RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	TRPM3	Q9HCF6	1732 aa	Predicted RBP	7.74	□□□□□ -1.17
CLN3-223	ENST00000566472	AOX1	Q06278	1338 aa		7.74	□□□□□ -1.17
CLN3-223	ENST00000566472	KDM3B	Q7LBC6	1761 aa		7.74	□□□□□ -1.17
CLN3-223	ENST00000566472	IBTK	Q9P2D0	1353 aa	Predicted RBP	7.73	□□□□□ -1.17
CLN3-223	ENST00000566472	ESCO1	Q5FWF5	840 aa		7.73	□□□□□ -1.17
CLN3-223	ENST00000566472	C14orf37	Q86TY3	774 aa		7.73	□□□□□ -1.17
CLN3-223	ENST00000566472	ARHGEF25	Q86VW2	580 aa		7.73	□□□□□ -1.17
CLN3-223	ENST00000566472	SETD1B	Q9UPS6	1966 aa	Known RBP	7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	DDX11L8	A8MPP1	907 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472		K7ELQ4	463 aa	Predicted RBP	7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	EPB41L2	O43491	1005 aa	Known RBP	7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	HSP90AB1	P08238	724 aa	Known RBP	7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	ATP8B2	P98198	1209 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	FKBP5	Q13451	457 aa	Predicted RBP	7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	HDGFL1	Q5TGJ6	251 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	NUTM2G	Q5VZR2	741 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	KIF2C	Q99661	725 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	SRCIN1	Q9C0H9	1055 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	MIS18A	Q9NYP9	233 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	C1orf167	Q5SNV9	1468 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	ADAMTS7	Q9UKP4	1686 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472	SALL3	Q9BXA9	1300 aa		7.72	□□□□□ -1.17
CLN3-223	ENST00000566472		F6X3S4	739 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	RAB11FIP3	O75154	756 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	REC8	O95072	547 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	SDS	P20132	328 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	MCM4	P33991	863 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	EIF4A1	P60842	406 aa	Known RBP	7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	NBPF6	Q5VWK0	638 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	SLC4A10	Q6U841	1118 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	LTV1	Q96GA3	475 aa	Predicted RBP	7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	NBPF4	Q96M43	638 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	LRRCC1	Q9C099	1032 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	HDAC5	Q9UQL6	1122 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	CACNA1F	O60840	1977 aa		7.71	□□□□□ -1.18
CLN3-223	ENST00000566472	GC	P02774	474 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	UBTFL1	P0CB47	393 aa	Predicted RBP	7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	PDE1A	P54750	535 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	TEF	Q10587	303 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	C1orf141	Q5JVX7	400 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	L1TD1	Q5T7N2	865 aa	Known RBP	7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	ZNF530	Q6P9A1	599 aa	Predicted RBP	7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	SSH3	Q8TE77	659 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	STAP2	Q9UGK3	403 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	HEG1	Q9ULI3	1381 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	ALS2	Q96Q42	1657 aa		7.7	□□□□□ -1.18
CLN3-223	ENST00000566472	ERC2	O15083	957 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	RNMT	O43148	476 aa	Known RBP	7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	POLA2	Q14181	598 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	RAB3GAP1	Q15042	981 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	HSP90AB4P	Q58FF6	505 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	KRT28	Q7Z3Y7	464 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	C16orf71	Q8IYS4	520 aa	Predicted RBP	7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	USHBP1	Q8N6Y0	703 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	ANKRD24	Q8TF21	1146 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	IL17RA	Q96F46	866 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	GBP4	Q96PP9	640 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	USP26	Q9BXU7	913 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	C19orf44	Q9H6X5	657 aa		7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	ISY1	Q9ULR0	285 aa	Known RBP	7.69	□□□□□ -1.18
CLN3-223	ENST00000566472	PXDN	Q92626	1479 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	BTBD11	A6QL63	1104 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	SMARCA5	O60264	1052 aa	Predicted RBP	7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	ALDH1L1	O75891	902 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	MX1	P20591	662 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	MCC	P23508	829 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	MCM2	P49736	904 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	MTX1	Q13505	466 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	CLEC17A	Q6ZS10	378 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	PROSER2	Q86WR7	435 aa	Predicted RBP	7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	OTUD7A	Q8TE49	926 aa	Predicted RBP	7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	DNAAF4	Q8WXU2	420 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	ORAI2	Q96SN7	254 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	USP44	Q9H0E7	712 aa		7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	DBF4	Q9UBU7	674 aa	Predicted RBP	7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	LRRFIP2	Q9Y608	721 aa	Known RBP	7.68	□□□□□ -1.18
CLN3-223	ENST00000566472	PNMA6E	A0A0J9YXQ4	647 aa		7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	ST18	O60284	1047 aa		7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	HSP90AA1	P07900	732 aa	Known RBP	7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	ANAPC15	P60006	121 aa		7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	SKOR2	Q2VWA4	1001 aa	Predicted RBP	7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	BEND3	Q5T5X7	828 aa		7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	CWC22	Q9HCG8	908 aa	Known RBP	7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	EXOC6B	Q9Y2D4	811 aa		7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	ERBB3	P21860	1342 aa		7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	USP42	Q9H9J4	1324 aa	Known RBP	7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	MRC1	P22897	1456 aa		7.67	□□□□□ -1.18
CLN3-223	ENST00000566472	NUCB2	P80303	420 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	LRRC59	Q96AG4	307 aa	Known RBP	7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	KIF1BP	Q96EK5	621 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	ESYT1	Q9BSJ8	1104 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	PHAX	Q9H814	394 aa	Known RBP	7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	LGR6	Q9HBX8	967 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	HYPK	Q9NX55	129 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	CHPF2	Q9P2E5	772 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	ADCY9	O60503	1353 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	TNS3	Q68CZ2	1445 aa		7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	SIPA1L3	O60292	1781 aa	Predicted RBP	7.66	□□□□□ -1.18
CLN3-223	ENST00000566472	FSD2	A1L4K1	749 aa		7.65	□□□□□ -1.18

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