RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 TNS3Q68CZ2 1445 aa22.72■■□□□ 1.23
SMPD3-211ENST00000568373 F6X3S4 739 aa22.72■■□□□ 1.23
SMPD3-211ENST00000568373 OVOS2A0A0G2JMS6 1433 aa22.71■■□□□ 1.23
SMPD3-211ENST00000568373 C1orf141Q5JVX7 400 aa22.71■■□□□ 1.23
SMPD3-211ENST00000568373 CEP85Q6P2H3 762 aa22.7■■□□□ 1.23
SMPD3-211ENST00000568373 SLC4A10Q6U841 1118 aa22.7■■□□□ 1.23
SMPD3-211ENST00000568373 DCTPP1Q9H773 170 aa22.7■■□□□ 1.23
SMPD3-211ENST00000568373 TEFQ10587 303 aa22.7■■□□□ 1.22
SMPD3-211ENST00000568373 NECTIN2Q92692 538 aa22.7■■□□□ 1.22
SMPD3-211ENST00000568373 EIF4A1P60842 406 aaKnown RBP22.69■■□□□ 1.22
SMPD3-211ENST00000568373 FKBP5Q13451 457 aaPredicted RBP22.69■■□□□ 1.22
SMPD3-211ENST00000568373 MPRIPQ6WCQ1 1025 aa22.69■■□□□ 1.22
SMPD3-211ENST00000568373 DAXXQ9UER7 740 aaPredicted RBP22.69■■□□□ 1.22
SMPD3-211ENST00000568373 HDGFL1Q5TGJ6 251 aa22.69■■□□□ 1.22
SMPD3-211ENST00000568373 RNMTO43148 476 aaKnown RBP22.68■■□□□ 1.22
SMPD3-211ENST00000568373 HOXB7P09629 217 aa22.68■■□□□ 1.22
SMPD3-211ENST00000568373 TBC1D32Q96NH3 1257 aa22.68■■□□□ 1.22
SMPD3-211ENST00000568373 COL18A1P39060 1754 aa22.68■■□□□ 1.22
SMPD3-211ENST00000568373 BMP2KLQ5H9B9 411 aa22.67■■□□□ 1.22
SMPD3-211ENST00000568373 N4BP2Q86UW6 1770 aaPredicted RBP22.66■■□□□ 1.22
SMPD3-211ENST00000568373 SPATA31A3Q5VYP0 1347 aa22.66■■□□□ 1.22
SMPD3-211ENST00000568373 BTBD11A6QL63 1104 aa22.66■■□□□ 1.22
SMPD3-211ENST00000568373 ABCC6O95255 1503 aa22.66■■□□□ 1.22
SMPD3-211ENST00000568373 CRYBG1Q9Y4K1 1723 aa22.65■■□□□ 1.22
SMPD3-211ENST00000568373 PXDNLA1KZ92 1463 aa22.65■■□□□ 1.22
SMPD3-211ENST00000568373 SLC4A3P48751 1232 aa22.65■■□□□ 1.22
SMPD3-211ENST00000568373 CHMP4AQ9BY43 222 aa22.65■■□□□ 1.22
SMPD3-211ENST00000568373 CABLES1Q8TDN4 633 aa22.64■■□□□ 1.22
SMPD3-211ENST00000568373 ADAMTS7Q9UKP4 1686 aa22.64■■□□□ 1.21
SMPD3-211ENST00000568373 KCNQ3O43525 872 aa22.63■■□□□ 1.21
SMPD3-211ENST00000568373 BRINP3Q76B58 766 aa22.62■■□□□ 1.21
SMPD3-211ENST00000568373 RAPGEF4Q8WZA2 1011 aa22.62■■□□□ 1.21
SMPD3-211ENST00000568373 NLRP2Q9NX02 1062 aa22.62■■□□□ 1.21
SMPD3-211ENST00000568373 SIPA1L3O60292 1781 aaPredicted RBP22.62■■□□□ 1.21
SMPD3-211ENST00000568373 HMMRO75330 724 aa22.61■■□□□ 1.21
SMPD3-211ENST00000568373 GNAI2P04899 355 aa22.61■■□□□ 1.21
SMPD3-211ENST00000568373 EIF2S2P20042 333 aaKnown RBP22.61■■□□□ 1.21
SMPD3-211ENST00000568373 NBR1Q14596 966 aa22.61■■□□□ 1.21
SMPD3-211ENST00000568373 CPDO75976 1380 aa22.6■■□□□ 1.21
SMPD3-211ENST00000568373 GNAI3P08754 354 aa22.6■■□□□ 1.21
SMPD3-211ENST00000568373 PHAXQ9H814 394 aaKnown RBP22.6■■□□□ 1.21
SMPD3-211ENST00000568373 MFAP1P55081 439 aaKnown RBP22.59■■□□□ 1.21
SMPD3-211ENST00000568373 CHRNA2Q15822 529 aa22.58■■□□□ 1.21
SMPD3-211ENST00000568373 CHPF2Q9P2E5 772 aa22.58■■□□□ 1.21
SMPD3-211ENST00000568373 PLEKHG2Q9H7P9 1386 aa22.58■■□□□ 1.21
SMPD3-211ENST00000568373 CSB-PGBD3P0DP91 1061 aa22.58■■□□□ 1.2
SMPD3-211ENST00000568373 TATP17735 454 aaPredicted RBP22.58■■□□□ 1.2
SMPD3-211ENST00000568373 PLEKHM2Q8IWE5 1019 aa22.58■■□□□ 1.2
SMPD3-211ENST00000568373 C22orf23Q9BZE7 217 aa22.58■■□□□ 1.2
SMPD3-211ENST00000568373 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.58■■□□□ 1.2
SMPD3-211ENST00000568373 HEG1Q9ULI3 1381 aa22.57■■□□□ 1.2
SMPD3-211ENST00000568373 MEGF6O75095 1541 aa22.57■■□□□ 1.2
SMPD3-211ENST00000568373 BECN1Q14457 450 aa22.57■■□□□ 1.2
SMPD3-211ENST00000568373 LTBP4Q8N2S1 1624 aa22.57■■□□□ 1.2
SMPD3-211ENST00000568373 SPG7Q9UQ90 795 aa22.56■■□□□ 1.2
SMPD3-211ENST00000568373 GIGYF1O75420 1035 aaPredicted RBP22.55■■□□□ 1.2
SMPD3-211ENST00000568373 SLAIN2Q9P270 581 aa22.55■■□□□ 1.2
SMPD3-211ENST00000568373 SCN11AQ9UI33 1791 aa22.55■■□□□ 1.2
SMPD3-211ENST00000568373 SOS2Q07890 1332 aaPredicted RBP22.54■■□□□ 1.2
SMPD3-211ENST00000568373 USP44Q9H0E7 712 aa22.54■■□□□ 1.2
SMPD3-211ENST00000568373 KDM6AO15550 1401 aaPredicted RBP22.54■■□□□ 1.2
SMPD3-211ENST00000568373 PHKG2P15735 406 aa22.53■■□□□ 1.2
SMPD3-211ENST00000568373 DBF4Q9UBU7 674 aaPredicted RBP22.53■■□□□ 1.2
SMPD3-211ENST00000568373 C16orf71Q8IYS4 520 aaPredicted RBP22.53■■□□□ 1.2
SMPD3-211ENST00000568373 GSPT1P15170 499 aaKnown RBP22.52■■□□□ 1.2
SMPD3-211ENST00000568373 SRCIN1Q9C0H9 1055 aa22.52■■□□□ 1.2
SMPD3-211ENST00000568373 ATP8B2P98198 1209 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 TTC22Q5TAA0 569 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 PKD1L3Q7Z443 1732 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 APBB1O00213 710 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 SMARCA5O60264 1052 aaPredicted RBP22.51■■□□□ 1.19
SMPD3-211ENST00000568373 UBTFL1P0CB47 393 aaPredicted RBP22.51■■□□□ 1.19
SMPD3-211ENST00000568373 TBC1D9Q6ZT07 1266 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 IFNL2Q8IZJ0 200 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 DNAAF4Q8WXU2 420 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 SLC52A2Q9HAB3 445 aa22.51■■□□□ 1.19
SMPD3-211ENST00000568373 LRRFIP2Q9Y608 721 aaKnown RBP22.51■■□□□ 1.19
SMPD3-211ENST00000568373 PI4KAP2A4QPH2 592 aa22.5■■□□□ 1.19
SMPD3-211ENST00000568373 PI4KAP1Q8N8J0 262 aa22.5■■□□□ 1.19
SMPD3-211ENST00000568373 ANXA1P04083 346 aa22.5■■□□□ 1.19
SMPD3-211ENST00000568373 OTUD7AQ8TE49 926 aaPredicted RBP22.5■■□□□ 1.19
SMPD3-211ENST00000568373 PNMA6EA0A0J9YXQ4 647 aa22.49■■□□□ 1.19
SMPD3-211ENST00000568373 CDC45O75419 566 aa22.49■■□□□ 1.19
SMPD3-211ENST00000568373 ADCY9O60503 1353 aa22.48■■□□□ 1.19
SMPD3-211ENST00000568373 RBM25P49756 843 aaKnown RBP22.48■■□□□ 1.19
SMPD3-211ENST00000568373 BEND3Q5T5X7 828 aa22.48■■□□□ 1.19
SMPD3-211ENST00000568373 BCL11AQ9H165 835 aa22.48■■□□□ 1.19
SMPD3-211ENST00000568373 RTL5Q5HYW3 569 aaPredicted RBP22.48■■□□□ 1.19
SMPD3-211ENST00000568373 ZNF790Q6PG37 636 aa22.48■■□□□ 1.19
SMPD3-211ENST00000568373 PRDM11Q9NQV5 511 aa22.47■■□□□ 1.19
SMPD3-211ENST00000568373 MRC1P22897 1456 aa22.47■■□□□ 1.19
SMPD3-211ENST00000568373 PRAMEF22A3QJZ6 481 aa22.46■■□□□ 1.19
SMPD3-211ENST00000568373 TBC1D2Q9BYX2 928 aa22.46■■□□□ 1.19
SMPD3-211ENST00000568373 EXOC6BQ9Y2D4 811 aa22.46■■□□□ 1.19
SMPD3-211ENST00000568373 CYP27B1O15528 508 aa22.46■■□□□ 1.19
SMPD3-211ENST00000568373 PROSER3Q2NL68 480 aa22.46■■□□□ 1.19
SMPD3-211ENST00000568373 DCAF5Q96JK2 942 aa22.46■■□□□ 1.19
SMPD3-211ENST00000568373 NFATC2IPQ8NCF5 419 aa22.45■■□□□ 1.18
SMPD3-211ENST00000568373 HYPKQ9NX55 129 aa22.45■■□□□ 1.18
SMPD3-211ENST00000568373 USP35Q9P2H5 1018 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms