RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 MAP2K1Q02750 393 aaPredicted RBP13.14□□□□□ -0.31
CLK3-226ENST00000569406 C10orf67Q8IYJ2 551 aa13.14□□□□□ -0.31
CLK3-226ENST00000569406 C17orf53Q8N3J3 647 aaPredicted RBP13.14□□□□□ -0.31
CLK3-226ENST00000569406 DRC1Q96MC2 740 aa13.14□□□□□ -0.31
CLK3-226ENST00000569406 GOLGA6L22H0YM25 854 aa13.13□□□□□ -0.31
CLK3-226ENST00000569406 GTF2F1P35269 517 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-226ENST00000569406 RBSNQ9H1K0 784 aa13.13□□□□□ -0.31
CLK3-226ENST00000569406 DLG5Q8TDM6 1919 aa13.13□□□□□ -0.31
CLK3-226ENST00000569406 HSCBQ8IWL3 235 aa13.13□□□□□ -0.31
CLK3-226ENST00000569406 CEP120Q8N960 986 aa13.13□□□□□ -0.31
CLK3-226ENST00000569406 FOXD4L1Q9NU39 408 aa13.13□□□□□ -0.31
CLK3-226ENST00000569406 CHAF1AQ13111 956 aaPredicted RBP13.12□□□□□ -0.31
CLK3-226ENST00000569406 NBPF20Q3BBV1 942 aa13.12□□□□□ -0.31
CLK3-226ENST00000569406 SLC26A8Q96RN1 970 aa13.12□□□□□ -0.31
CLK3-226ENST00000569406 POLKQ9UBT6 870 aa13.12□□□□□ -0.31
CLK3-226ENST00000569406 FAM135BQ49AJ0 1406 aa13.12□□□□□ -0.31
CLK3-226ENST00000569406 U2AF1L5P0DN76 240 aaPredicted RBP13.12□□□□□ -0.31
CLK3-226ENST00000569406 U2AF1Q01081 240 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLK3-226ENST00000569406 TMPOP42166 694 aaKnown RBP13.11□□□□□ -0.31
CLK3-226ENST00000569406 CAVIN1Q6NZI2 390 aaKnown RBP13.11□□□□□ -0.31
CLK3-226ENST00000569406 TBC1D32Q96NH3 1257 aa13.11□□□□□ -0.31
CLK3-226ENST00000569406 SART3Q15020 963 aaKnown RBP13.11□□□□□ -0.31
CLK3-226ENST00000569406 PDLIM2Q96JY6 352 aa13.11□□□□□ -0.31
CLK3-226ENST00000569406 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLK3-226ENST00000569406 PCDHB15Q9Y5E8 787 aa13.11□□□□□ -0.31
CLK3-226ENST00000569406 PRR36Q9H6K5 1346 aa13.11□□□□□ -0.31
CLK3-226ENST00000569406 NOLC1Q14978 699 aaKnown RBP eCLIP13.1□□□□□ -0.31
CLK3-226ENST00000569406 RNF214Q8ND24 703 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 ZRANB1Q9UGI0 708 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 COG6Q9Y2V7 657 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 TSR2Q969E8 191 aaKnown RBP13.1□□□□□ -0.31
CLK3-226ENST00000569406 TERF2IPQ9NYB0 399 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 ROBO2Q9HCK4 1378 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 GOLGA6L6A8MZA4 724 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 CLUAP1Q96AJ1 413 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 SGSM3Q96HU1 749 aa13.1□□□□□ -0.31
CLK3-226ENST00000569406 NALCNQ8IZF0 1738 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 PPIP5K1Q6PFW1 1433 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 ITSN1Q15811 1721 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 TMEM2Q9UHN6 1383 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 CTR9Q6PD62 1173 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 CALR3Q96L12 384 aaKnown RBP13.09□□□□□ -0.31
CLK3-226ENST00000569406 BCL2L13Q9BXK5 485 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 PTPRUQ92729 1446 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 RIOK3O14730 519 aaKnown RBP13.09□□□□□ -0.31
CLK3-226ENST00000569406 CFAP53Q96M91 514 aa13.09□□□□□ -0.31
CLK3-226ENST00000569406 EDC4Q6P2E9 1401 aaKnown RBP13.08□□□□□ -0.32
CLK3-226ENST00000569406 PEAK1Q9H792 1746 aa13.08□□□□□ -0.32
CLK3-226ENST00000569406 WASLO00401 505 aaPredicted RBP13.08□□□□□ -0.32
CLK3-226ENST00000569406 GUCY2CP25092 1073 aa13.08□□□□□ -0.32
CLK3-226ENST00000569406 KRT222Q8N1A0 295 aa13.08□□□□□ -0.32
CLK3-226ENST00000569406 PRIM1P49642 420 aaKnown RBP13.07□□□□□ -0.32
CLK3-226ENST00000569406 PSMD1Q99460 953 aa13.07□□□□□ -0.32
CLK3-226ENST00000569406 TRIM66O15016 1216 aa13.07□□□□□ -0.32
CLK3-226ENST00000569406 TXNDC2Q86VQ3 553 aa13.07□□□□□ -0.32
CLK3-226ENST00000569406 ANKRD7Q92527 254 aa13.07□□□□□ -0.32
CLK3-226ENST00000569406 RGPD1P0DJD0 1748 aa13.07□□□□□ -0.32
CLK3-226ENST00000569406 PHACTR3Q96KR7 559 aa13.07□□□□□ -0.32
CLK3-226ENST00000569406 LTKP29376 864 aa13.06□□□□□ -0.32
CLK3-226ENST00000569406 DIAPH3Q9NSV4 1193 aa13.06□□□□□ -0.32
CLK3-226ENST00000569406 CTNNA3Q9UI47 895 aa13.06□□□□□ -0.32
CLK3-226ENST00000569406 TNRQ92752 1358 aa13.06□□□□□ -0.32
CLK3-226ENST00000569406 CDK12Q9NYV4 1490 aaPredicted RBP13.06□□□□□ -0.32
CLK3-226ENST00000569406 HSP90AB1P08238 724 aaKnown RBP13.06□□□□□ -0.32
CLK3-226ENST00000569406 DDX41Q9UJV9 622 aaKnown RBP13.06□□□□□ -0.32
CLK3-226ENST00000569406 SUFUQ9UMX1 484 aa13.06□□□□□ -0.32
CLK3-226ENST00000569406 NME9Q86XW9 330 aa13.06□□□□□ -0.32
CLK3-226ENST00000569406 NOL10Q9BSC4 688 aaKnown RBP13.06□□□□□ -0.32
CLK3-226ENST00000569406 E2F4Q16254 413 aa13.05□□□□□ -0.32
CLK3-226ENST00000569406 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.05□□□□□ -0.32
CLK3-226ENST00000569406 AATKQ6ZMQ8 1374 aa13.05□□□□□ -0.32
CLK3-226ENST00000569406 ARID4AP29374 1257 aaPredicted RBP13.05□□□□□ -0.32
CLK3-226ENST00000569406 IL13P35225 146 aa13.05□□□□□ -0.32
CLK3-226ENST00000569406 RGPD8O14715 1765 aaPredicted RBP13.05□□□□□ -0.32
CLK3-226ENST00000569406 CASQ1P31415 396 aa13.05□□□□□ -0.32
CLK3-226ENST00000569406 DONSONQ9NYP3 566 aa13.05□□□□□ -0.32
CLK3-226ENST00000569406 EMILIN1Q9Y6C2 1016 aa13.05□□□□□ -0.32
CLK3-226ENST00000569406 MARF1Q9Y4F3 1742 aaKnown RBP13.05□□□□□ -0.32
CLK3-226ENST00000569406 ZNF853P0CG23 659 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 BIRC2Q13490 618 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 ZSCAN23Q3MJ62 389 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 BRMS1Q9HCU9 246 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 STAG3Q9UJ98 1225 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 SSH2Q76I76 1423 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 EXOSC9Q06265 439 aaKnown RBP13.04□□□□□ -0.32
CLK3-226ENST00000569406 KLHL40Q2TBA0 621 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 ST7Q9NRC1 585 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 JRKLQ9Y4A0 524 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 IL16Q14005 1332 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 U2SURPO15042 1029 aaKnown RBP13.04□□□□□ -0.32
CLK3-226ENST00000569406 DIAPH1O60610 1272 aaKnown RBP13.04□□□□□ -0.32
CLK3-226ENST00000569406 HDGFL2Q7Z4V5 671 aaPredicted RBP13.04□□□□□ -0.32
CLK3-226ENST00000569406 PIBF1Q8WXW3 757 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 CXorf56Q9H5V9 222 aa13.04□□□□□ -0.32
CLK3-226ENST00000569406 ARHGAP23Q9P227 1491 aa13.03□□□□□ -0.32
CLK3-226ENST00000569406 SSH1Q8WYL5 1049 aa13.03□□□□□ -0.32
CLK3-226ENST00000569406 DEF6Q9H4E7 631 aa13.03□□□□□ -0.32
CLK3-226ENST00000569406 TTC12Q9H892 705 aaPredicted RBP13.03□□□□□ -0.32
CLK3-226ENST00000569406 SLIT1O75093 1534 aa13.03□□□□□ -0.32
CLK3-226ENST00000569406 NUDT16Q96DE0 195 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms