RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 TMEM2Q9UHN6 1383 aa23.31■■□□□ 1.32
SCARF1-206ENST00000573852 ESYT1Q9BSJ8 1104 aa23.31■■□□□ 1.32
SCARF1-206ENST00000573852 FOXD4L5Q5VV16 416 aaPredicted RBP23.3■■□□□ 1.32
SCARF1-206ENST00000573852 FOXD4L4Q8WXT5 416 aaPredicted RBP23.3■■□□□ 1.32
SCARF1-206ENST00000573852 PNMA6EA0A0J9YXQ4 647 aa23.3■■□□□ 1.32
SCARF1-206ENST00000573852 SSH2Q76I76 1423 aa23.29■■□□□ 1.32
SCARF1-206ENST00000573852 LRRCC1Q9C099 1032 aa23.29■■□□□ 1.32
SCARF1-206ENST00000573852 TUBGCP6Q96RT7 1819 aa23.29■■□□□ 1.32
SCARF1-206ENST00000573852 PALD1Q9ULE6 856 aa23.29■■□□□ 1.32
SCARF1-206ENST00000573852 NSFL1CQ9UNZ2 370 aaKnown RBP23.29■■□□□ 1.32
SCARF1-206ENST00000573852 TNRQ92752 1358 aa23.28■■□□□ 1.32
SCARF1-206ENST00000573852 FMN2Q9NZ56 1722 aa23.28■■□□□ 1.32
SCARF1-206ENST00000573852 MX1P20591 662 aa23.28■■□□□ 1.32
SCARF1-206ENST00000573852 STK31Q9BXU1 1019 aa23.28■■□□□ 1.32
SCARF1-206ENST00000573852 KDRP35968 1356 aa23.27■■□□□ 1.32
SCARF1-206ENST00000573852 EYA1Q99502 592 aa23.27■■□□□ 1.32
SCARF1-206ENST00000573852 TMEM63CQ9P1W3 806 aa23.27■■□□□ 1.32
SCARF1-206ENST00000573852 FLIIQ13045 1269 aa23.27■■□□□ 1.32
SCARF1-206ENST00000573852 NECTIN2Q92692 538 aa23.26■■□□□ 1.31
SCARF1-206ENST00000573852 CHMLP26374 656 aa23.26■■□□□ 1.31
SCARF1-206ENST00000573852 ATP8B2P98198 1209 aa23.26■■□□□ 1.31
SCARF1-206ENST00000573852 FKBP5Q13451 457 aaPredicted RBP23.26■■□□□ 1.31
SCARF1-206ENST00000573852 CEP170BQ9Y4F5 1589 aaPredicted RBP23.26■■□□□ 1.31
SCARF1-206ENST00000573852 UBR1Q8IWV7 1749 aa23.26■■□□□ 1.31
SCARF1-206ENST00000573852 FLT4P35916 1363 aa23.25■■□□□ 1.31
SCARF1-206ENST00000573852 RILPL2Q969X0 211 aa23.25■■□□□ 1.31
SCARF1-206ENST00000573852 SBNO1A3KN83 1393 aa23.25■■□□□ 1.31
SCARF1-206ENST00000573852 GNAI3P08754 354 aa23.25■■□□□ 1.31
SCARF1-206ENST00000573852 CUL4AQ13619 759 aa23.25■■□□□ 1.31
SCARF1-206ENST00000573852 PDLIM2Q96JY6 352 aa23.25■■□□□ 1.31
SCARF1-206ENST00000573852 TRIM6-TRIM34B2RNG4 842 aa23.24■■□□□ 1.31
SCARF1-206ENST00000573852 IGSF1Q8N6C5 1336 aa23.24■■□□□ 1.31
SCARF1-206ENST00000573852 BRD1O95696 1058 aa23.24■■□□□ 1.31
SCARF1-206ENST00000573852 LTKP29376 864 aa23.24■■□□□ 1.31
SCARF1-206ENST00000573852 MCM2P49736 904 aa23.24■■□□□ 1.31
SCARF1-206ENST00000573852 ANO2Q9NQ90 1003 aa23.24■■□□□ 1.31
SCARF1-206ENST00000573852 NOL8Q76FK4 1167 aaKnown RBP23.23■■□□□ 1.31
SCARF1-206ENST00000573852 UNC5CLQ8IV45 518 aa23.23■■□□□ 1.31
SCARF1-206ENST00000573852 XRN1Q8IZH2 1706 aaKnown RBP23.23■■□□□ 1.31
SCARF1-206ENST00000573852 SYCE3A1L190 88 aa23.23■■□□□ 1.31
SCARF1-206ENST00000573852 MSNP26038 577 aaKnown RBP23.23■■□□□ 1.31
SCARF1-206ENST00000573852 HSP90AA2PQ14568 343 aaPredicted RBP23.23■■□□□ 1.31
SCARF1-206ENST00000573852 CCDC30Q5VVM6 783 aa23.23■■□□□ 1.31
SCARF1-206ENST00000573852 LRSAM1Q6UWE0 723 aa23.23■■□□□ 1.31
SCARF1-206ENST00000573852 MCCP23508 829 aa23.22■■□□□ 1.31
SCARF1-206ENST00000573852 AMPHP49418 695 aa23.22■■□□□ 1.31
SCARF1-206ENST00000573852 STAP2Q9UGK3 403 aa23.22■■□□□ 1.31
SCARF1-206ENST00000573852 LRRFIP2Q9Y608 721 aaKnown RBP23.22■■□□□ 1.31
SCARF1-206ENST00000573852 TTC21AQ8NDW8 1320 aa23.22■■□□□ 1.31
SCARF1-206ENST00000573852 FAM208AQ9UK61 1670 aaKnown RBP23.21■■□□□ 1.31
SCARF1-206ENST00000573852 PTPRUQ92729 1446 aa23.21■■□□□ 1.31
SCARF1-206ENST00000573852 RRP9O43818 475 aaKnown RBP23.21■■□□□ 1.31
SCARF1-206ENST00000573852 ANAPC15P60006 121 aa23.21■■□□□ 1.31
SCARF1-206ENST00000573852 HS1BP3Q53T59 392 aa23.21■■□□□ 1.31
SCARF1-206ENST00000573852 KIAA1211Q6ZU35 1233 aa23.21■■□□□ 1.31
SCARF1-206ENST00000573852 OFD1O75665 1012 aa23.2■■□□□ 1.3
SCARF1-206ENST00000573852 SLC26A8Q96RN1 970 aa23.2■■□□□ 1.3
SCARF1-206ENST00000573852 TPM2P07951 284 aa23.19■■□□□ 1.3
SCARF1-206ENST00000573852 IL25Q9H293 177 aa23.19■■□□□ 1.3
SCARF1-206ENST00000573852 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.19■■□□□ 1.3
SCARF1-206ENST00000573852 HTATSF1O43719 755 aaKnown RBP23.18■■□□□ 1.3
SCARF1-206ENST00000573852 INTS4Q96HW7 963 aaKnown RBP23.18■■□□□ 1.3
SCARF1-206ENST00000573852 UPF3BQ9BZI7 483 aaKnown RBP23.18■■□□□ 1.3
SCARF1-206ENST00000573852 USP44Q9H0E7 712 aa23.18■■□□□ 1.3
SCARF1-206ENST00000573852 PLEKHG1Q9ULL1 1385 aa23.18■■□□□ 1.3
SCARF1-206ENST00000573852 LRRC37A3O60309 1634 aa23.18■■□□□ 1.3
SCARF1-206ENST00000573852 GNAT3A8MTJ3 354 aa23.18■■□□□ 1.3
SCARF1-206ENST00000573852 NOL7Q9UMY1 257 aaKnown RBP23.18■■□□□ 1.3
SCARF1-206ENST00000573852 MBD3O95983 291 aa23.17■■□□□ 1.3
SCARF1-206ENST00000573852 SRCIN1Q9C0H9 1055 aa23.17■■□□□ 1.3
SCARF1-206ENST00000573852 NGDNQ8NEJ9 315 aaKnown RBP23.17■■□□□ 1.3
SCARF1-206ENST00000573852 IL17RAQ96F46 866 aa23.17■■□□□ 1.3
SCARF1-206ENST00000573852 IL1RAPL2Q9NP60 686 aa23.17■■□□□ 1.3
SCARF1-206ENST00000573852 IL17REQ8NFR9 667 aa23.16■■□□□ 1.3
SCARF1-206ENST00000573852 RGPD8O14715 1765 aaPredicted RBP23.14■■□□□ 1.3
SCARF1-206ENST00000573852 NUTM1Q86Y26 1132 aa23.14■■□□□ 1.29
SCARF1-206ENST00000573852 AMOTL2Q9Y2J4 779 aa23.14■■□□□ 1.29
SCARF1-206ENST00000573852 CACNA1FO60840 1977 aa23.14■■□□□ 1.29
SCARF1-206ENST00000573852 UBTFL1P0CB47 393 aaPredicted RBP23.14■■□□□ 1.29
SCARF1-206ENST00000573852 FOXD4L6Q3SYB3 417 aaPredicted RBP23.13■■□□□ 1.29
SCARF1-206ENST00000573852 FOXD4L3Q6VB84 417 aaPredicted RBP23.13■■□□□ 1.29
SCARF1-206ENST00000573852 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.13■■□□□ 1.29
SCARF1-206ENST00000573852 RNF214Q8ND24 703 aa23.13■■□□□ 1.29
SCARF1-206ENST00000573852 PIK3C2AO00443 1686 aa23.13■■□□□ 1.29
SCARF1-206ENST00000573852 ZNF500O60304 480 aaPredicted RBP23.13■■□□□ 1.29
SCARF1-206ENST00000573852 SSH3Q8TE77 659 aa23.13■■□□□ 1.29
SCARF1-206ENST00000573852 AOX1Q06278 1338 aa23.13■■□□□ 1.29
SCARF1-206ENST00000573852 SOS1Q07889 1333 aaPredicted RBP23.13■■□□□ 1.29
SCARF1-206ENST00000573852 TAF7Q15545 349 aaPredicted RBP23.12■■□□□ 1.29
SCARF1-206ENST00000573852 PHAXQ9H814 394 aaKnown RBP23.12■■□□□ 1.29
SCARF1-206ENST00000573852 N4BP2Q86UW6 1770 aaPredicted RBP23.12■■□□□ 1.29
SCARF1-206ENST00000573852 MAP4K4O95819 1239 aaPredicted RBP23.12■■□□□ 1.29
SCARF1-206ENST00000573852 HSPA4P34932 840 aa23.11■■□□□ 1.29
SCARF1-206ENST00000573852 NLRP6P59044 892 aa23.11■■□□□ 1.29
SCARF1-206ENST00000573852 GDPD2Q9HCC8 539 aa23.11■■□□□ 1.29
SCARF1-206ENST00000573852 HOXC9P31274 260 aa23.11■■□□□ 1.29
SCARF1-206ENST00000573852 MAP3K5Q99683 1374 aa23.11■■□□□ 1.29
SCARF1-206ENST00000573852 GADD45BO75293 160 aaPredicted RBP23.1■■□□□ 1.29
SCARF1-206ENST00000573852 NUTM2GQ5VZR2 741 aa23.1■■□□□ 1.29
SCARF1-206ENST00000573852 PXDNLA1KZ92 1463 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms