RNA–Protein interactions for RNA: ENST00000569687.1

SF3B3-213, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 333 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-213ENST00000569687 KIF1AQ12756 1690 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 TESPA1A2RU30 521 aaPredicted RBP6.81□□□□□ -1.32
SF3B3-213ENST00000569687 ATF3P18847 181 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 DCTN1Q14203 1278 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 ESCO1Q5FWF5 840 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 ITPRIPQ8IWB1 547 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 DDRGK1Q96HY6 314 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 MFRPQ9BY79 579 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 NOP58Q9Y2X3 529 aaKnown RBP6.81□□□□□ -1.32
SF3B3-213ENST00000569687 PIK3C2AO00443 1686 aa6.81□□□□□ -1.32
SF3B3-213ENST00000569687 GNAT3A8MTJ3 354 aa6.8□□□□□ -1.32
SF3B3-213ENST00000569687 RGS3P49796 1198 aa6.8□□□□□ -1.32
SF3B3-213ENST00000569687 NUCB1Q02818 461 aa6.8□□□□□ -1.32
SF3B3-213ENST00000569687 PDAP1Q13442 181 aaKnown RBP6.8□□□□□ -1.32
SF3B3-213ENST00000569687 E2F4Q16254 413 aa6.8□□□□□ -1.32
SF3B3-213ENST00000569687 MCM10Q7L590 875 aa6.8□□□□□ -1.32
SF3B3-213ENST00000569687 ZNF467Q7Z7K2 595 aaPredicted RBP6.8□□□□□ -1.32
SF3B3-213ENST00000569687 ARHGEF25Q86VW2 580 aa6.8□□□□□ -1.32
SF3B3-213ENST00000569687 RTF1Q92541 710 aaKnown RBP6.8□□□□□ -1.32
SF3B3-213ENST00000569687 AKT1S1Q96B36 256 aa6.8□□□□□ -1.32
SF3B3-213ENST00000569687 PTPRCP08575 1304 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 ELL2O00472 640 aaPredicted RBP6.79□□□□□ -1.32
SF3B3-213ENST00000569687 FOXO3O43524 673 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 PAK3O75914 559 aaPredicted RBP6.79□□□□□ -1.32
SF3B3-213ENST00000569687 TAF7Q15545 349 aaPredicted RBP6.79□□□□□ -1.32
SF3B3-213ENST00000569687 IL17REQ8NFR9 667 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 GCC1Q96CN9 775 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 ORAI2Q96SN7 254 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 CHMP4AQ9BY43 222 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 PCDHB8Q9UN66 801 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 PCDHB13Q9Y5F0 798 aa6.79□□□□□ -1.32
SF3B3-213ENST00000569687 USP19O94966 1318 aa6.78□□□□□ -1.32
SF3B3-213ENST00000569687 SOX12O15370 315 aa6.78□□□□□ -1.32
SF3B3-213ENST00000569687 PPP1R37O75864 691 aa6.78□□□□□ -1.32
SF3B3-213ENST00000569687 GCP02774 474 aa6.78□□□□□ -1.32
SF3B3-213ENST00000569687 NUTM2GQ5VZR2 741 aa6.78□□□□□ -1.32
SF3B3-213ENST00000569687 KRT28Q7Z3Y7 464 aa6.78□□□□□ -1.32
SF3B3-213ENST00000569687 RPAP2Q8IXW5 612 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-213ENST00000569687 NFAT5O94916 1531 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 LTBP4Q8N2S1 1624 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 TRPM3Q9HCF6 1732 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-213ENST00000569687 MARF1Q9Y4F3 1742 aaKnown RBP6.77□□□□□ -1.33
SF3B3-213ENST00000569687 ZMYND10O75800 440 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 AMOTQ4VCS5 1084 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 NBPF6Q5VWK0 638 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 SIRT2Q8IXJ6 389 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 REM2Q8IYK8 340 aaPredicted RBP6.77□□□□□ -1.33
SF3B3-213ENST00000569687 NBPF4Q96M43 638 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 DCTPP1Q9H773 170 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 TSPYL4Q9UJ04 414 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 DLG5Q8TDM6 1919 aa6.77□□□□□ -1.33
SF3B3-213ENST00000569687 NCAPD2Q15021 1401 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 PLEKHO1Q53GL0 409 aaPredicted RBP6.76□□□□□ -1.33
SF3B3-213ENST00000569687 CCDC30Q5VVM6 783 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 CHD1LQ86WJ1 897 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 ANKRD44Q8N8A2 993 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 TSPYL2Q9H2G4 693 aaPredicted RBP6.76□□□□□ -1.33
SF3B3-213ENST00000569687 MIS18AQ9NYP9 233 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 CEMIPQ8WUJ3 1361 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 MAP3K5Q99683 1374 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 PHRF1Q9P1Y6 1649 aaKnown RBP6.76□□□□□ -1.33
SF3B3-213ENST00000569687 SLIT3O75094 1523 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 NPHP3Q7Z494 1330 aa6.76□□□□□ -1.33
SF3B3-213ENST00000569687 ALS2Q96Q42 1657 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 PXDNQ92626 1479 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 PLEKHG2Q9H7P9 1386 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 HOXB7P09629 217 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 CCT4P50991 539 aaKnown RBP6.75□□□□□ -1.33
SF3B3-213ENST00000569687 KRT24Q2M2I5 525 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 AKAP4Q5JQC9 854 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 BRINP3Q76B58 766 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 NPM2Q86SE8 214 aaKnown RBP6.75□□□□□ -1.33
SF3B3-213ENST00000569687 RGS12O14924 1447 aa6.75□□□□□ -1.33
SF3B3-213ENST00000569687 EIF5BO60841 1220 aaKnown RBP6.74□□□□□ -1.33
SF3B3-213ENST00000569687 SEC24BO95487 1268 aa6.74□□□□□ -1.33
SF3B3-213ENST00000569687 PSEN1P49768 467 aa6.74□□□□□ -1.33
SF3B3-213ENST00000569687 XPCQ01831 940 aaPredicted RBP6.74□□□□□ -1.33
SF3B3-213ENST00000569687 LTV1Q96GA3 475 aaPredicted RBP6.74□□□□□ -1.33
SF3B3-213ENST00000569687 RBM42Q9BTD8 480 aaKnown RBP6.74□□□□□ -1.33
SF3B3-213ENST00000569687 STK31Q9BXU1 1019 aa6.74□□□□□ -1.33
SF3B3-213ENST00000569687 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.74□□□□□ -1.338e-13■□□□□ 10
SF3B3-213ENST00000569687 SLAIN2Q9P270 581 aa6.74□□□□□ -1.33
SF3B3-213ENST00000569687 TNS3Q68CZ2 1445 aa6.74□□□□□ -1.33
SF3B3-213ENST00000569687 EIF4A1P60842 406 aaKnown RBP6.73□□□□□ -1.33
SF3B3-213ENST00000569687 BMP2KLQ5H9B9 411 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 ANKRD45Q5TZF3 282 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 G2E3Q7L622 706 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 ANKRD24Q8TF21 1146 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 DDX17Q92841 729 aaKnown RBP6.73□□□□□ -1.33
SF3B3-213ENST00000569687 TBC1D32Q96NH3 1257 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 UPF2Q9HAU5 1272 aaKnown RBP6.73□□□□□ -1.33
SF3B3-213ENST00000569687 LGR6Q9HBX8 967 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 AXIN2Q9Y2T1 843 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 OVOS2A0A0G2JMS6 1433 aa6.73□□□□□ -1.33
SF3B3-213ENST00000569687 MED1Q15648 1581 aaPredicted RBP6.73□□□□□ -1.33
SF3B3-213ENST00000569687 NHSL1Q5SYE7 1610 aa6.72□□□□□ -1.33
SF3B3-213ENST00000569687 HEG1Q9ULI3 1381 aa6.72□□□□□ -1.33
SF3B3-213ENST00000569687 RNMTO43148 476 aaKnown RBP6.72□□□□□ -1.33
SF3B3-213ENST00000569687 GNAI3P08754 354 aa6.72□□□□□ -1.33
SF3B3-213ENST00000569687 SMYD5Q6GMV2 418 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms