RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 SPON1Q9HCB6 807 aa18.07■□□□□ 0.48
CIITA-210ENST00000575513 TFCP2L1Q9NZI6 479 aa18.07■□□□□ 0.48
CIITA-210ENST00000575513 HTATSF1O43719 755 aaKnown RBP18.06■□□□□ 0.48
CIITA-210ENST00000575513 NEFMP07197 916 aa18.06■□□□□ 0.48
CIITA-210ENST00000575513 ATP6V1AP38606 617 aa18.06■□□□□ 0.48
CIITA-210ENST00000575513 SLC16A10Q8TF71 515 aa18.06■□□□□ 0.48
CIITA-210ENST00000575513 FLAD1Q8NFF5 587 aa18.05■□□□□ 0.48
CIITA-210ENST00000575513 IL17REQ8NFR9 667 aa18.05■□□□□ 0.48
CIITA-210ENST00000575513 PLEKHF1Q96S99 279 aa18.05■□□□□ 0.48
CIITA-210ENST00000575513 LRP5O75197 1615 aa18.05■□□□□ 0.48
CIITA-210ENST00000575513 MRC1P22897 1456 aa18.04■□□□□ 0.48
CIITA-210ENST00000575513 PDGFDQ9GZP0 370 aaPredicted RBP18.04■□□□□ 0.48
CIITA-210ENST00000575513 MTFR1LQ9H019 292 aa18.04■□□□□ 0.48
CIITA-210ENST00000575513 PNPLA7Q6ZV29 1317 aa18.03■□□□□ 0.48
CIITA-210ENST00000575513 ADAMTS7Q9UKP4 1686 aa18.03■□□□□ 0.48
CIITA-210ENST00000575513 CEMIPQ8WUJ3 1361 aa18.03■□□□□ 0.48
CIITA-210ENST00000575513 SCN11AQ9UI33 1791 aa18.02■□□□□ 0.48
CIITA-210ENST00000575513 TEFQ10587 303 aa18.02■□□□□ 0.48
CIITA-210ENST00000575513 ITPK1Q13572 414 aa18.02■□□□□ 0.48
CIITA-210ENST00000575513 RTF1Q92541 710 aaKnown RBP18.02■□□□□ 0.48
CIITA-210ENST00000575513 SLC4A9Q96Q91 983 aa18.02■□□□□ 0.48
CIITA-210ENST00000575513 RBM42Q9BTD8 480 aaKnown RBP18.02■□□□□ 0.48
CIITA-210ENST00000575513 RC3H1Q5TC82 1133 aaKnown RBP18.01■□□□□ 0.47
CIITA-210ENST00000575513 LINC00116Q8NCU8 138 aa18.01■□□□□ 0.47
CIITA-210ENST00000575513 AK7Q96M32 723 aa18.01■□□□□ 0.47
CIITA-210ENST00000575513 CASZ1Q86V15 1759 aa18.01■□□□□ 0.47
CIITA-210ENST00000575513 ZNF831Q5JPB2 1677 aa18■□□□□ 0.47
CIITA-210ENST00000575513 ZBTB7AO95365 584 aa18■□□□□ 0.47
CIITA-210ENST00000575513 PTCD1O75127 700 aaKnown RBP17.99■□□□□ 0.47
CIITA-210ENST00000575513 SSFA2P28290 1259 aa17.99■□□□□ 0.47
CIITA-210ENST00000575513 VSIG10Q8N0Z9 540 aa17.99■□□□□ 0.47
CIITA-210ENST00000575513 QSER1Q2KHR3 1735 aa17.98■□□□□ 0.47
CIITA-210ENST00000575513 PTGER2P43116 358 aa17.98■□□□□ 0.47
CIITA-210ENST00000575513 NFE2L2Q16236 605 aa17.98■□□□□ 0.47
CIITA-210ENST00000575513 COL23A1Q86Y22 540 aaPredicted RBP17.98■□□□□ 0.47
CIITA-210ENST00000575513 C5P01031 1676 aa17.98■□□□□ 0.47
CIITA-210ENST00000575513 CNTNAP4Q9C0A0 1308 aa17.98■□□□□ 0.47
CIITA-210ENST00000575513 MAPK8IP3Q9UPT6 1336 aa17.98■□□□□ 0.47
CIITA-210ENST00000575513 WDR43Q15061 677 aaKnown RBP eCLIP17.97■□□□□ 0.47
CIITA-210ENST00000575513 ZNF790Q6PG37 636 aa17.97■□□□□ 0.47
CIITA-210ENST00000575513 SGIP1Q9BQI5 828 aa17.97■□□□□ 0.47
CIITA-210ENST00000575513 ATF5Q9Y2D1 282 aaPredicted RBP17.97■□□□□ 0.47
CIITA-210ENST00000575513 TAF1LQ8IZX4 1826 aa17.96■□□□□ 0.47
CIITA-210ENST00000575513 C4BP0C0L5 1744 aa17.96■□□□□ 0.47
CIITA-210ENST00000575513 SLC39A6Q13433 755 aa17.96■□□□□ 0.47
CIITA-210ENST00000575513 TTC5Q8N0Z6 440 aa17.96■□□□□ 0.47
CIITA-210ENST00000575513 ANP32CO43423 234 aa17.95■□□□□ 0.46
CIITA-210ENST00000575513 ADRA2BP18089 450 aa17.95■□□□□ 0.46
CIITA-210ENST00000575513 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.94■□□□□ 0.46
CIITA-210ENST00000575513 BTBD11A6QL63 1104 aa17.94■□□□□ 0.46
CIITA-210ENST00000575513 GNPATO15228 680 aa17.94■□□□□ 0.46
CIITA-210ENST00000575513 RPS6KA4O75676 772 aa17.94■□□□□ 0.46
CIITA-210ENST00000575513 MCM10Q7L590 875 aa17.94■□□□□ 0.46
CIITA-210ENST00000575513 TEX13AQ9BXU3 409 aaPredicted RBP17.94■□□□□ 0.46
CIITA-210ENST00000575513 PPP1R1BQ9UD71 204 aaPredicted RBP17.94■□□□□ 0.46
CIITA-210ENST00000575513 ADAMTS8Q9UP79 889 aa17.94■□□□□ 0.46
CIITA-210ENST00000575513 RTCBQ9Y3I0 505 aaKnown RBP17.94■□□□□ 0.46
CIITA-210ENST00000575513 MSH5O43196 834 aa17.93■□□□□ 0.46
CIITA-210ENST00000575513 TAF7Q15545 349 aaPredicted RBP17.93■□□□□ 0.46
CIITA-210ENST00000575513 TRAPPC3LQ5T215 181 aa17.93■□□□□ 0.46
CIITA-210ENST00000575513 RUNDC1Q96C34 613 aa17.93■□□□□ 0.46
CIITA-210ENST00000575513 POLD1P28340 1107 aa17.92■□□□□ 0.46
CIITA-210ENST00000575513 CRKLP46109 303 aaKnown RBP17.92■□□□□ 0.46
CIITA-210ENST00000575513 AMIGO3Q86WK7 504 aa17.92■□□□□ 0.46
CIITA-210ENST00000575513 FMNL2Q96PY5 1086 aa17.92■□□□□ 0.46
CIITA-210ENST00000575513 CICQ96RK0 1608 aaPredicted RBP17.91■□□□□ 0.46
CIITA-210ENST00000575513 CYP19A1P11511 503 aaPredicted RBP17.91■□□□□ 0.46
CIITA-210ENST00000575513 TMPOP42166 694 aaKnown RBP17.91■□□□□ 0.46
CIITA-210ENST00000575513 LMOD3Q0VAK6 560 aa17.91■□□□□ 0.46
CIITA-210ENST00000575513 DCTN1Q14203 1278 aa17.91■□□□□ 0.46
CIITA-210ENST00000575513 DNAJC10Q8IXB1 793 aa17.91■□□□□ 0.46
CIITA-210ENST00000575513 PNISRQ8TF01 805 aaKnown RBP17.91■□□□□ 0.46
CIITA-210ENST00000575513 ZNF496Q96IT1 587 aaPredicted RBP17.91■□□□□ 0.46
CIITA-210ENST00000575513 KCPQ6ZWJ8 1503 aa17.91■□□□□ 0.46
CIITA-210ENST00000575513 STARD3NLO95772 234 aa17.9■□□□□ 0.46
CIITA-210ENST00000575513 RIPK4P57078 832 aa17.9■□□□□ 0.46
CIITA-210ENST00000575513 INTS5Q6P9B9 1019 aaKnown RBP17.9■□□□□ 0.46
CIITA-210ENST00000575513 ARXQ96QS3 562 aa17.9■□□□□ 0.46
CIITA-210ENST00000575513 HEG1Q9ULI3 1381 aa17.9■□□□□ 0.46
CIITA-210ENST00000575513 PHF14O94880 888 aa17.89■□□□□ 0.45
CIITA-210ENST00000575513 CCDC87Q9NVE4 849 aa17.89■□□□□ 0.45
CIITA-210ENST00000575513 VIRMAQ69YN4 1812 aaKnown RBP17.88■□□□□ 0.45
CIITA-210ENST00000575513 TUBGCP6Q96RT7 1819 aa17.88■□□□□ 0.45
CIITA-210ENST00000575513 ARHGEF1Q92888 912 aaKnown RBP17.88■□□□□ 0.45
CIITA-210ENST00000575513 BABAM1Q9NWV8 329 aa17.88■□□□□ 0.45
CIITA-210ENST00000575513 SIPA1L3O60292 1781 aaPredicted RBP17.88■□□□□ 0.45
CIITA-210ENST00000575513 UBR3Q6ZT12 1888 aa17.88■□□□□ 0.45
CIITA-210ENST00000575513 COL5A3P25940 1745 aaPredicted RBP17.87■□□□□ 0.45
CIITA-210ENST00000575513 KCNQ3O43525 872 aa17.86■□□□□ 0.45
CIITA-210ENST00000575513 RFC4P35249 363 aa17.86■□□□□ 0.45
CIITA-210ENST00000575513 SMIM5Q71RC9 77 aa17.86■□□□□ 0.45
CIITA-210ENST00000575513 CCDC146Q8IYE0 955 aa17.86■□□□□ 0.45
CIITA-210ENST00000575513 NLGN1Q8N2Q7 840 aa17.86■□□□□ 0.45
CIITA-210ENST00000575513 COL24A1Q17RW2 1714 aa17.86■□□□□ 0.45
CIITA-210ENST00000575513 UBR2Q8IWV8 1755 aa17.86■□□□□ 0.45
CIITA-210ENST00000575513 SNRPA1P09661 255 aaKnown RBP17.85■□□□□ 0.45
CIITA-210ENST00000575513 TJP1Q07157 1748 aa17.85■□□□□ 0.45
CIITA-210ENST00000575513 SOS1Q07889 1333 aaPredicted RBP17.84■□□□□ 0.45
CIITA-210ENST00000575513 CCDC184Q52MB2 194 aa17.84■□□□□ 0.45
CIITA-210ENST00000575513 SYT17Q9BSW7 474 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms