RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 ZNF521Q96K83 1311 aa16.54■□□□□ 0.24
SF3B3-206ENST00000565990 TRIM37O94972 964 aa16.54■□□□□ 0.24
SF3B3-206ENST00000565990 TAF7Q15545 349 aaPredicted RBP16.53■□□□□ 0.24
SF3B3-206ENST00000565990 WDR63Q8IWG1 891 aa16.53■□□□□ 0.24
SF3B3-206ENST00000565990 THUMPD2Q9BTF0 503 aaKnown RBP16.53■□□□□ 0.24
SF3B3-206ENST00000565990 BABAM1Q9NWV8 329 aa16.53■□□□□ 0.24
SF3B3-206ENST00000565990 TMOD3Q9NYL9 352 aa16.53■□□□□ 0.24
SF3B3-206ENST00000565990 BTAF1O14981 1849 aa16.53■□□□□ 0.24
SF3B3-206ENST00000565990 PLSCR1O15162 318 aa16.52■□□□□ 0.24
SF3B3-206ENST00000565990 TEFQ10587 303 aa16.52■□□□□ 0.24
SF3B3-206ENST00000565990 TNS1Q9HBL0 1735 aaKnown RBP16.51■□□□□ 0.23
SF3B3-206ENST00000565990 SENP3-EIF4A1A0A087X0R7 540 aa16.51■□□□□ 0.23
SF3B3-206ENST00000565990 CHL1O00533 1208 aa16.51■□□□□ 0.23
SF3B3-206ENST00000565990 ZNF853P0CG23 659 aa16.51■□□□□ 0.23
SF3B3-206ENST00000565990 SYTL4Q96C24 671 aaPredicted RBP16.51■□□□□ 0.23
SF3B3-206ENST00000565990 ATG3Q9NT62 314 aa16.51■□□□□ 0.23
SF3B3-206ENST00000565990 CALD1Q05682 793 aaKnown RBP16.5■□□□□ 0.23
SF3B3-206ENST00000565990 CFAP44Q96MT7 982 aa16.5■□□□□ 0.23
SF3B3-206ENST00000565990 IL16Q14005 1332 aa16.49■□□□□ 0.23
SF3B3-206ENST00000565990 UPF1Q92900 1129 aaKnown RBP eCLIP16.49■□□□□ 0.23
SF3B3-206ENST00000565990 ASAP1Q9ULH1 1129 aa16.49■□□□□ 0.23
SF3B3-206ENST00000565990 SALL2Q9Y467 1007 aaPredicted RBP16.49■□□□□ 0.23
SF3B3-206ENST00000565990 BTBD11A6QL63 1104 aa16.48■□□□□ 0.23
SF3B3-206ENST00000565990 PAPPAQ13219 1627 aa16.48■□□□□ 0.23
SF3B3-206ENST00000565990 LY75O60449 1722 aa16.48■□□□□ 0.23
SF3B3-206ENST00000565990 KDM3BQ7LBC6 1761 aa16.47■□□□□ 0.23
SF3B3-206ENST00000565990 APBA3O96018 575 aa16.47■□□□□ 0.23
SF3B3-206ENST00000565990 ZNF790Q6PG37 636 aa16.47■□□□□ 0.23
SF3B3-206ENST00000565990 SMARCC1Q92922 1105 aaPredicted RBP16.47■□□□□ 0.23
SF3B3-206ENST00000565990 IFT57Q9NWB7 429 aa16.47■□□□□ 0.23
SF3B3-206ENST00000565990 RGPD3A6NKT7 1758 aaPredicted RBP16.46■□□□□ 0.23
SF3B3-206ENST00000565990 RGPD4Q7Z3J3 1758 aa16.46■□□□□ 0.23
SF3B3-206ENST00000565990 UBR2Q8IWV8 1755 aa16.46■□□□□ 0.23
SF3B3-206ENST00000565990 GNAI1P63096 354 aa16.46■□□□□ 0.23
SF3B3-206ENST00000565990 HNRNPUQ00839 825 aaKnown RBP eCLIP16.46■□□□□ 0.23
SF3B3-206ENST00000565990 SLC39A6Q13433 755 aa16.46■□□□□ 0.23
SF3B3-206ENST00000565990 MIS18AQ9NYP9 233 aa16.46■□□□□ 0.23
SF3B3-206ENST00000565990 ZNF831Q5JPB2 1677 aa16.46■□□□□ 0.23
SF3B3-206ENST00000565990 KCNQ3O43525 872 aa16.45■□□□□ 0.22
SF3B3-206ENST00000565990 PROM2Q8N271 834 aa16.45■□□□□ 0.22
SF3B3-206ENST00000565990 CAMKK2Q96RR4 588 aa16.45■□□□□ 0.22
SF3B3-206ENST00000565990 SUPT16HQ9Y5B9 1047 aaKnown RBP16.45■□□□□ 0.22
SF3B3-206ENST00000565990 HEG1Q9ULI3 1381 aa16.44■□□□□ 0.22
SF3B3-206ENST00000565990 TRMT2AQ8IZ69 625 aaKnown RBP16.44■□□□□ 0.22
SF3B3-206ENST00000565990 VSIG10Q8N0Z9 540 aa16.44■□□□□ 0.22
SF3B3-206ENST00000565990 SPINK5Q9NQ38 1064 aaPredicted RBP16.44■□□□□ 0.22
SF3B3-206ENST00000565990 EIF4A1P60842 406 aaKnown RBP16.43■□□□□ 0.22
SF3B3-206ENST00000565990 GOLGA2Q08379 1002 aa16.43■□□□□ 0.22
SF3B3-206ENST00000565990 SF3B2Q13435 895 aaKnown RBP16.43■□□□□ 0.22
SF3B3-206ENST00000565990 MBIPQ9NS73 344 aa16.43■□□□□ 0.22
SF3B3-206ENST00000565990 ZBED9Q6R2W3 1325 aa16.43■□□□□ 0.22
SF3B3-206ENST00000565990 PALLDQ8WX93 1383 aa16.42■□□□□ 0.22
SF3B3-206ENST00000565990 KCPQ6ZWJ8 1503 aa16.42■□□□□ 0.22
SF3B3-206ENST00000565990 SLFN5Q08AF3 891 aa16.42■□□□□ 0.22
SF3B3-206ENST00000565990 ZNF496Q96IT1 587 aaPredicted RBP16.42■□□□□ 0.22
SF3B3-206ENST00000565990 SLC4A9Q96Q91 983 aa16.42■□□□□ 0.22
SF3B3-206ENST00000565990 TSPYL4Q9UJ04 414 aa16.42■□□□□ 0.22
SF3B3-206ENST00000565990 LAS1LQ9Y4W2 734 aaKnown RBP16.42■□□□□ 0.22
SF3B3-206ENST00000565990 LOC102724428A0A0B4J2F2 783 aa16.41■□□□□ 0.22
SF3B3-206ENST00000565990 BAG6P46379 1132 aa16.41■□□□□ 0.22
SF3B3-206ENST00000565990 SIK1P57059 783 aa16.41■□□□□ 0.22
SF3B3-206ENST00000565990 SLC27A3Q5K4L6 730 aa16.41■□□□□ 0.22
SF3B3-206ENST00000565990 TTC5Q8N0Z6 440 aa16.41■□□□□ 0.22
SF3B3-206ENST00000565990 CICQ96RK0 1608 aaPredicted RBP16.41■□□□□ 0.22
SF3B3-206ENST00000565990 HMGB2P26583 209 aaKnown RBP16.4■□□□□ 0.22
SF3B3-206ENST00000565990 EN1Q05925 392 aaPredicted RBP16.4■□□□□ 0.22
SF3B3-206ENST00000565990 TXNRD1Q16881 649 aa16.4■□□□□ 0.22
SF3B3-206ENST00000565990 FMNL2Q96PY5 1086 aa16.4■□□□□ 0.22
SF3B3-206ENST00000565990 TAF1LQ8IZX4 1826 aa16.4■□□□□ 0.22
SF3B3-206ENST00000565990 E9PSI1 815 aa16.39■□□□□ 0.21
SF3B3-206ENST00000565990 PTCD1O75127 700 aaKnown RBP16.39■□□□□ 0.21
SF3B3-206ENST00000565990 GIGYF1O75420 1035 aaPredicted RBP16.39■□□□□ 0.21
SF3B3-206ENST00000565990 DEFB132Q7Z7B7 95 aa16.39■□□□□ 0.21
SF3B3-206ENST00000565990 CDCA7LQ96GN5 454 aa16.39■□□□□ 0.21
SF3B3-206ENST00000565990 LRRC4BQ9NT99 713 aa16.39■□□□□ 0.21
SF3B3-206ENST00000565990 EZH2Q15910 746 aaKnown RBP16.38■□□□□ 0.21
SF3B3-206ENST00000565990 TSR2Q969E8 191 aaKnown RBP16.38■□□□□ 0.21
SF3B3-206ENST00000565990 RBM42Q9BTD8 480 aaKnown RBP16.38■□□□□ 0.21
SF3B3-206ENST00000565990 TEX13AQ9BXU3 409 aaPredicted RBP16.38■□□□□ 0.21
SF3B3-206ENST00000565990 MYH16Q9H6N6 1097 aa16.38■□□□□ 0.21
SF3B3-206ENST00000565990 SNRPA1P09661 255 aaKnown RBP16.37■□□□□ 0.21
SF3B3-206ENST00000565990 ATP6V1AP38606 617 aa16.37■□□□□ 0.21
SF3B3-206ENST00000565990 CCNL1Q9UK58 526 aaPredicted RBP16.37■□□□□ 0.21
SF3B3-206ENST00000565990 FANCIQ9NVI1 1328 aa16.37■□□□□ 0.21
SF3B3-206ENST00000565990 TJP1Q07157 1748 aa16.36■□□□□ 0.21
SF3B3-206ENST00000565990 HOXB7P09629 217 aa16.36■□□□□ 0.21
SF3B3-206ENST00000565990 ITPK1Q13572 414 aa16.36■□□□□ 0.21
SF3B3-206ENST00000565990 RREB1Q92766 1687 aa16.36■□□□□ 0.21
SF3B3-206ENST00000565990 COL5A3P25940 1745 aaPredicted RBP16.36■□□□□ 0.21
SF3B3-206ENST00000565990 SOCS7O14512 581 aa16.35■□□□□ 0.21
SF3B3-206ENST00000565990 DUSP27Q5VZP5 1158 aa16.35■□□□□ 0.21
SF3B3-206ENST00000565990 C8orf58Q8NAV2 365 aa16.35■□□□□ 0.21
SF3B3-206ENST00000565990 USP16Q9Y5T5 823 aa16.35■□□□□ 0.21
SF3B3-206ENST00000565990 SOS1Q07889 1333 aaPredicted RBP16.35■□□□□ 0.21
SF3B3-206ENST00000565990 PRAMEF22A3QJZ6 481 aa16.34■□□□□ 0.21
SF3B3-206ENST00000565990 CYP19A1P11511 503 aaPredicted RBP16.34■□□□□ 0.21
SF3B3-206ENST00000565990 KCNQ4P56696 695 aa16.34■□□□□ 0.21
SF3B3-206ENST00000565990 KRT24Q2M2I5 525 aa16.34■□□□□ 0.21
SF3B3-206ENST00000565990 DNAJC10Q8IXB1 793 aa16.34■□□□□ 0.21
SF3B3-206ENST00000565990 MYH14Q7Z406 1995 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms