RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ASAP1Q9ULH1 1129 aa13.23□□□□□ -0.29
CLN3-220ENST00000566040 LAMB4A4D0S4 1761 aa13.22□□□□□ -0.29
CLN3-220ENST00000566040 U2AF1L5P0DN76 240 aaPredicted RBP13.22□□□□□ -0.29
CLN3-220ENST00000566040 U2AF1Q01081 240 aaKnown RBP eCLIP13.22□□□□□ -0.29
CLN3-220ENST00000566040 AKAP4Q5JQC9 854 aa13.22□□□□□ -0.29
CLN3-220ENST00000566040 AMIGO3Q86WK7 504 aa13.22□□□□□ -0.29
CLN3-220ENST00000566040 IL17REQ8NFR9 667 aa13.22□□□□□ -0.29
CLN3-220ENST00000566040 ATG3Q9NT62 314 aa13.22□□□□□ -0.29
CLN3-220ENST00000566040 ERVV-2B6SEH9 535 aa13.21□□□□□ -0.29
CLN3-220ENST00000566040 RNMTO43148 476 aaKnown RBP13.21□□□□□ -0.29
CLN3-220ENST00000566040 FCHSD2O94868 740 aa13.21□□□□□ -0.29
CLN3-220ENST00000566040 R3HDM1Q15032 1099 aaKnown RBP13.21□□□□□ -0.29
CLN3-220ENST00000566040 AKT1S1Q96B36 256 aa13.21□□□□□ -0.29
CLN3-220ENST00000566040 ITPK1Q13572 414 aa13.2□□□□□ -0.3
CLN3-220ENST00000566040 TMOD3Q9NYL9 352 aa13.19□□□□□ -0.3
CLN3-220ENST00000566040 HSP90AB1P08238 724 aaKnown RBP13.18□□□□□ -0.3
CLN3-220ENST00000566040 C1orf141Q5JVX7 400 aa13.18□□□□□ -0.3
CLN3-220ENST00000566040 NFATC2IPQ8NCF5 419 aa13.18□□□□□ -0.3
CLN3-220ENST00000566040 SLC52A2Q9HAB3 445 aa13.18□□□□□ -0.3
CLN3-220ENST00000566040 NUDCQ9Y266 331 aa13.18□□□□□ -0.3
CLN3-220ENST00000566040 SLC15A2Q16348 729 aa13.17□□□□□ -0.3
CLN3-220ENST00000566040 SLC27A3Q5K4L6 730 aa13.17□□□□□ -0.3
CLN3-220ENST00000566040 LINC00116Q8NCU8 138 aa13.17□□□□□ -0.3
CLN3-220ENST00000566040 PNPLA7Q6ZV29 1317 aa13.16□□□□□ -0.3
CLN3-220ENST00000566040 DCTN1Q14203 1278 aa13.16□□□□□ -0.3
CLN3-220ENST00000566040 GAS2L2Q8NHY3 880 aa13.16□□□□□ -0.3
CLN3-220ENST00000566040 CCNL1Q9UK58 526 aaPredicted RBP13.16□□□□□ -0.3
CLN3-220ENST00000566040 ADAMTS8Q9UP79 889 aa13.16□□□□□ -0.3
CLN3-220ENST00000566040 BCORQ6W2J9 1755 aa13.16□□□□□ -0.3
CLN3-220ENST00000566040 LOC102724428A0A0B4J2F2 783 aa13.15□□□□□ -0.3
CLN3-220ENST00000566040 GNAT3A8MTJ3 354 aa13.15□□□□□ -0.3
CLN3-220ENST00000566040 SIK1P57059 783 aa13.15□□□□□ -0.3
CLN3-220ENST00000566040 SMIM5Q71RC9 77 aa13.15□□□□□ -0.3
CLN3-220ENST00000566040 KIAA1551Q9HCM1 1747 aa13.15□□□□□ -0.3
CLN3-220ENST00000566040 SCN7AQ01118 1682 aa13.15□□□□□ -0.31
CLN3-220ENST00000566040 KCNQ3O43525 872 aa13.14□□□□□ -0.31
CLN3-220ENST00000566040 CABP4P57796 275 aa13.14□□□□□ -0.31
CLN3-220ENST00000566040 SLC39A6Q13433 755 aa13.14□□□□□ -0.31
CLN3-220ENST00000566040 NFE2L2Q16236 605 aa13.14□□□□□ -0.31
CLN3-220ENST00000566040 MCM10Q7L590 875 aa13.14□□□□□ -0.31
CLN3-220ENST00000566040 CCDC146Q8IYE0 955 aa13.13□□□□□ -0.31
CLN3-220ENST00000566040 SMARCC1Q92922 1105 aaPredicted RBP13.13□□□□□ -0.31
CLN3-220ENST00000566040 THUMPD2Q9BTF0 503 aaKnown RBP13.13□□□□□ -0.31
CLN3-220ENST00000566040 PNISRQ8TF01 805 aaKnown RBP13.12□□□□□ -0.31
CLN3-220ENST00000566040 SGIP1Q9BQI5 828 aa13.12□□□□□ -0.31
CLN3-220ENST00000566040 KIF13BQ9NQT8 1826 aa13.11□□□□□ -0.31
CLN3-220ENST00000566040 HEG1Q9ULI3 1381 aa13.11□□□□□ -0.31
CLN3-220ENST00000566040 TMPOP42166 694 aaKnown RBP13.11□□□□□ -0.31
CLN3-220ENST00000566040 PTGER2P43116 358 aa13.11□□□□□ -0.31
CLN3-220ENST00000566040 TRIM35Q9UPQ4 493 aa13.11□□□□□ -0.31
CLN3-220ENST00000566040 STK32BQ9NY57 414 aa13.1□□□□□ -0.31
CLN3-220ENST00000566040 AFDNP55196 1824 aaKnown RBP13.1□□□□□ -0.31
CLN3-220ENST00000566040 HTATSF1O43719 755 aaKnown RBP13.09□□□□□ -0.31
CLN3-220ENST00000566040 PTCD1O75127 700 aaKnown RBP13.09□□□□□ -0.31
CLN3-220ENST00000566040 ATP6V1AP38606 617 aa13.09□□□□□ -0.31
CLN3-220ENST00000566040 NBPF14Q5TI25 921 aa13.09□□□□□ -0.31
CLN3-220ENST00000566040 COL23A1Q86Y22 540 aaPredicted RBP13.09□□□□□ -0.31
CLN3-220ENST00000566040 ZNF496Q96IT1 587 aaPredicted RBP13.09□□□□□ -0.31
CLN3-220ENST00000566040 NRXN2Q9P2S2 1712 aa13.09□□□□□ -0.31
CLN3-220ENST00000566040 RRP7AQ9Y3A4 280 aaKnown RBP13.09□□□□□ -0.31
CLN3-220ENST00000566040 CNTNAP4Q9C0A0 1308 aa13.09□□□□□ -0.31
CLN3-220ENST00000566040 PRAMEF22A3QJZ6 481 aa13.08□□□□□ -0.32
CLN3-220ENST00000566040 INTS5Q6P9B9 1019 aaKnown RBP13.08□□□□□ -0.32
CLN3-220ENST00000566040 ZNF790Q6PG37 636 aa13.08□□□□□ -0.32
CLN3-220ENST00000566040 DNAJC10Q8IXB1 793 aa13.08□□□□□ -0.32
CLN3-220ENST00000566040 RUNDC1Q96C34 613 aa13.08□□□□□ -0.32
CLN3-220ENST00000566040 ANP32CO43423 234 aa13.07□□□□□ -0.32
CLN3-220ENST00000566040 RBM42Q9BTD8 480 aaKnown RBP13.07□□□□□ -0.32
CLN3-220ENST00000566040 BRCA1P38398 1863 aaKnown RBP13.06□□□□□ -0.32
CLN3-220ENST00000566040 ZBTB7AO95365 584 aa13.06□□□□□ -0.32
CLN3-220ENST00000566040 CYP19A1P11511 503 aaPredicted RBP13.06□□□□□ -0.32
CLN3-220ENST00000566040 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
CLN3-220ENST00000566040 CRKLP46109 303 aaKnown RBP13.05□□□□□ -0.32
CLN3-220ENST00000566040 RIPK4P57078 832 aa13.05□□□□□ -0.32
CLN3-220ENST00000566040 TEFQ10587 303 aa13.05□□□□□ -0.32
CLN3-220ENST00000566040 WDR43Q15061 677 aaKnown RBP eCLIP13.05□□□□□ -0.32
CLN3-220ENST00000566040 RC3H1Q5TC82 1133 aaKnown RBP13.05□□□□□ -0.32
CLN3-220ENST00000566040 MRS2Q9HD23 443 aa13.05□□□□□ -0.32
CLN3-220ENST00000566040 MAPK8IP3Q9UPT6 1336 aa13.05□□□□□ -0.32
CLN3-220ENST00000566040 NUP98P52948 1817 aa13.04□□□□□ -0.32
CLN3-220ENST00000566040 ANKRD31Q8N7Z5 1873 aa13.04□□□□□ -0.32
CLN3-220ENST00000566040 SENP3-EIF4A1A0A087X0R7 540 aa13.04□□□□□ -0.32
CLN3-220ENST00000566040 VSIG10Q8N0Z9 540 aa13.04□□□□□ -0.32
CLN3-220ENST00000566040 SOS1Q07889 1333 aaPredicted RBP13.04□□□□□ -0.32
CLN3-220ENST00000566040 ANKRD36CQ5JPF3 1778 aa13.03□□□□□ -0.32
CLN3-220ENST00000566040 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.03□□□□□ -0.32
CLN3-220ENST00000566040 BTBD11A6QL63 1104 aa13.03□□□□□ -0.32
CLN3-220ENST00000566040 APAF1O14727 1248 aa13.03□□□□□ -0.32
CLN3-220ENST00000566040 GNPATO15228 680 aa13.03□□□□□ -0.32
CLN3-220ENST00000566040 TFCP2L1Q9NZI6 479 aa13.03□□□□□ -0.32
CLN3-220ENST00000566040 ZBTB1Q9Y2K1 713 aa13.03□□□□□ -0.32
CLN3-220ENST00000566040 RPS6KA4O75676 772 aa13.02□□□□□ -0.33
CLN3-220ENST00000566040 SSFA2P28290 1259 aa13.02□□□□□ -0.33
CLN3-220ENST00000566040 TAF7Q15545 349 aaPredicted RBP13.02□□□□□ -0.33
CLN3-220ENST00000566040 AK7Q96M32 723 aa13.02□□□□□ -0.33
CLN3-220ENST00000566040 MTFR1LQ9H019 292 aa13.02□□□□□ -0.33
CLN3-220ENST00000566040 ATF5Q9Y2D1 282 aaPredicted RBP13.02□□□□□ -0.33
CLN3-220ENST00000566040 GOLGB1Q14789 3259 aaKnown RBP13.02□□□□□ -0.33
CLN3-220ENST00000566040 N4BP2Q86UW6 1770 aaPredicted RBP13.02□□□□□ -0.33
CLN3-220ENST00000566040 DLEC1Q9Y238 1755 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms