RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 MRS2Q9HD23 443 aa8.78□□□□□ -1
NUP88-206ENST00000573169 KIF7Q2M1P5 1343 aa8.78□□□□□ -1
NUP88-206ENST00000573169 WNK3Q9BYP7 1800 aa8.77□□□□□ -1
NUP88-206ENST00000573169 A0A1W2PP64 1363 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 EXOC5O00471 708 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 KCNQ2O43526 872 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 ANKRD24Q8TF21 1146 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 IPO9Q96P70 1041 aaKnown RBP8.77□□□□□ -1.01
NUP88-206ENST00000573169 TESK2Q96S53 571 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 PDGFDQ9GZP0 370 aaPredicted RBP8.77□□□□□ -1.01
NUP88-206ENST00000573169 ANO8Q9HCE9 1232 aaPredicted RBP8.77□□□□□ -1.01
NUP88-206ENST00000573169 BMP2KQ9NSY1 1161 aaPredicted RBP8.77□□□□□ -1.01
NUP88-206ENST00000573169 NLRP2Q9NX02 1062 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 TRPC6Q9Y210 931 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 SBF2Q86WG5 1849 aa8.77□□□□□ -1.01
NUP88-206ENST00000573169 PLSCR1O15162 318 aa8.76□□□□□ -1.01
NUP88-206ENST00000573169 IRX6P78412 446 aaPredicted RBP8.76□□□□□ -1.01
NUP88-206ENST00000573169 B4GALNT3Q6L9W6 998 aa8.76□□□□□ -1.01
NUP88-206ENST00000573169 LTV1Q96GA3 475 aaPredicted RBP8.76□□□□□ -1.01
NUP88-206ENST00000573169 ACSBG1Q96GR2 724 aa8.76□□□□□ -1.01
NUP88-206ENST00000573169 CDCA7Q9BWT1 371 aaPredicted RBP8.76□□□□□ -1.01
NUP88-206ENST00000573169 TERF2IPQ9NYB0 399 aa8.76□□□□□ -1.01
NUP88-206ENST00000573169 ERBB3P21860 1342 aa8.76□□□□□ -1.01
NUP88-206ENST00000573169 EDC4Q6P2E9 1401 aaKnown RBP8.75□□□□□ -1.01
NUP88-206ENST00000573169 CDAN1Q8IWY9 1227 aa8.75□□□□□ -1.01
NUP88-206ENST00000573169 TRIM35Q9UPQ4 493 aa8.75□□□□□ -1.01
NUP88-206ENST00000573169 LTN1O94822 1766 aa8.74□□□□□ -1.01
NUP88-206ENST00000573169 USP54Q70EL1 1684 aa8.74□□□□□ -1.01
NUP88-206ENST00000573169 BCL9O00512 1426 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 TNS2Q63HR2 1409 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 ZBTB7AO95365 584 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 MS4A1P11836 297 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 IL2RBP14784 551 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 TXNRD1Q16881 649 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 PNISRQ8TF01 805 aaKnown RBP8.73□□□□□ -1.01
NUP88-206ENST00000573169 IP6K1Q92551 441 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 PUS7Q96PZ0 661 aaKnown RBP8.73□□□□□ -1.01
NUP88-206ENST00000573169 SPON1Q9HCB6 807 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 ABCC6O95255 1503 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 MAP3K19Q56UN5 1328 aa8.73□□□□□ -1.01
NUP88-206ENST00000573169 TCERG1O14776 1098 aaKnown RBP8.72□□□□□ -1.01
NUP88-206ENST00000573169 ANP32AP39687 249 aaKnown RBP8.72□□□□□ -1.01
NUP88-206ENST00000573169 FBXO22Q8NEZ5 403 aa8.72□□□□□ -1.01
NUP88-206ENST00000573169 DDX54Q8TDD1 881 aaKnown RBP8.72□□□□□ -1.01
NUP88-206ENST00000573169 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.72□□□□□ -1.01
NUP88-206ENST00000573169 PPP1R1BQ9UD71 204 aaPredicted RBP8.72□□□□□ -1.01
NUP88-206ENST00000573169 RRS1Q15050 365 aaKnown RBP8.71□□□□□ -1.02
NUP88-206ENST00000573169 FAM9BQ8IZU0 186 aa8.71□□□□□ -1.02
NUP88-206ENST00000573169 COG3Q96JB2 828 aa8.71□□□□□ -1.02
NUP88-206ENST00000573169 GGNBP2Q9H3C7 697 aa8.71□□□□□ -1.02
NUP88-206ENST00000573169 USP47Q96K76 1375 aa8.71□□□□□ -1.02
NUP88-206ENST00000573169 RGPD3A6NKT7 1758 aaPredicted RBP8.71□□□□□ -1.02
NUP88-206ENST00000573169 RGPD4Q7Z3J3 1758 aa8.71□□□□□ -1.02
NUP88-206ENST00000573169 NHSQ6T4R5 1651 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 FYB1O15117 783 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 HOXC9P31274 260 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 AMPHP49418 695 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 SLC15A2Q16348 729 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 IER5LQ5T953 404 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 ASTLQ6HA08 431 aaPredicted RBP8.7□□□□□ -1.02
NUP88-206ENST00000573169 STK32BQ9NY57 414 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 METRNQ9UJH8 293 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 CASZ1Q86V15 1759 aa8.7□□□□□ -1.02
NUP88-206ENST00000573169 ATMINO43313 823 aaPredicted RBP8.69□□□□□ -1.02
NUP88-206ENST00000573169 PTGER2P43116 358 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 KCNQ4P56696 695 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 TMF1P82094 1093 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 MAMSTRQ6ZN01 415 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 USHBP1Q8N6Y0 703 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 CCDC136Q96JN2 1154 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 ANKRD36BQ8N2N9 1353 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 NINLQ9Y2I6 1382 aa8.69□□□□□ -1.02
NUP88-206ENST00000573169 ATN1P54259 1190 aaPredicted RBP8.68□□□□□ -1.02
NUP88-206ENST00000573169 RALBP1Q15311 655 aa8.68□□□□□ -1.02
NUP88-206ENST00000573169 ZNF827Q17R98 1081 aa8.68□□□□□ -1.02
NUP88-206ENST00000573169 NBPF6Q5VWK0 638 aa8.68□□□□□ -1.02
NUP88-206ENST00000573169 NBPF4Q96M43 638 aa8.68□□□□□ -1.02
NUP88-206ENST00000573169 CARD14Q9BXL6 1004 aa8.68□□□□□ -1.02
NUP88-206ENST00000573169 LRRC4BQ9NT99 713 aa8.68□□□□□ -1.02
NUP88-206ENST00000573169 RGPD2P0DJD1 1756 aa8.68□□□□□ -1.02
NUP88-206ENST00000573169 BTAF1O14981 1849 aa8.67□□□□□ -1.02
NUP88-206ENST00000573169 MEGF6O75095 1541 aa8.67□□□□□ -1.02
NUP88-206ENST00000573169 PRIM1P49642 420 aaKnown RBP8.67□□□□□ -1.02
NUP88-206ENST00000573169 MYOM1P52179 1685 aa8.67□□□□□ -1.02
NUP88-206ENST00000573169 SYTL4Q96C24 671 aaPredicted RBP8.67□□□□□ -1.02
NUP88-206ENST00000573169 WDR70Q9NW82 654 aa8.67□□□□□ -1.02
NUP88-206ENST00000573169 FAM208AQ9UK61 1670 aaKnown RBP8.67□□□□□ -1.02
NUP88-206ENST00000573169 G3V3G9 751 aa8.66□□□□□ -1.02
NUP88-206ENST00000573169 HSP90AB2PQ58FF8 381 aa8.66□□□□□ -1.02
NUP88-206ENST00000573169 ZCRB1Q8TBF4 217 aaKnown RBP8.66□□□□□ -1.02
NUP88-206ENST00000573169 PAPPAQ13219 1627 aa8.65□□□□□ -1.02
NUP88-206ENST00000573169 NSD2O96028 1365 aa8.65□□□□□ -1.02
NUP88-206ENST00000573169 PPM1GO15355 546 aaPredicted RBP8.65□□□□□ -1.02
NUP88-206ENST00000573169 YY1P25490 414 aa8.65□□□□□ -1.02
NUP88-206ENST00000573169 RRP1P56182 461 aaKnown RBP8.65□□□□□ -1.02
NUP88-206ENST00000573169 MMRN1Q13201 1228 aa8.65□□□□□ -1.02
NUP88-206ENST00000573169 RTL5Q5HYW3 569 aaPredicted RBP8.65□□□□□ -1.02
NUP88-206ENST00000573169 BACH2Q9BYV9 841 aa8.65□□□□□ -1.02
NUP88-206ENST00000573169 FHDC1Q9C0D6 1143 aaPredicted RBP8.65□□□□□ -1.02
NUP88-206ENST00000573169 NSD3Q9BZ95 1437 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms