RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 LTN1O94822 1766 aa12.5□□□□□ -0.41
VPS53-220ENST00000576149 FAM208AQ9UK61 1670 aaKnown RBP12.49□□□□□ -0.41
VPS53-220ENST00000576149 SMARCA5O60264 1052 aaPredicted RBP12.49□□□□□ -0.41
VPS53-220ENST00000576149 GNAI2P04899 355 aa12.49□□□□□ -0.41
VPS53-220ENST00000576149 DDIT3P35638 169 aa12.49□□□□□ -0.41
VPS53-220ENST00000576149 KCNH5Q8NCM2 988 aa12.49□□□□□ -0.41
VPS53-220ENST00000576149 FKBP5Q13451 457 aaPredicted RBP12.49□□□□□ -0.41
VPS53-220ENST00000576149 CEMIPQ8WUJ3 1361 aa12.49□□□□□ -0.41
VPS53-220ENST00000576149 NBPF6Q5VWK0 638 aa12.48□□□□□ -0.41
VPS53-220ENST00000576149 NBPF4Q96M43 638 aa12.48□□□□□ -0.41
VPS53-220ENST00000576149 APBB1O00213 710 aa12.48□□□□□ -0.41
VPS53-220ENST00000576149 GNAI3P08754 354 aa12.48□□□□□ -0.41
VPS53-220ENST00000576149 MCM4P33991 863 aa12.47□□□□□ -0.41
VPS53-220ENST00000576149 NECTIN2Q92692 538 aa12.47□□□□□ -0.41
VPS53-220ENST00000576149 ADAMTSL3P82987 1691 aa12.47□□□□□ -0.41
VPS53-220ENST00000576149 PHRF1Q9P1Y6 1649 aaKnown RBP12.47□□□□□ -0.41
VPS53-220ENST00000576149 SDSP20132 328 aa12.47□□□□□ -0.41
VPS53-220ENST00000576149 OSBPL3Q9H4L5 887 aa12.47□□□□□ -0.41
VPS53-220ENST00000576149 NPHP4O75161 1426 aaPredicted RBP12.46□□□□□ -0.41
VPS53-220ENST00000576149 HSP90AB1P08238 724 aaKnown RBP12.46□□□□□ -0.41
VPS53-220ENST00000576149 MED1Q15648 1581 aaPredicted RBP12.46□□□□□ -0.42
VPS53-220ENST00000576149 PXDNLA1KZ92 1463 aa12.46□□□□□ -0.42
VPS53-220ENST00000576149 CD2BP2O95400 341 aaKnown RBP12.46□□□□□ -0.42
VPS53-220ENST00000576149 BCL11BQ9C0K0 894 aaPredicted RBP12.46□□□□□ -0.42
VPS53-220ENST00000576149 ANO8Q9HCE9 1232 aaPredicted RBP12.46□□□□□ -0.42
VPS53-220ENST00000576149 CACNA1FO60840 1977 aa12.45□□□□□ -0.42
VPS53-220ENST00000576149 ATP8B2P98198 1209 aa12.45□□□□□ -0.42
VPS53-220ENST00000576149 HDGFL1Q5TGJ6 251 aa12.45□□□□□ -0.42
VPS53-220ENST00000576149 RBM42Q9BTD8 480 aaKnown RBP12.45□□□□□ -0.42
VPS53-220ENST00000576149 USP26Q9BXU7 913 aa12.45□□□□□ -0.42
VPS53-220ENST00000576149 CIZ1Q9ULV3 898 aaPredicted RBP12.45□□□□□ -0.42
VPS53-220ENST00000576149 K7ELQ4 463 aaPredicted RBP12.45□□□□□ -0.42
VPS53-220ENST00000576149 TAF7LQ5H9L4 462 aa12.45□□□□□ -0.42
VPS53-220ENST00000576149 CASC1Q6TDU7 716 aa12.45□□□□□ -0.42
VPS53-220ENST00000576149 ORAI2Q96SN7 254 aa12.45□□□□□ -0.42
VPS53-220ENST00000576149 SETD1BQ9UPS6 1966 aaKnown RBP12.44□□□□□ -0.42
VPS53-220ENST00000576149 GCP02774 474 aa12.44□□□□□ -0.42
VPS53-220ENST00000576149 PDE1AP54750 535 aa12.44□□□□□ -0.42
VPS53-220ENST00000576149 EIF4A1P60842 406 aaKnown RBP12.44□□□□□ -0.42
VPS53-220ENST00000576149 LGR6Q9HBX8 967 aa12.44□□□□□ -0.42
VPS53-220ENST00000576149 N4BP2Q86UW6 1770 aaPredicted RBP12.44□□□□□ -0.42
VPS53-220ENST00000576149 PNMA6EA0A0J9YXQ4 647 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 HOXB7P09629 217 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 ARHGEF25Q86VW2 580 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 USP44Q9H0E7 712 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 EXOC6BQ9Y2D4 811 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 SLIT3O75094 1523 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 SALL3Q9BXA9 1300 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 ZBTB7CA1YPR0 619 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 RABEP1Q15276 862 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 AKAP4Q5JQC9 854 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 LRRC59Q96AG4 307 aaKnown RBP12.43□□□□□ -0.42
VPS53-220ENST00000576149 LRRCC1Q9C099 1032 aa12.43□□□□□ -0.42
VPS53-220ENST00000576149 PHAXQ9H814 394 aaKnown RBP12.43□□□□□ -0.42
VPS53-220ENST00000576149 NCAPD2Q15021 1401 aa12.42□□□□□ -0.42
VPS53-220ENST00000576149 BRD2P25440 801 aaKnown RBP12.42□□□□□ -0.42
VPS53-220ENST00000576149 AMOTQ4VCS5 1084 aa12.42□□□□□ -0.42
VPS53-220ENST00000576149 PLEKHO1Q53GL0 409 aaPredicted RBP12.42□□□□□ -0.42
VPS53-220ENST00000576149 LRRFIP2Q9Y608 721 aaKnown RBP12.42□□□□□ -0.42
VPS53-220ENST00000576149 IBTKQ9P2D0 1353 aaPredicted RBP12.42□□□□□ -0.42
VPS53-220ENST00000576149 LMO7Q8WWI1 1683 aa12.41□□□□□ -0.42
VPS53-220ENST00000576149 KDM3BQ7LBC6 1761 aa12.41□□□□□ -0.42
VPS53-220ENST00000576149 ZNF530Q6P9A1 599 aaPredicted RBP12.41□□□□□ -0.42
VPS53-220ENST00000576149 UBTFL1P0CB47 393 aaPredicted RBP12.41□□□□□ -0.42
VPS53-220ENST00000576149 XPCQ01831 940 aaPredicted RBP12.41□□□□□ -0.42
VPS53-220ENST00000576149 RAB3GAP1Q15042 981 aa12.41□□□□□ -0.42
VPS53-220ENST00000576149 IL27Q8NEV9 243 aa12.41□□□□□ -0.42
VPS53-220ENST00000576149 CNKSR2Q8WXI2 1034 aa12.41□□□□□ -0.42
VPS53-220ENST00000576149 RGPD2P0DJD1 1756 aa12.41□□□□□ -0.42
VPS53-220ENST00000576149 DDX11L8A8MPP1 907 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 REC8O95072 547 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 EIF2S2P20042 333 aaKnown RBP12.4□□□□□ -0.42
VPS53-220ENST00000576149 TEFQ10587 303 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 BRPF3Q9ULD4 1205 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 BTBD11A6QL63 1104 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 ERC2O15083 957 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 KCNQ3O43525 872 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 HSP90AA1P07900 732 aaKnown RBP12.4□□□□□ -0.42
VPS53-220ENST00000576149 TNPO1Q92973 898 aaKnown RBP12.4□□□□□ -0.42
VPS53-220ENST00000576149 SRCIN1Q9C0H9 1055 aa12.4□□□□□ -0.42
VPS53-220ENST00000576149 TRAK2O60296 914 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 MX1P20591 662 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 MPRIPQ6WCQ1 1025 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 SSH3Q8TE77 659 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 CHPF2Q9P2E5 772 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 RNMTO43148 476 aaKnown RBP12.39□□□□□ -0.43
VPS53-220ENST00000576149 ANKRD24Q8TF21 1146 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 STAP2Q9UGK3 403 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 OVOS2A0A0G2JMS6 1433 aa12.39□□□□□ -0.43
VPS53-220ENST00000576149 KRT28Q7Z3Y7 464 aa12.38□□□□□ -0.43
VPS53-220ENST00000576149 TRPM3Q9HCF6 1732 aaPredicted RBP12.38□□□□□ -0.43
VPS53-220ENST00000576149 C1orf141Q5JVX7 400 aa12.38□□□□□ -0.43
VPS53-220ENST00000576149 LMOD2Q6P5Q4 547 aa12.38□□□□□ -0.43
VPS53-220ENST00000576149 PPP4R3CPQ6ZMV5 832 aa12.38□□□□□ -0.43
VPS53-220ENST00000576149 PROSER2Q86WR7 435 aaPredicted RBP12.38□□□□□ -0.43
VPS53-220ENST00000576149 FOXD4L1Q9NU39 408 aa12.38□□□□□ -0.43
VPS53-220ENST00000576149 PXDNQ92626 1479 aa12.38□□□□□ -0.43
VPS53-220ENST00000576149 POLA2Q14181 598 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 BEND3Q5T5X7 828 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 TSHZ3Q63HK5 1081 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms