RNA–Protein interactions for RNA: ENST00000575711.1

RPAIN-217, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-217ENST00000575711 PLSCR1O15162 318 aa18.35■□□□□ 0.53
RPAIN-217ENST00000575711 SMARCC1Q92922 1105 aaPredicted RBP18.35■□□□□ 0.53
RPAIN-217ENST00000575711 TRIM35Q9UPQ4 493 aa18.35■□□□□ 0.53
RPAIN-217ENST00000575711 KAT6BQ8WYB5 2073 aa18.35■□□□□ 0.53
RPAIN-217ENST00000575711 DLG5Q8TDM6 1919 aa18.35■□□□□ 0.53
RPAIN-217ENST00000575711 BTAF1O14981 1849 aa18.35■□□□□ 0.53
RPAIN-217ENST00000575711 ITGB4P16144 1822 aa18.35■□□□□ 0.53
RPAIN-217ENST00000575711 DEFB132Q7Z7B7 95 aa18.34■□□□□ 0.53
RPAIN-217ENST00000575711 THUMPD2Q9BTF0 503 aaKnown RBP18.34■□□□□ 0.53
RPAIN-217ENST00000575711 SENP3-EIF4A1A0A087X0R7 540 aa18.33■□□□□ 0.52
RPAIN-217ENST00000575711 EN1Q05925 392 aaPredicted RBP18.33■□□□□ 0.52
RPAIN-217ENST00000575711 NCBP3Q53F19 620 aaKnown RBP18.33■□□□□ 0.52
RPAIN-217ENST00000575711 ASAP1Q9ULH1 1129 aa18.33■□□□□ 0.52
RPAIN-217ENST00000575711 PALLDQ8WX93 1383 aa18.32■□□□□ 0.52
RPAIN-217ENST00000575711 CCDC27Q2M243 656 aa18.32■□□□□ 0.52
RPAIN-217ENST00000575711 NGEFQ8N5V2 710 aa18.32■□□□□ 0.52
RPAIN-217ENST00000575711 ATG3Q9NT62 314 aa18.32■□□□□ 0.52
RPAIN-217ENST00000575711 VIRMAQ69YN4 1812 aaKnown RBP18.31■□□□□ 0.52
RPAIN-217ENST00000575711 BTBD11A6QL63 1104 aa18.31■□□□□ 0.52
RPAIN-217ENST00000575711 TAF7Q15545 349 aaPredicted RBP18.31■□□□□ 0.52
RPAIN-217ENST00000575711 SALL2Q9Y467 1007 aaPredicted RBP18.31■□□□□ 0.52
RPAIN-217ENST00000575711 CALD1Q05682 793 aaKnown RBP18.3■□□□□ 0.52
RPAIN-217ENST00000575711 EZH2Q15910 746 aaKnown RBP18.3■□□□□ 0.52
RPAIN-217ENST00000575711 CAMKK2Q96RR4 588 aa18.3■□□□□ 0.52
RPAIN-217ENST00000575711 SLC39A6Q13433 755 aa18.29■□□□□ 0.52
RPAIN-217ENST00000575711 TTC5Q8N0Z6 440 aa18.29■□□□□ 0.52
RPAIN-217ENST00000575711 RGPD3A6NKT7 1758 aaPredicted RBP18.28■□□□□ 0.52
RPAIN-217ENST00000575711 RGPD4Q7Z3J3 1758 aa18.28■□□□□ 0.52
RPAIN-217ENST00000575711 TXNRD1Q16881 649 aa18.28■□□□□ 0.52
RPAIN-217ENST00000575711 WWC1Q8IX03 1113 aa18.28■□□□□ 0.52
RPAIN-217ENST00000575711 SIPA1L3O60292 1781 aaPredicted RBP18.27■□□□□ 0.52
RPAIN-217ENST00000575711 LOC102724428A0A0B4J2F2 783 aa18.27■□□□□ 0.52
RPAIN-217ENST00000575711 SIK1P57059 783 aa18.27■□□□□ 0.52
RPAIN-217ENST00000575711 SLC27A3Q5K4L6 730 aa18.27■□□□□ 0.52
RPAIN-217ENST00000575711 ZNF790Q6PG37 636 aa18.27■□□□□ 0.52
RPAIN-217ENST00000575711 RBM42Q9BTD8 480 aaKnown RBP18.27■□□□□ 0.52
RPAIN-217ENST00000575711 CCNL1Q9UK58 526 aaPredicted RBP18.27■□□□□ 0.52
RPAIN-217ENST00000575711 PTCD1O75127 700 aaKnown RBP18.26■□□□□ 0.51
RPAIN-217ENST00000575711 BABAM1Q9NWV8 329 aa18.26■□□□□ 0.51
RPAIN-217ENST00000575711 MIS18AQ9NYP9 233 aa18.26■□□□□ 0.51
RPAIN-217ENST00000575711 TSPYL4Q9UJ04 414 aa18.26■□□□□ 0.51
RPAIN-217ENST00000575711 LAS1LQ9Y4W2 734 aaKnown RBP18.26■□□□□ 0.51
RPAIN-217ENST00000575711 PAPPAQ13219 1627 aa18.26■□□□□ 0.51
RPAIN-217ENST00000575711 PROM2Q8N271 834 aa18.25■□□□□ 0.51
RPAIN-217ENST00000575711 HMGB2P26583 209 aaKnown RBP18.24■□□□□ 0.51
RPAIN-217ENST00000575711 ATP6V1AP38606 617 aa18.24■□□□□ 0.51
RPAIN-217ENST00000575711 LY75O60449 1722 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 KCNQ3O43525 872 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 GNAI1P63096 354 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 WDR63Q8IWG1 891 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 CFAP44Q96MT7 982 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 FMNL2Q96PY5 1086 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 IFT57Q9NWB7 429 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 KCPQ6ZWJ8 1503 aa18.23■□□□□ 0.51
RPAIN-217ENST00000575711 CHL1O00533 1208 aa18.22■□□□□ 0.51
RPAIN-217ENST00000575711 KCNQ4P56696 695 aa18.22■□□□□ 0.51
RPAIN-217ENST00000575711 ZNF496Q96IT1 587 aaPredicted RBP18.22■□□□□ 0.51
RPAIN-217ENST00000575711 LRRC4BQ9NT99 713 aa18.22■□□□□ 0.51
RPAIN-217ENST00000575711 IL16Q14005 1332 aa18.22■□□□□ 0.51
RPAIN-217ENST00000575711 ZNF853P0CG23 659 aa18.21■□□□□ 0.51
RPAIN-217ENST00000575711 HNRNPUQ00839 825 aaKnown RBP eCLIP18.21■□□□□ 0.51
RPAIN-217ENST00000575711 VSIG10Q8N0Z9 540 aa18.21■□□□□ 0.51
RPAIN-217ENST00000575711 RREB1Q92766 1687 aa18.21■□□□□ 0.51
RPAIN-217ENST00000575711 HEG1Q9ULI3 1381 aa18.2■□□□□ 0.5
RPAIN-217ENST00000575711 SLC4A9Q96Q91 983 aa18.2■□□□□ 0.5
RPAIN-217ENST00000575711 ZNF521Q96K83 1311 aa18.2■□□□□ 0.5
RPAIN-217ENST00000575711 KDM3BQ7LBC6 1761 aa18.19■□□□□ 0.5
RPAIN-217ENST00000575711 UBR2Q8IWV8 1755 aa18.19■□□□□ 0.5
RPAIN-217ENST00000575711 EIF4A1P60842 406 aaKnown RBP18.19■□□□□ 0.5
RPAIN-217ENST00000575711 ITPK1Q13572 414 aa18.19■□□□□ 0.5
RPAIN-217ENST00000575711 MBIPQ9NS73 344 aa18.19■□□□□ 0.5
RPAIN-217ENST00000575711 NBPF14Q5TI25 921 aa18.18■□□□□ 0.5
RPAIN-217ENST00000575711 ZNF831Q5JPB2 1677 aa18.18■□□□□ 0.5
RPAIN-217ENST00000575711 NUP188Q5SRE5 1749 aa18.18■□□□□ 0.5
RPAIN-217ENST00000575711 SNRPA1P09661 255 aaKnown RBP18.17■□□□□ 0.5
RPAIN-217ENST00000575711 DNAJC10Q8IXB1 793 aa18.17■□□□□ 0.5
RPAIN-217ENST00000575711 LINC00116Q8NCU8 138 aa18.17■□□□□ 0.5
RPAIN-217ENST00000575711 TEX13AQ9BXU3 409 aaPredicted RBP18.17■□□□□ 0.5
RPAIN-217ENST00000575711 GOLGA2Q08379 1002 aa18.16■□□□□ 0.5
RPAIN-217ENST00000575711 STK32BQ9NY57 414 aa18.16■□□□□ 0.5
RPAIN-217ENST00000575711 STARD3NLO95772 234 aa18.15■□□□□ 0.5
RPAIN-217ENST00000575711 MYH16Q9H6N6 1097 aa18.15■□□□□ 0.5
RPAIN-217ENST00000575711 CICQ96RK0 1608 aaPredicted RBP18.15■□□□□ 0.5
RPAIN-217ENST00000575711 C5P01031 1676 aa18.15■□□□□ 0.5
RPAIN-217ENST00000575711 GIGYF1O75420 1035 aaPredicted RBP18.14■□□□□ 0.49
RPAIN-217ENST00000575711 TSR2Q969E8 191 aaKnown RBP18.14■□□□□ 0.49
RPAIN-217ENST00000575711 AK7Q96M32 723 aa18.14■□□□□ 0.49
RPAIN-217ENST00000575711 ANO8Q9HCE9 1232 aaPredicted RBP18.14■□□□□ 0.49
RPAIN-217ENST00000575711 TJP1Q07157 1748 aa18.14■□□□□ 0.49
RPAIN-217ENST00000575711 E9PSI1 815 aa18.13■□□□□ 0.49
RPAIN-217ENST00000575711 CYP19A1P11511 503 aaPredicted RBP18.13■□□□□ 0.49
RPAIN-217ENST00000575711 SLC15A2Q16348 729 aa18.13■□□□□ 0.49
RPAIN-217ENST00000575711 ZNF827Q17R98 1081 aa18.13■□□□□ 0.49
RPAIN-217ENST00000575711 AKT1S1Q96B36 256 aa18.13■□□□□ 0.49
RPAIN-217ENST00000575711 SPINK5Q9NQ38 1064 aaPredicted RBP18.13■□□□□ 0.49
RPAIN-217ENST00000575711 CNTNAP4Q9C0A0 1308 aa18.13■□□□□ 0.49
RPAIN-217ENST00000575711 FANCIQ9NVI1 1328 aa18.13■□□□□ 0.49
RPAIN-217ENST00000575711 C4BP0C0L5 1744 aa18.12■□□□□ 0.49
RPAIN-217ENST00000575711 PRAMEF22A3QJZ6 481 aa18.12■□□□□ 0.49
RPAIN-217ENST00000575711 CRKLP46109 303 aaKnown RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms