RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 USHBP1Q8N6Y0 703 aa11.07□□□□□ -0.64
HERPUD1-206ENST00000563343 BCS1LQ9Y276 419 aa11.07□□□□□ -0.64
HERPUD1-206ENST00000563343 PCDH11XQ9BZA7 1347 aa11.07□□□□□ -0.64
HERPUD1-206ENST00000563343 PCDH11YQ9BZA8 1340 aa11.07□□□□□ -0.64
HERPUD1-206ENST00000563343 A0A0G2JLW4 131 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 ZBTB22O15209 634 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 MMP10P09238 476 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 KCNA3P22001 575 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 ARHGAP27Q6ZUM4 889 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 KIF20BQ96Q89 1820 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 NCAPD2Q15021 1401 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 TIAM2Q8IVF5 1701 aa11.06□□□□□ -0.64
HERPUD1-206ENST00000563343 MYCNP04198 464 aaPredicted RBP11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 HSPA1AP0DMV8 641 aaKnown RBP11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 HSPA1BP0DMV9 641 aaKnown RBP11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 AMPHP49418 695 aa11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 CACNB1Q02641 598 aaPredicted RBP11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 ITPK1Q13572 414 aa11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 C9orf131Q5VYM1 1079 aa11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 TMC1Q8TDI8 760 aa11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 PIGBQ92521 554 aa11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 SMARCC1Q92922 1105 aaPredicted RBP11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 ANKRD26Q9UPS8 1709 aa11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 DLEC1Q9Y238 1755 aa11.05□□□□□ -0.64
HERPUD1-206ENST00000563343 LOC102724428A0A0B4J2F2 783 aa11.04□□□□□ -0.64
HERPUD1-206ENST00000563343 DPEP1P16444 411 aa11.04□□□□□ -0.64
HERPUD1-206ENST00000563343 SIK1P57059 783 aa11.04□□□□□ -0.64
HERPUD1-206ENST00000563343 C16orf71Q8IYS4 520 aaPredicted RBP11.04□□□□□ -0.64
HERPUD1-206ENST00000563343 RAPGEF4Q8WZA2 1011 aa11.04□□□□□ -0.64
HERPUD1-206ENST00000563343 GNPATO15228 680 aa11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 FCHSD2O94868 740 aa11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 TATP17735 454 aaPredicted RBP11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 NKX1-1Q15270 411 aaPredicted RBP11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 RRAGCQ9HB90 399 aa11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 TERF2IPQ9NYB0 399 aa11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 ADAMTS7Q9UKP4 1686 aa11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 KDM2BQ8NHM5 1336 aa11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 KDRP35968 1356 aa11.03□□□□□ -0.64
HERPUD1-206ENST00000563343 DICER1Q9UPY3 1922 aaKnown RBP11.02□□□□□ -0.65
HERPUD1-206ENST00000563343 COG3Q96JB2 828 aa11.02□□□□□ -0.65
HERPUD1-206ENST00000563343 DCAF5Q96JK2 942 aa11.02□□□□□ -0.65
HERPUD1-206ENST00000563343 PUS7Q96PZ0 661 aaKnown RBP11.02□□□□□ -0.65
HERPUD1-206ENST00000563343 AFDNP55196 1824 aaKnown RBP11.02□□□□□ -0.65
HERPUD1-206ENST00000563343 INSRP06213 1382 aa11.02□□□□□ -0.65
HERPUD1-206ENST00000563343 KDM6AO15550 1401 aaPredicted RBP11.01□□□□□ -0.65
HERPUD1-206ENST00000563343 VIRMAQ69YN4 1812 aaKnown RBP11.01□□□□□ -0.65
HERPUD1-206ENST00000563343 RRS1Q15050 365 aaKnown RBP11.01□□□□□ -0.65
HERPUD1-206ENST00000563343 SMC1BQ8NDV3 1235 aa11.01□□□□□ -0.65
HERPUD1-206ENST00000563343 SMG6Q86US8 1419 aaKnown RBP11.01□□□□□ -0.65
HERPUD1-206ENST00000563343 RNF181Q9P0P0 153 aa11□□□□□ -0.65
HERPUD1-206ENST00000563343 ASAP1Q9ULH1 1129 aa11□□□□□ -0.65
HERPUD1-206ENST00000563343 NRXN2Q9P2S2 1712 aa11□□□□□ -0.65
HERPUD1-206ENST00000563343 TJP1Q07157 1748 aa10.99□□□□□ -0.65
HERPUD1-206ENST00000563343 GYS1P13807 737 aa10.99□□□□□ -0.65
HERPUD1-206ENST00000563343 TMF1P82094 1093 aa10.99□□□□□ -0.65
HERPUD1-206ENST00000563343 HSP90AB2PQ58FF8 381 aa10.99□□□□□ -0.65
HERPUD1-206ENST00000563343 NLGN1Q8N2Q7 840 aa10.99□□□□□ -0.65
HERPUD1-206ENST00000563343 SLC4A9Q96Q91 983 aa10.99□□□□□ -0.65
HERPUD1-206ENST00000563343 CCDC87Q9NVE4 849 aa10.99□□□□□ -0.65
HERPUD1-206ENST00000563343 ATP6V1AP38606 617 aa10.98□□□□□ -0.65
HERPUD1-206ENST00000563343 ARHGEF1Q92888 912 aaKnown RBP10.98□□□□□ -0.65
HERPUD1-206ENST00000563343 SIN3AQ96ST3 1273 aa10.98□□□□□ -0.65
HERPUD1-206ENST00000563343 ATG3Q9NT62 314 aa10.98□□□□□ -0.65
HERPUD1-206ENST00000563343 KIF24Q5T7B8 1368 aa10.98□□□□□ -0.65
HERPUD1-206ENST00000563343 PIM2Q9P1W9 311 aa10.97□□□□□ -0.65
HERPUD1-206ENST00000563343 FLT4P35916 1363 aa10.97□□□□□ -0.65
HERPUD1-206ENST00000563343 ZC3H4Q9UPT8 1303 aaKnown RBP10.96□□□□□ -0.65
HERPUD1-206ENST00000563343 FYB1O15117 783 aa10.96□□□□□ -0.65
HERPUD1-206ENST00000563343 TRAPPC3LQ5T215 181 aa10.96□□□□□ -0.65
HERPUD1-206ENST00000563343 RC3H1Q5TC82 1133 aaKnown RBP10.96□□□□□ -0.65
HERPUD1-206ENST00000563343 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.65
HERPUD1-206ENST00000563343 RTCBQ9Y3I0 505 aaKnown RBP10.96□□□□□ -0.65
HERPUD1-206ENST00000563343 FER1L6Q2WGJ9 1857 aa10.95□□□□□ -0.66
HERPUD1-206ENST00000563343 TONSLQ96HA7 1378 aa10.95□□□□□ -0.66
HERPUD1-206ENST00000563343 CNTNAP4Q9C0A0 1308 aa10.95□□□□□ -0.66
HERPUD1-206ENST00000563343 POTECB2RU33 542 aa10.95□□□□□ -0.66
HERPUD1-206ENST00000563343 DALRD3Q5D0E6 543 aaKnown RBP10.95□□□□□ -0.66
HERPUD1-206ENST00000563343 TMOD3Q9NYL9 352 aa10.95□□□□□ -0.66
HERPUD1-206ENST00000563343 PARP3Q9Y6F1 533 aa10.95□□□□□ -0.66
HERPUD1-206ENST00000563343 GLTPD2A6NH11 291 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 RPS6KA4O75676 772 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 CHRNA5P30532 468 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 RASSF7Q02833 373 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 DDR1Q08345 913 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 TESK2Q96S53 571 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 CARD11Q9BXL7 1154 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 GGNBP2Q9H3C7 697 aa10.94□□□□□ -0.66
HERPUD1-206ENST00000563343 ANKRD31Q8N7Z5 1873 aa10.93□□□□□ -0.66
HERPUD1-206ENST00000563343 FOXN1O15353 648 aa10.93□□□□□ -0.66
HERPUD1-206ENST00000563343 VEGFAP15692 232 aaPredicted RBP10.93□□□□□ -0.66
HERPUD1-206ENST00000563343 PHKG2P15735 406 aa10.93□□□□□ -0.66
HERPUD1-206ENST00000563343 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.93□□□□□ -0.66
HERPUD1-206ENST00000563343 CACNA1SQ13698 1873 aa10.92□□□□□ -0.66
HERPUD1-206ENST00000563343 PRDM10Q9NQV6 1147 aa10.92□□□□□ -0.66
HERPUD1-206ENST00000563343 SPG7Q9UQ90 795 aa10.92□□□□□ -0.66
HERPUD1-206ENST00000563343 RFC4P35249 363 aa10.91□□□□□ -0.66
HERPUD1-206ENST00000563343 FKBP8Q14318 412 aa10.91□□□□□ -0.66
HERPUD1-206ENST00000563343 PCDH10Q9P2E7 1040 aa10.91□□□□□ -0.66
HERPUD1-206ENST00000563343 SRP68Q9UHB9 627 aaKnown RBP10.91□□□□□ -0.66
HERPUD1-206ENST00000563343 COL11A2P13942 1736 aaPredicted RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms