■□□□□ 0.98
ERCC4-208ENST00000576348 NEFLP07196 543 aa21.17■□□□□ 0.98
ERCC4-208ENST00000576348 HOXB7P09629 217 aa21.17■□□□□ 0.98
ERCC4-208ENST00000576348 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.17■□□□□ 0.98
ERCC4-208ENST00000576348 ZNF496Q96IT1 587 aaPredicted RBP21.17■□□□□ 0.98
ERCC4-208ENST00000576348 PTCD1O75127 700 aaKnown RBP21.16■□□□□ 0.98
ERCC4-208ENST00000576348 ALDH1L2Q3SY69 923 aa21.16■□□□□ 0.98
ERCC4-208ENST00000576348 SMARCC1Q92922 1105 aaPredicted RBP21.16■□□□□ 0.98
ERCC4-208ENST00000576348 RBM42Q9BTD8 480 aaKnown RBP21.16■□□□□ 0.98
ERCC4-208ENST00000576348 BCL2L13Q9BXK5 485 aa21.16■□□□□ 0.98
ERCC4-208ENST00000576348 STK31Q9BXU1 1019 aa21.16■□□□□ 0.98
ERCC4-208ENST00000576348 ATG3Q9NT62 314 aa21.16■□□□□ 0.98
ERCC4-208ENST00000576348 ASAP1Q9ULH1 1129 aa21.16■□□□□ 0.98
ERCC4-208ENST00000576348 RGS12O14924 1447 aa21.15■□□□□ 0.98
ERCC4-208ENST00000576348 KCNQ2O43526 872 aa21.15■□□□□ 0.98
ERCC4-208ENST00000576348 SNRPA1P09661 255 aaKnown RBP21.15■□□□□ 0.98
ERCC4-208ENST00000576348 HDGFL1Q5TGJ6 251 aa21.15■□□□□ 0.98
ERCC4-208ENST00000576348 CCDC30Q5VVM6 783 aa21.15■□□□□ 0.98
ERCC4-208ENST00000576348 TOGARAM1Q9Y4F4 1720 aa21.15■□□□□ 0.98
ERCC4-208ENST00000576348 TCERG1O14776 1098 aaKnown RBP21.14■□□□□ 0.97
ERCC4-208ENST00000576348 GIGYF1O75420 1035 aaPredicted RBP21.14■□□□□ 0.97
ERCC4-208ENST00000576348 EIF2S2P20042 333 aaKnown RBP21.14■□□□□ 0.97
ERCC4-208ENST00000576348 SSH1Q8WYL5 1049 aa21.14■□□□□ 0.97
ERCC4-208ENST00000576348 DOT1LQ8TEK3 1739 aa21.13■□□□□ 0.97
ERCC4-208ENST00000576348 BCAR3O75815 825 aa21.13■□□□□ 0.97
ERCC4-208ENST00000576348 NECTIN2Q92692 538 aa21.13■□□□□ 0.97
ERCC4-208ENST00000576348 HEG1Q9ULI3 1381 aa21.12■□□□□ 0.97
ERCC4-208ENST00000576348 RRP1P56182 461 aaKnown RBP21.12■□□□□ 0.97
ERCC4-208ENST00000576348 FRAT1Q92837 279 aaPredicted RBP21.12■□□□□ 0.97
ERCC4-208ENST00000576348 SIPA1L3O60292 1781 aaPredicted RBP21.12■□□□□ 0.97
ERCC4-208ENST00000576348 KDM3BQ7LBC6 1761 aa21.12■□□□□ 0.97
ERCC4-208ENST00000576348 KIF16BQ96L93 1317 aa21.1■□□□□ 0.97
ERCC4-208ENST00000576348 TEX13AQ9BXU3 409 aaPredicted RBP21.1■□□□□ 0.97
ERCC4-208ENST00000576348 BCL11BQ9C0K0 894 aaPredicted RBP21.1■□□□□ 0.97
ERCC4-208ENST00000576348 IPO8O15397 1037 aaKnown RBP21.09■□□□□ 0.97
ERCC4-208ENST00000576348 PALLDQ8WX93 1383 aa21.09■□□□□ 0.97
ERCC4-208ENST00000576348 VIRMAQ69YN4 1812 aaKnown RBP21.08■□□□□ 0.97
ERCC4-208ENST00000576348 VSIG10Q8N0Z9 540 aa21.08■□□□□ 0.97
ERCC4-208ENST00000576348 MRPL50Q8N5N7 158 aaKnown RBP21.08■□□□□ 0.97
ERCC4-208ENST00000576348 PRAMEF22A3QJZ6 481 aa21.07■□□□□ 0.96
ERCC4-208ENST00000576348 TRIM37O94972 964 aa21.07■□□□□ 0.96
ERCC4-208ENST00000576348 SLC4A2P04920 1241 aa21.07■□□□□ 0.96
ERCC4-208ENST00000576348 KCPQ6ZWJ8 1503 aa21.07■□□□□ 0.96
ERCC4-208ENST00000576348 STARD3NLO95772 234 aa21.06■□□□□ 0.96
ERCC4-208ENST00000576348 ZKSCAN2Q63HK3 967 aa21.06■□□□□ 0.96
ERCC4-208ENST00000576348 DBF4Q9UBU7 674 aaPredicted RBP21.06■□□□□ 0.96
ERCC4-208ENST00000576348 PAPPAQ13219 1627 aa21.05■□□□□ 0.96
ERCC4-208ENST00000576348 LOC102724428A0A0B4J2F2 783 aa21.05■□□□□ 0.96
ERCC4-208ENST00000576348 PLIN1O60240 522 aa21.05■□□□□ 0.96
ERCC4-208ENST00000576348 MS4A1P11836 297 aa21.05■□□□□ 0.96
ERCC4-208ENST00000576348 SIK1P57059 783 aa21.05■□□□□ 0.96
ERCC4-208ENST00000576348 PTF1AQ7RTS3 328 aa21.05■□□□□ 0.96
ERCC4-208ENST00000576348 CHPF2Q9P2E5 772 aa21.05■□□□□ 0.96
ERCC4-208ENST00000576348 NOB1Q9ULX3 412 aaKnown RBP21.05■□□□□ 0.96
ERCC4-208ENST00000576348 ATP6V1AP38606 617 aa21.04■□□□□ 0.96
ERCC4-208ENST00000576348 DNAJC10Q8IXB1 793 aa21.04■□□□□ 0.96
ERCC4-208ENST00000576348 USP16Q9Y5T5 823 aa21.04■□□□□ 0.96
ERCC4-208ENST00000576348 ITGB4P16144 1822 aa21.04■□□□□ 0.96
ERCC4-208ENST00000576348 RNF123Q5XPI4 1314 aa21.04■□□□□ 0.96
ERCC4-208ENST00000576348 NHSQ6T4R5 1651 aa21.03■□□□□ 0.96
ERCC4-208ENST00000576348 BRPF1P55201 1214 aaPredicted RBP21.03■□□□□ 0.96
ERCC4-208ENST00000576348 FTSJ3Q8IY81 847 aaKnown RBP21.03■□□□□ 0.96
ERCC4-208ENST00000576348 API5Q9BZZ5 524 aaKnown RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms