RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PNNQ9H307 717 aaKnown RBP25.91■■□□□ 1.74
CLN3-225ENST00000566824 SLC52A2Q9HAB3 445 aa25.91■■□□□ 1.74
CLN3-225ENST00000566824 ATG3Q9NT62 314 aa25.91■■□□□ 1.74
CLN3-225ENST00000566824 RUNDC1Q96C34 613 aa25.9■■□□□ 1.74
CLN3-225ENST00000566824 RRP7AQ9Y3A4 280 aaKnown RBP25.9■■□□□ 1.74
CLN3-225ENST00000566824 PALLDQ8WX93 1383 aa25.9■■□□□ 1.74
CLN3-225ENST00000566824 CEMIPQ8WUJ3 1361 aa25.89■■□□□ 1.74
CLN3-225ENST00000566824 PAPPAQ13219 1627 aa25.89■■□□□ 1.73
CLN3-225ENST00000566824 NEFMP07197 916 aa25.88■■□□□ 1.73
CLN3-225ENST00000566824 SENP3-EIF4A1A0A087X0R7 540 aa25.88■■□□□ 1.73
CLN3-225ENST00000566824 TMPOP42166 694 aaKnown RBP25.88■■□□□ 1.73
CLN3-225ENST00000566824 MIER1Q8N108 512 aa25.87■■□□□ 1.73
CLN3-225ENST00000566824 THUMPD2Q9BTF0 503 aaKnown RBP25.87■■□□□ 1.73
CLN3-225ENST00000566824 ANO8Q9HCE9 1232 aaPredicted RBP25.87■■□□□ 1.73
CLN3-225ENST00000566824 TAF1LQ8IZX4 1826 aa25.86■■□□□ 1.73
CLN3-225ENST00000566824 RIPK4P57078 832 aa25.85■■□□□ 1.73
CLN3-225ENST00000566824 SLC39A6Q13433 755 aa25.85■■□□□ 1.73
CLN3-225ENST00000566824 NEUROD2Q15784 382 aa25.85■■□□□ 1.73
CLN3-225ENST00000566824 SLC4A9Q96Q91 983 aa25.85■■□□□ 1.73
CLN3-225ENST00000566824 RTF1Q92541 710 aaKnown RBP25.84■■□□□ 1.73
CLN3-225ENST00000566824 SMARCC1Q92922 1105 aaPredicted RBP25.84■■□□□ 1.73
CLN3-225ENST00000566824 CCNL1Q9UK58 526 aaPredicted RBP25.84■■□□□ 1.73
CLN3-225ENST00000566824 APAF1O14727 1248 aa25.83■■□□□ 1.73
CLN3-225ENST00000566824 HTATSF1O43719 755 aaKnown RBP25.83■■□□□ 1.73
CLN3-225ENST00000566824 FAM9BQ8IZU0 186 aa25.83■■□□□ 1.73
CLN3-225ENST00000566824 C5P01031 1676 aa25.82■■□□□ 1.72
CLN3-225ENST00000566824 TEFQ10587 303 aa25.82■■□□□ 1.72
CLN3-225ENST00000566824 UBR2Q8IWV8 1755 aa25.81■■□□□ 1.72
CLN3-225ENST00000566824 SLC27A3Q5K4L6 730 aa25.81■■□□□ 1.72
CLN3-225ENST00000566824 TRIM35Q9UPQ4 493 aa25.81■■□□□ 1.72
CLN3-225ENST00000566824 KCPQ6ZWJ8 1503 aa25.8■■□□□ 1.72
CLN3-225ENST00000566824 LOC102724428A0A0B4J2F2 783 aa25.8■■□□□ 1.72
CLN3-225ENST00000566824 PSDA5PKW4 1024 aaPredicted RBP25.8■■□□□ 1.72
CLN3-225ENST00000566824 KCNQ3O43525 872 aa25.8■■□□□ 1.72
CLN3-225ENST00000566824 PTCD1O75127 700 aaKnown RBP25.8■■□□□ 1.72
CLN3-225ENST00000566824 SIK1P57059 783 aa25.8■■□□□ 1.72
CLN3-225ENST00000566824 ITPK1Q13572 414 aa25.8■■□□□ 1.72
CLN3-225ENST00000566824 ZNF827Q17R98 1081 aa25.79■■□□□ 1.72
CLN3-225ENST00000566824 RBM42Q9BTD8 480 aaKnown RBP25.79■■□□□ 1.72
CLN3-225ENST00000566824 TUBGCP6Q96RT7 1819 aa25.79■■□□□ 1.72
CLN3-225ENST00000566824 CCER2I3L3R5 266 aa25.78■■□□□ 1.72
CLN3-225ENST00000566824 R3HDM1Q15032 1099 aaKnown RBP25.78■■□□□ 1.72
CLN3-225ENST00000566824 TJP1Q07157 1748 aa25.78■■□□□ 1.72
CLN3-225ENST00000566824 MIS18AQ9NYP9 233 aa25.77■■□□□ 1.72
CLN3-225ENST00000566824 ZNF831Q5JPB2 1677 aa25.77■■□□□ 1.72
CLN3-225ENST00000566824 COL5A3P25940 1745 aaPredicted RBP25.75■■□□□ 1.71
CLN3-225ENST00000566824 ATP6V1AP38606 617 aa25.75■■□□□ 1.71
CLN3-225ENST00000566824 LINC00116Q8NCU8 138 aa25.75■■□□□ 1.71
CLN3-225ENST00000566824 AKT1S1Q96B36 256 aa25.75■■□□□ 1.71
CLN3-225ENST00000566824 BTBD11A6QL63 1104 aa25.74■■□□□ 1.71
CLN3-225ENST00000566824 NBPF14Q5TI25 921 aa25.74■■□□□ 1.71
CLN3-225ENST00000566824 KDM3BQ7LBC6 1761 aa25.74■■□□□ 1.71
CLN3-225ENST00000566824 C4BP0C0L5 1744 aa25.74■■□□□ 1.71
CLN3-225ENST00000566824 TAF7Q15545 349 aaPredicted RBP25.73■■□□□ 1.71
CLN3-225ENST00000566824 ZNF790Q6PG37 636 aa25.73■■□□□ 1.71
CLN3-225ENST00000566824 SLC15A2Q16348 729 aa25.72■■□□□ 1.71
CLN3-225ENST00000566824 PDGFDQ9GZP0 370 aaPredicted RBP25.72■■□□□ 1.71
CLN3-225ENST00000566824 STK32BQ9NY57 414 aa25.72■■□□□ 1.71
CLN3-225ENST00000566824 MYH14Q7Z406 1995 aaKnown RBP25.72■■□□□ 1.71
CLN3-225ENST00000566824 CICQ96RK0 1608 aaPredicted RBP25.72■■□□□ 1.71
CLN3-225ENST00000566824 SMIM5Q71RC9 77 aa25.71■■□□□ 1.71
CLN3-225ENST00000566824 ZNF496Q96IT1 587 aaPredicted RBP25.71■■□□□ 1.71
CLN3-225ENST00000566824 AMIGO3Q86WK7 504 aa25.7■■□□□ 1.71
CLN3-225ENST00000566824 LMOD3Q0VAK6 560 aa25.69■■□□□ 1.7
CLN3-225ENST00000566824 CASZ1Q86V15 1759 aa25.69■■□□□ 1.7
CLN3-225ENST00000566824 UBR3Q6ZT12 1888 aa25.68■■□□□ 1.7
CLN3-225ENST00000566824 DNAJC10Q8IXB1 793 aa25.68■■□□□ 1.7
CLN3-225ENST00000566824 TTC5Q8N0Z6 440 aa25.68■■□□□ 1.7
CLN3-225ENST00000566824 QSER1Q2KHR3 1735 aa25.68■■□□□ 1.7
CLN3-225ENST00000566824 SALL2Q9Y467 1007 aaPredicted RBP25.66■■□□□ 1.7
CLN3-225ENST00000566824 PRAMEF22A3QJZ6 481 aa25.65■■□□□ 1.7
CLN3-225ENST00000566824 HEG1Q9ULI3 1381 aa25.65■■□□□ 1.7
CLN3-225ENST00000566824 PNPLA7Q6ZV29 1317 aa25.64■■□□□ 1.7
CLN3-225ENST00000566824 TFCP2L1Q9NZI6 479 aa25.63■■□□□ 1.69
CLN3-225ENST00000566824 FMNL2Q96PY5 1086 aa25.63■■□□□ 1.69
CLN3-225ENST00000566824 LAS1LQ9Y4W2 734 aaKnown RBP25.63■■□□□ 1.69
CLN3-225ENST00000566824 CYP19A1P11511 503 aaPredicted RBP25.62■■□□□ 1.69
CLN3-225ENST00000566824 VSIG10Q8N0Z9 540 aa25.62■■□□□ 1.69
CLN3-225ENST00000566824 TSPYL4Q9UJ04 414 aa25.62■■□□□ 1.69
CLN3-225ENST00000566824 CHL1O00533 1208 aa25.61■■□□□ 1.69
CLN3-225ENST00000566824 CRKLP46109 303 aaKnown RBP25.61■■□□□ 1.69
CLN3-225ENST00000566824 EIF4A1P60842 406 aaKnown RBP25.61■■□□□ 1.69
CLN3-225ENST00000566824 INTS5Q6P9B9 1019 aaKnown RBP25.61■■□□□ 1.69
CLN3-225ENST00000566824 WWC1Q8IX03 1113 aa25.61■■□□□ 1.69
CLN3-225ENST00000566824 AK7Q96M32 723 aa25.61■■□□□ 1.69
CLN3-225ENST00000566824 GNPATO15228 680 aa25.6■■□□□ 1.69
CLN3-225ENST00000566824 CNTNAP4Q9C0A0 1308 aa25.59■■□□□ 1.69
CLN3-225ENST00000566824 CCDC27Q2M243 656 aa25.59■■□□□ 1.69
CLN3-225ENST00000566824 COL23A1Q86Y22 540 aaPredicted RBP25.59■■□□□ 1.69
CLN3-225ENST00000566824 USP16Q9Y5T5 823 aa25.59■■□□□ 1.69
CLN3-225ENST00000566824 PHF14O94880 888 aa25.58■■□□□ 1.69
CLN3-225ENST00000566824 ZNF853P0CG23 659 aa25.58■■□□□ 1.69
CLN3-225ENST00000566824 RC3H1Q5TC82 1133 aaKnown RBP25.58■■□□□ 1.69
CLN3-225ENST00000566824 KRT24Q2M2I5 525 aa25.57■■□□□ 1.68
CLN3-225ENST00000566824 CCDC87Q9NVE4 849 aa25.56■■□□□ 1.68
CLN3-225ENST00000566824 LAMB4A4D0S4 1761 aa25.55■■□□□ 1.68
CLN3-225ENST00000566824 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.55■■□□□ 1.68
CLN3-225ENST00000566824 CFAP44Q96MT7 982 aa25.55■■□□□ 1.68
CLN3-225ENST00000566824 MBIPQ9NS73 344 aa25.55■■□□□ 1.68
CLN3-225ENST00000566824 BABAM1Q9NWV8 329 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms