RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CCDC116Q8IYX3 515 aa8.41□□□□□ -1.06
LINC00560-201ENST00000564593 CYLDQ9NQC7 956 aa8.41□□□□□ -1.06
LINC00560-201ENST00000564593 FAM69CQ0P6D2 419 aa8.4□□□□□ -1.06
LINC00560-201ENST00000564593 SFI1A8K8P3 1242 aa8.39□□□□□ -1.07
LINC00560-201ENST00000564593 SUZ12Q15022 739 aaKnown RBP8.39□□□□□ -1.07
LINC00560-201ENST00000564593 SWI5Q1ZZU3 235 aa8.39□□□□□ -1.07
LINC00560-201ENST00000564593 PPP1R26Q5T8A7 1209 aaPredicted RBP8.39□□□□□ -1.07
LINC00560-201ENST00000564593 ZNF784Q8NCA9 323 aaPredicted RBP8.39□□□□□ -1.07
LINC00560-201ENST00000564593 CLP1Q92989 425 aaKnown RBP8.39□□□□□ -1.07
LINC00560-201ENST00000564593 NR3C2P08235 984 aa8.39□□□□□ -1.07
LINC00560-201ENST00000564593 OSBPL3Q9H4L5 887 aa8.38□□□□□ -1.07
LINC00560-201ENST00000564593 PGPEP1Q9NXJ5 209 aa8.38□□□□□ -1.07
LINC00560-201ENST00000564593 WASF2Q9Y6W5 498 aa8.38□□□□□ -1.07
LINC00560-201ENST00000564593 GZF1Q9H116 711 aaPredicted RBP8.37□□□□□ -1.07
LINC00560-201ENST00000564593 SLAIN2Q9P270 581 aa8.37□□□□□ -1.07
LINC00560-201ENST00000564593 EMILIN1Q9Y6C2 1016 aa8.37□□□□□ -1.07
LINC00560-201ENST00000564593 LILRA1O75019 489 aa8.36□□□□□ -1.07
LINC00560-201ENST00000564593 SSFA2P28290 1259 aa8.36□□□□□ -1.07
LINC00560-201ENST00000564593 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.36□□□□□ -1.07
LINC00560-201ENST00000564593 HINFPQ9BQA5 517 aa8.36□□□□□ -1.07
LINC00560-201ENST00000564593 ATP2B4P23634 1241 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 NNTQ13423 1086 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 PRMT3O60678 531 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 PHLDB3Q6NSJ2 640 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 CYP2U1Q7Z449 544 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 ZFP42Q96MM3 310 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 ZNF358Q9NW07 568 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 IVNS1ABPQ9Y6Y0 642 aa8.35□□□□□ -1.07
LINC00560-201ENST00000564593 TMEM229AB2RXF0 380 aa8.34□□□□□ -1.07
LINC00560-201ENST00000564593 M0R2N6 131 aa8.34□□□□□ -1.07
LINC00560-201ENST00000564593 LGR5O75473 907 aa8.34□□□□□ -1.07
LINC00560-201ENST00000564593 ADD1P35611 737 aaKnown RBP8.34□□□□□ -1.07
LINC00560-201ENST00000564593 GDF10P55107 478 aa8.34□□□□□ -1.07
LINC00560-201ENST00000564593 TSEN2Q8NCE0 465 aaKnown RBP8.34□□□□□ -1.07
LINC00560-201ENST00000564593 STAU1O95793 577 aaKnown RBP8.33□□□□□ -1.08
LINC00560-201ENST00000564593 VSIG8P0DPA2 414 aa8.33□□□□□ -1.08
LINC00560-201ENST00000564593 SCNN1DP51172 638 aa8.33□□□□□ -1.08
LINC00560-201ENST00000564593 PRIMPOLQ96LW4 560 aa8.33□□□□□ -1.08
LINC00560-201ENST00000564593 BACH1O14867 736 aa8.32□□□□□ -1.08
LINC00560-201ENST00000564593 GNRH1P01148 92 aa8.32□□□□□ -1.08
LINC00560-201ENST00000564593 ARID4AP29374 1257 aaPredicted RBP8.32□□□□□ -1.08
LINC00560-201ENST00000564593 KCNMA1Q12791 1236 aa8.32□□□□□ -1.08
LINC00560-201ENST00000564593 CCDC9Q9Y3X0 531 aaKnown RBP8.32□□□□□ -1.08
LINC00560-201ENST00000564593 CCER1Q8TC90 406 aaPredicted RBP8.31□□□□□ -1.08
LINC00560-201ENST00000564593 ETNK1Q9HBU6 452 aa8.31□□□□□ -1.08
LINC00560-201ENST00000564593 SERTAD1Q9UHV2 236 aa8.31□□□□□ -1.08
LINC00560-201ENST00000564593 WASLO00401 505 aaPredicted RBP8.31□□□□□ -1.08
LINC00560-201ENST00000564593 INHAP05111 366 aa8.31□□□□□ -1.08
LINC00560-201ENST00000564593 ESCO1Q5FWF5 840 aa8.31□□□□□ -1.08
LINC00560-201ENST00000564593 TMCO4Q5TGY1 634 aa8.31□□□□□ -1.08
LINC00560-201ENST00000564593 GNEQ9Y223 722 aaKnown RBP8.31□□□□□ -1.08
LINC00560-201ENST00000564593 CBLBQ13191 982 aa8.3□□□□□ -1.08
LINC00560-201ENST00000564593 OCLNQ16625 522 aa8.3□□□□□ -1.08
LINC00560-201ENST00000564593 TXNDC2Q86VQ3 553 aa8.3□□□□□ -1.08
LINC00560-201ENST00000564593 ITPKCQ96DU7 683 aa8.3□□□□□ -1.08
LINC00560-201ENST00000564593 RAB6BQ9NRW1 208 aa8.3□□□□□ -1.08
LINC00560-201ENST00000564593 CXXC1Q9P0U4 656 aaPredicted RBP8.3□□□□□ -1.08
LINC00560-201ENST00000564593 ZIC2O95409 532 aaPredicted RBP8.29□□□□□ -1.08
LINC00560-201ENST00000564593 ADH1AP07327 375 aa8.29□□□□□ -1.08
LINC00560-201ENST00000564593 WDR4P57081 412 aaKnown RBP8.29□□□□□ -1.08
LINC00560-201ENST00000564593 TNS4Q8IZW8 715 aa8.29□□□□□ -1.08
LINC00560-201ENST00000564593 C1orf216Q8TAB5 229 aa8.29□□□□□ -1.08
LINC00560-201ENST00000564593 ARHGEF10LQ9HCE6 1279 aa8.29□□□□□ -1.08
LINC00560-201ENST00000564593 WEE1P30291 646 aa8.28□□□□□ -1.08
LINC00560-201ENST00000564593 GSK3AP49840 483 aa8.28□□□□□ -1.08
LINC00560-201ENST00000564593 MRPL14Q6P1L8 145 aaKnown RBP8.28□□□□□ -1.08
LINC00560-201ENST00000564593 KLF16Q9BXK1 252 aaPredicted RBP8.28□□□□□ -1.08
LINC00560-201ENST00000564593 SCNN1AP37088 669 aa8.27□□□□□ -1.09
LINC00560-201ENST00000564593 SCARF1Q14162 830 aa8.27□□□□□ -1.09
LINC00560-201ENST00000564593 SLC4A9Q96Q91 983 aa8.27□□□□□ -1.09
LINC00560-201ENST00000564593 ZFAND3Q9H8U3 227 aa8.27□□□□□ -1.09
LINC00560-201ENST00000564593 Q6ZVU0 165 aa8.27□□□□□ -1.09
LINC00560-201ENST00000564593 TAS1R3Q7RTX0 852 aa8.27□□□□□ -1.09
LINC00560-201ENST00000564593 MTMR7Q9Y216 660 aa8.27□□□□□ -1.09
LINC00560-201ENST00000564593 A0A1W2PRU2 124 aa8.26□□□□□ -1.09
LINC00560-201ENST00000564593 TIMP2P16035 220 aa8.26□□□□□ -1.09
LINC00560-201ENST00000564593 KDF1Q8NAX2 398 aaPredicted RBP8.26□□□□□ -1.09
LINC00560-201ENST00000564593 SCG3Q8WXD2 468 aaKnown RBP8.26□□□□□ -1.09
LINC00560-201ENST00000564593 CNKSR1Q969H4 720 aa8.26□□□□□ -1.09
LINC00560-201ENST00000564593 XAGE2Q96GT9 111 aa8.26□□□□□ -1.09
LINC00560-201ENST00000564593 AGBL1Q96MI9 1066 aa8.26□□□□□ -1.09
LINC00560-201ENST00000564593 ATAD2Q6PL18 1390 aa8.25□□□□□ -1.09
LINC00560-201ENST00000564593 IL2RAP01589 272 aa8.25□□□□□ -1.09
LINC00560-201ENST00000564593 IGFBP4P22692 258 aa8.25□□□□□ -1.09
LINC00560-201ENST00000564593 SMTNP53814 917 aa8.25□□□□□ -1.09
LINC00560-201ENST00000564593 EPHA4P54764 986 aa8.25□□□□□ -1.09
LINC00560-201ENST00000564593 SND1Q7KZF4 910 aaKnown RBP eCLIP8.25□□□□□ -1.09
LINC00560-201ENST00000564593 GAS2L2Q8NHY3 880 aa8.25□□□□□ -1.09
LINC00560-201ENST00000564593 PURBQ96QR8 312 aaKnown RBP8.25□□□□□ -1.09
LINC00560-201ENST00000564593 ESYT1Q9BSJ8 1104 aa8.25□□□□□ -1.09
LINC00560-201ENST00000564593 A6NJY4 79 aa8.24□□□□□ -1.09
LINC00560-201ENST00000564593 PTGIRP43119 386 aa8.24□□□□□ -1.09
LINC00560-201ENST00000564593 SERPINB4P48594 390 aa8.24□□□□□ -1.09
LINC00560-201ENST00000564593 FKBP5Q13451 457 aaPredicted RBP8.24□□□□□ -1.09
LINC00560-201ENST00000564593 MKNK1Q9BUB5 465 aa8.24□□□□□ -1.09
LINC00560-201ENST00000564593 TSPAN10Q9H1Z9 355 aaPredicted RBP8.24□□□□□ -1.09
LINC00560-201ENST00000564593 SOBPA7XYQ1 873 aa8.23□□□□□ -1.09
LINC00560-201ENST00000564593 RELBQ01201 579 aa8.23□□□□□ -1.09
LINC00560-201ENST00000564593 CLN3Q13286 438 aa8.23□□□□□ -1.09
LINC00560-201ENST00000564593 TLR1Q15399 786 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms