RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 TMOD3Q9NYL9 352 aa11.26□□□□□ -0.61
NUP88-211ENST00000575976 CEMIPQ8WUJ3 1361 aa11.26□□□□□ -0.61
NUP88-211ENST00000575976 DOT1LQ8TEK3 1739 aa11.26□□□□□ -0.61
NUP88-211ENST00000575976 ADAMTS7Q9UKP4 1686 aa11.25□□□□□ -0.61
NUP88-211ENST00000575976 TEFQ10587 303 aa11.25□□□□□ -0.61
NUP88-211ENST00000575976 SBF2Q86WG5 1849 aa11.25□□□□□ -0.61
NUP88-211ENST00000575976 DLG5Q8TDM6 1919 aa11.25□□□□□ -0.61
NUP88-211ENST00000575976 NHSQ6T4R5 1651 aa11.24□□□□□ -0.61
NUP88-211ENST00000575976 SCN11AQ9UI33 1791 aa11.24□□□□□ -0.61
NUP88-211ENST00000575976 APBA3O96018 575 aa11.24□□□□□ -0.61
NUP88-211ENST00000575976 NCBP3Q53F19 620 aaKnown RBP11.24□□□□□ -0.61
NUP88-211ENST00000575976 TAF7Q15545 349 aaPredicted RBP11.23□□□□□ -0.61
NUP88-211ENST00000575976 CCDC27Q2M243 656 aa11.23□□□□□ -0.61
NUP88-211ENST00000575976 ATG3Q9NT62 314 aa11.23□□□□□ -0.61
NUP88-211ENST00000575976 ASAP1Q9ULH1 1129 aa11.23□□□□□ -0.61
NUP88-211ENST00000575976 MRC1P22897 1456 aa11.23□□□□□ -0.61
NUP88-211ENST00000575976 ITGB4P16144 1822 aa11.22□□□□□ -0.61
NUP88-211ENST00000575976 SLC39A6Q13433 755 aa11.22□□□□□ -0.61
NUP88-211ENST00000575976 WWC1Q8IX03 1113 aa11.22□□□□□ -0.61
NUP88-211ENST00000575976 KAT6BQ8WYB5 2073 aa11.22□□□□□ -0.61
NUP88-211ENST00000575976 PPP1R1BQ9UD71 204 aaPredicted RBP11.22□□□□□ -0.61
NUP88-211ENST00000575976 BTBD11A6QL63 1104 aa11.21□□□□□ -0.61
NUP88-211ENST00000575976 PLSCR1O15162 318 aa11.21□□□□□ -0.61
NUP88-211ENST00000575976 KCNQ3O43525 872 aa11.21□□□□□ -0.61
NUP88-211ENST00000575976 NBPF14Q5TI25 921 aa11.21□□□□□ -0.61
NUP88-211ENST00000575976 NGEFQ8N5V2 710 aa11.21□□□□□ -0.61
NUP88-211ENST00000575976 MIS18AQ9NYP9 233 aa11.21□□□□□ -0.61
NUP88-211ENST00000575976 VIRMAQ69YN4 1812 aaKnown RBP11.21□□□□□ -0.62
NUP88-211ENST00000575976 TNS1Q9HBL0 1735 aaKnown RBP11.21□□□□□ -0.62
NUP88-211ENST00000575976 HNRNPUQ00839 825 aaKnown RBP eCLIP11.2□□□□□ -0.62
NUP88-211ENST00000575976 EZH2Q15910 746 aaKnown RBP11.2□□□□□ -0.62
NUP88-211ENST00000575976 SMARCC1Q92922 1105 aaPredicted RBP11.2□□□□□ -0.62
NUP88-211ENST00000575976 LAS1LQ9Y4W2 734 aaKnown RBP11.2□□□□□ -0.62
NUP88-211ENST00000575976 BTAF1O14981 1849 aa11.2□□□□□ -0.62
NUP88-211ENST00000575976 PALLDQ8WX93 1383 aa11.19□□□□□ -0.62
NUP88-211ENST00000575976 CALD1Q05682 793 aaKnown RBP11.19□□□□□ -0.62
NUP88-211ENST00000575976 ZNF790Q6PG37 636 aa11.19□□□□□ -0.62
NUP88-211ENST00000575976 WDR63Q8IWG1 891 aa11.19□□□□□ -0.62
NUP88-211ENST00000575976 PROM2Q8N271 834 aa11.19□□□□□ -0.62
NUP88-211ENST00000575976 CAMKK2Q96RR4 588 aa11.19□□□□□ -0.62
NUP88-211ENST00000575976 SIPA1L3O60292 1781 aaPredicted RBP11.18□□□□□ -0.62
NUP88-211ENST00000575976 ZNF521Q96K83 1311 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 CHL1O00533 1208 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 PTCD1O75127 700 aaKnown RBP11.18□□□□□ -0.62
NUP88-211ENST00000575976 ZNF853P0CG23 659 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 KCNQ4P56696 695 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 TXNRD1Q16881 649 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 TTC5Q8N0Z6 440 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 PIAS4Q8N2W9 510 aaPredicted RBP11.18□□□□□ -0.62
NUP88-211ENST00000575976 CFAP44Q96MT7 982 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 RBM42Q9BTD8 480 aaKnown RBP11.18□□□□□ -0.62
NUP88-211ENST00000575976 SPON1Q9HCB6 807 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 TSPYL4Q9UJ04 414 aa11.18□□□□□ -0.62
NUP88-211ENST00000575976 LOC102724428A0A0B4J2F2 783 aa11.17□□□□□ -0.62
NUP88-211ENST00000575976 SIK1P57059 783 aa11.17□□□□□ -0.62
NUP88-211ENST00000575976 GNAI1P63096 354 aa11.17□□□□□ -0.62
NUP88-211ENST00000575976 ZNF496Q96IT1 587 aaPredicted RBP11.17□□□□□ -0.62
NUP88-211ENST00000575976 SLC4A9Q96Q91 983 aa11.17□□□□□ -0.62
NUP88-211ENST00000575976 SPINK5Q9NQ38 1064 aaPredicted RBP11.17□□□□□ -0.62
NUP88-211ENST00000575976 IFT57Q9NWB7 429 aa11.17□□□□□ -0.62
NUP88-211ENST00000575976 BABAM1Q9NWV8 329 aa11.17□□□□□ -0.62
NUP88-211ENST00000575976 IL16Q14005 1332 aa11.16□□□□□ -0.62
NUP88-211ENST00000575976 EIF4A1P60842 406 aaKnown RBP11.16□□□□□ -0.62
NUP88-211ENST00000575976 ZNF784Q8NCA9 323 aaPredicted RBP11.16□□□□□ -0.62
NUP88-211ENST00000575976 MBIPQ9NS73 344 aa11.16□□□□□ -0.62
NUP88-211ENST00000575976 LRRC4BQ9NT99 713 aa11.16□□□□□ -0.62
NUP88-211ENST00000575976 CCNL1Q9UK58 526 aaPredicted RBP11.16□□□□□ -0.62
NUP88-211ENST00000575976 PAPPAQ13219 1627 aa11.16□□□□□ -0.62
NUP88-211ENST00000575976 KCPQ6ZWJ8 1503 aa11.15□□□□□ -0.62
NUP88-211ENST00000575976 ATP6V1AP38606 617 aa11.15□□□□□ -0.62
NUP88-211ENST00000575976 GOLGA2Q08379 1002 aa11.15□□□□□ -0.62
NUP88-211ENST00000575976 ITPK1Q13572 414 aa11.15□□□□□ -0.62
NUP88-211ENST00000575976 SLC27A3Q5K4L6 730 aa11.15□□□□□ -0.62
NUP88-211ENST00000575976 TSR2Q969E8 191 aaKnown RBP11.15□□□□□ -0.62
NUP88-211ENST00000575976 FMNL2Q96PY5 1086 aa11.15□□□□□ -0.62
NUP88-211ENST00000575976 HEG1Q9ULI3 1381 aa11.15□□□□□ -0.63
NUP88-211ENST00000575976 C1QTNF8P60827 252 aa11.14□□□□□ -0.63
NUP88-211ENST00000575976 KRT24Q2M2I5 525 aa11.14□□□□□ -0.63
NUP88-211ENST00000575976 DNAJC10Q8IXB1 793 aa11.14□□□□□ -0.63
NUP88-211ENST00000575976 CDCA7LQ96GN5 454 aa11.14□□□□□ -0.63
NUP88-211ENST00000575976 LY75O60449 1722 aa11.14□□□□□ -0.63
NUP88-211ENST00000575976 KDM3BQ7LBC6 1761 aa11.13□□□□□ -0.63
NUP88-211ENST00000575976 PRAMEF22A3QJZ6 481 aa11.13□□□□□ -0.63
NUP88-211ENST00000575976 SLFN5Q08AF3 891 aa11.13□□□□□ -0.63
NUP88-211ENST00000575976 VSIG10Q8N0Z9 540 aa11.13□□□□□ -0.63
NUP88-211ENST00000575976 LINC00116Q8NCU8 138 aa11.13□□□□□ -0.63
NUP88-211ENST00000575976 FANCIQ9NVI1 1328 aa11.12□□□□□ -0.63
NUP88-211ENST00000575976 E9PSI1 815 aa11.12□□□□□ -0.63
NUP88-211ENST00000575976 GIGYF1O75420 1035 aaPredicted RBP11.12□□□□□ -0.63
NUP88-211ENST00000575976 SNRPA1P09661 255 aaKnown RBP11.12□□□□□ -0.63
NUP88-211ENST00000575976 YTHDC1Q96MU7 727 aaKnown RBP11.12□□□□□ -0.63
NUP88-211ENST00000575976 USP16Q9Y5T5 823 aa11.12□□□□□ -0.63
NUP88-211ENST00000575976 RGPD3A6NKT7 1758 aaPredicted RBP11.12□□□□□ -0.63
NUP88-211ENST00000575976 RGPD4Q7Z3J3 1758 aa11.12□□□□□ -0.63
NUP88-211ENST00000575976 UBR2Q8IWV8 1755 aa11.12□□□□□ -0.63
NUP88-211ENST00000575976 ZBED9Q6R2W3 1325 aa11.11□□□□□ -0.63
NUP88-211ENST00000575976 ELL2O00472 640 aaPredicted RBP11.11□□□□□ -0.63
NUP88-211ENST00000575976 CYP19A1P11511 503 aaPredicted RBP11.11□□□□□ -0.63
NUP88-211ENST00000575976 C8orf58Q8NAV2 365 aa11.11□□□□□ -0.63
NUP88-211ENST00000575976 TEX13AQ9BXU3 409 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms