RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PIM2Q9P1W9 311 aa16.27■□□□□ 0.2
CDH3-208ENST00000569036 KDM6AO15550 1401 aaPredicted RBP16.27■□□□□ 0.19
CDH3-208ENST00000569036 SBNO2Q9Y2G9 1366 aa16.26■□□□□ 0.19
CDH3-208ENST00000569036 GLTPD2A6NH11 291 aa16.26■□□□□ 0.19
CDH3-208ENST00000569036 DALRD3Q5D0E6 543 aaKnown RBP16.26■□□□□ 0.19
CDH3-208ENST00000569036 PDE4DIPQ5VU43 2346 aa16.26■□□□□ 0.19
CDH3-208ENST00000569036 CCDC85CA6NKD9 419 aa16.24■□□□□ 0.19
CDH3-208ENST00000569036 RASSF7Q02833 373 aa16.24■□□□□ 0.19
CDH3-208ENST00000569036 CD163L1Q9NR16 1453 aa16.23■□□□□ 0.19
CDH3-208ENST00000569036 CGNL1Q0VF96 1302 aa16.23■□□□□ 0.19
CDH3-208ENST00000569036 TMF1P82094 1093 aa16.23■□□□□ 0.19
CDH3-208ENST00000569036 NLGN1Q8N2Q7 840 aa16.23■□□□□ 0.19
CDH3-208ENST00000569036 WBP1LQ9NX94 342 aa16.23■□□□□ 0.19
CDH3-208ENST00000569036 PCDH11XQ9BZA7 1347 aa16.22■□□□□ 0.19
CDH3-208ENST00000569036 PCDH11YQ9BZA8 1340 aa16.22■□□□□ 0.19
CDH3-208ENST00000569036 LOC102724428A0A0B4J2F2 783 aa16.22■□□□□ 0.19
CDH3-208ENST00000569036 POTECB2RU33 542 aa16.22■□□□□ 0.19
CDH3-208ENST00000569036 HSPA8P11142 646 aaKnown RBP16.22■□□□□ 0.19
CDH3-208ENST00000569036 SIK1P57059 783 aa16.22■□□□□ 0.19
CDH3-208ENST00000569036 CCDC88AQ3V6T2 1871 aa16.21■□□□□ 0.19
CDH3-208ENST00000569036 HOXC9P31274 260 aa16.21■□□□□ 0.19
CDH3-208ENST00000569036 ITPK1Q13572 414 aa16.21■□□□□ 0.19
CDH3-208ENST00000569036 VEGFBP49765 207 aa16.2■□□□□ 0.18
CDH3-208ENST00000569036 PIGBQ92521 554 aa16.2■□□□□ 0.18
CDH3-208ENST00000569036 PARP3Q9Y6F1 533 aa16.2■□□□□ 0.18
CDH3-208ENST00000569036 USHBP1Q8N6Y0 703 aa16.19■□□□□ 0.18
CDH3-208ENST00000569036 RAPGEF4Q8WZA2 1011 aa16.19■□□□□ 0.18
CDH3-208ENST00000569036 MAP3K19Q56UN5 1328 aa16.19■□□□□ 0.18
CDH3-208ENST00000569036 GYS1P13807 737 aa16.18■□□□□ 0.18
CDH3-208ENST00000569036 LMNB1P20700 586 aa16.18■□□□□ 0.18
CDH3-208ENST00000569036 NBPF6Q5VWK0 638 aa16.18■□□□□ 0.18
CDH3-208ENST00000569036 CHADLQ6NUI6 762 aa16.18■□□□□ 0.18
CDH3-208ENST00000569036 NBPF4Q96M43 638 aa16.18■□□□□ 0.18
CDH3-208ENST00000569036 EDC4Q6P2E9 1401 aaKnown RBP16.18■□□□□ 0.18
CDH3-208ENST00000569036 RAB3GAP2Q9H2M9 1393 aa16.17■□□□□ 0.18
CDH3-208ENST00000569036 CYP27B1O15528 508 aa16.17■□□□□ 0.18
CDH3-208ENST00000569036 CHRNA5P30532 468 aa16.17■□□□□ 0.18
CDH3-208ENST00000569036 TRAPPC3LQ5T215 181 aa16.17■□□□□ 0.18
CDH3-208ENST00000569036 TATP17735 454 aaPredicted RBP16.16■□□□□ 0.18
CDH3-208ENST00000569036 POTEIP0CG38 1075 aa16.15■□□□□ 0.18
CDH3-208ENST00000569036 POTEJP0CG39 1038 aa16.15■□□□□ 0.18
CDH3-208ENST00000569036 ATP6V1AP38606 617 aa16.15■□□□□ 0.18
CDH3-208ENST00000569036 AMPHP49418 695 aa16.15■□□□□ 0.18
CDH3-208ENST00000569036 RTCBQ9Y3I0 505 aaKnown RBP16.15■□□□□ 0.18
CDH3-208ENST00000569036 ARHGEF1Q92888 912 aaKnown RBP16.14■□□□□ 0.17
CDH3-208ENST00000569036 PASKQ96RG2 1323 aa16.14■□□□□ 0.17
CDH3-208ENST00000569036 COL5A3P25940 1745 aaPredicted RBP16.14■□□□□ 0.17
CDH3-208ENST00000569036 ADRA2BP18089 450 aa16.13■□□□□ 0.17
CDH3-208ENST00000569036 ASAP1Q9ULH1 1129 aa16.13■□□□□ 0.17
CDH3-208ENST00000569036 RTL1A6NKG5 1358 aa16.12■□□□□ 0.17
CDH3-208ENST00000569036 KDRP35968 1356 aa16.12■□□□□ 0.17
CDH3-208ENST00000569036 DLEC1Q9Y238 1755 aa16.11■□□□□ 0.17
CDH3-208ENST00000569036 FBLN1P23142 703 aa16.11■□□□□ 0.17
CDH3-208ENST00000569036 RFC4P35249 363 aa16.11■□□□□ 0.17
CDH3-208ENST00000569036 DDR1Q08345 913 aa16.11■□□□□ 0.17
CDH3-208ENST00000569036 HDGFL2Q7Z4V5 671 aaPredicted RBP16.11■□□□□ 0.17
CDH3-208ENST00000569036 DICER1Q9UPY3 1922 aaKnown RBP16.11■□□□□ 0.17
CDH3-208ENST00000569036 ZNF831Q5JPB2 1677 aa16.11■□□□□ 0.17
CDH3-208ENST00000569036 TMEM88BA6NKF7 163 aa16.1■□□□□ 0.17
CDH3-208ENST00000569036 DPY19L2Q6NUT2 758 aa16.1■□□□□ 0.17
CDH3-208ENST00000569036 CFAP44Q96MT7 982 aa16.1■□□□□ 0.17
CDH3-208ENST00000569036 A0A1W2PP64 1363 aa16.1■□□□□ 0.17
CDH3-208ENST00000569036 SMG6Q86US8 1419 aaKnown RBP16.1■□□□□ 0.17
CDH3-208ENST00000569036 MYH14Q7Z406 1995 aaKnown RBP16.09■□□□□ 0.17
CDH3-208ENST00000569036 MAP2K1Q02750 393 aaPredicted RBP16.09■□□□□ 0.17
CDH3-208ENST00000569036 TMOD3Q9NYL9 352 aa16.09■□□□□ 0.17
CDH3-208ENST00000569036 THSD7BQ9C0I4 1608 aa16.08■□□□□ 0.17
CDH3-208ENST00000569036 NFKBIEO00221 500 aa16.08■□□□□ 0.16
CDH3-208ENST00000569036 NKX1-1Q15270 411 aaPredicted RBP16.08■□□□□ 0.16
CDH3-208ENST00000569036 TMC1Q8TDI8 760 aa16.07■□□□□ 0.16
CDH3-208ENST00000569036 ATG3Q9NT62 314 aa16.07■□□□□ 0.16
CDH3-208ENST00000569036 CNTNAP4Q9C0A0 1308 aa16.06■□□□□ 0.16
CDH3-208ENST00000569036 RASSF10A6NK89 507 aa16.06■□□□□ 0.16
CDH3-208ENST00000569036 RPS6KA4O75676 772 aa16.06■□□□□ 0.16
CDH3-208ENST00000569036 FKBP8Q14318 412 aa16.06■□□□□ 0.16
CDH3-208ENST00000569036 RC3H1Q5TC82 1133 aaKnown RBP16.06■□□□□ 0.16
CDH3-208ENST00000569036 SLC4A9Q96Q91 983 aa16.06■□□□□ 0.16
CDH3-208ENST00000569036 SLC12A5Q9H2X9 1139 aa16.06■□□□□ 0.16
CDH3-208ENST00000569036 WDR33Q9C0J8 1336 aaKnown RBP16.05■□□□□ 0.16
CDH3-208ENST00000569036 COG3Q96JB2 828 aa16.05■□□□□ 0.16
CDH3-208ENST00000569036 SRP68Q9UHB9 627 aaKnown RBP16.05■□□□□ 0.16
CDH3-208ENST00000569036 AFDNP55196 1824 aaKnown RBP16.04■□□□□ 0.16
CDH3-208ENST00000569036 POLRMTO00411 1230 aaKnown RBP16.04■□□□□ 0.16
CDH3-208ENST00000569036 RRS1Q15050 365 aaKnown RBP16.04■□□□□ 0.16
CDH3-208ENST00000569036 LDHDQ86WU2 507 aa16.04■□□□□ 0.16
CDH3-208ENST00000569036 USP42Q9H9J4 1324 aaKnown RBP16.03■□□□□ 0.16
CDH3-208ENST00000569036 ITGBL1O95965 494 aaPredicted RBP16.03■□□□□ 0.16
CDH3-208ENST00000569036 DEFB115Q30KQ5 88 aa16.03■□□□□ 0.16
CDH3-208ENST00000569036 MCOLN1Q9GZU1 580 aa16.03■□□□□ 0.16
CDH3-208ENST00000569036 TERF2IPQ9NYB0 399 aa16.03■□□□□ 0.16
CDH3-208ENST00000569036 SCN4AP35499 1836 aa16.03■□□□□ 0.16
CDH3-208ENST00000569036 LTBP1Q14766 1721 aa16.02■□□□□ 0.16
CDH3-208ENST00000569036 FER1L6Q2WGJ9 1857 aa16.02■□□□□ 0.16
CDH3-208ENST00000569036 ERFEQ4G0M1 354 aa16.02■□□□□ 0.16
CDH3-208ENST00000569036 DDNO94850 711 aaPredicted RBP16.01■□□□□ 0.15
CDH3-208ENST00000569036 PRPF38BQ5VTL8 546 aaKnown RBP16.01■□□□□ 0.15
CDH3-208ENST00000569036 TTLL6Q8N841 843 aa16.01■□□□□ 0.15
CDH3-208ENST00000569036 NRXN2Q9P2S2 1712 aa16.01■□□□□ 0.15
CDH3-208ENST00000569036 ADAMTS7Q9UKP4 1686 aa16.01■□□□□ 0.15
CDH3-208ENST00000569036 ADAMTSL1Q8N6G6 1762 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms