RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 RGPD4Q7Z3J3 1758 aa24.65■■□□□ 1.54
RAB40C-207ENST00000563109 CALD1Q05682 793 aaKnown RBP24.65■■□□□ 1.54
RAB40C-207ENST00000563109 CCDC27Q2M243 656 aa24.65■■□□□ 1.54
RAB40C-207ENST00000563109 NFATC2IPQ8NCF5 419 aa24.65■■□□□ 1.54
RAB40C-207ENST00000563109 PIGBQ92521 554 aa24.65■■□□□ 1.54
RAB40C-207ENST00000563109 THUMPD2Q9BTF0 503 aaKnown RBP24.64■■□□□ 1.54
RAB40C-207ENST00000563109 SALL2Q9Y467 1007 aaPredicted RBP24.64■■□□□ 1.54
RAB40C-207ENST00000563109 APBA3O96018 575 aa24.63■■□□□ 1.53
RAB40C-207ENST00000563109 PTF1AQ7RTS3 328 aa24.63■■□□□ 1.53
RAB40C-207ENST00000563109 EP400Q96L91 3159 aa24.62■■□□□ 1.53
RAB40C-207ENST00000563109 UPF1Q92900 1129 aaKnown RBP eCLIP24.61■■□□□ 1.53
RAB40C-207ENST00000563109 SMARCC1Q92922 1105 aaPredicted RBP24.61■■□□□ 1.53
RAB40C-207ENST00000563109 BAG6P46379 1132 aa24.6■■□□□ 1.53
RAB40C-207ENST00000563109 TAF7Q15545 349 aaPredicted RBP24.6■■□□□ 1.53
RAB40C-207ENST00000563109 KDM3BQ7LBC6 1761 aa24.59■■□□□ 1.53
RAB40C-207ENST00000563109 LY75O60449 1722 aa24.59■■□□□ 1.53
RAB40C-207ENST00000563109 BTBD11A6QL63 1104 aa24.59■■□□□ 1.53
RAB40C-207ENST00000563109 WWC1Q8IX03 1113 aa24.59■■□□□ 1.53
RAB40C-207ENST00000563109 PALLDQ8WX93 1383 aa24.58■■□□□ 1.53
RAB40C-207ENST00000563109 HNRNPUQ00839 825 aaKnown RBP eCLIP24.58■■□□□ 1.53
RAB40C-207ENST00000563109 TTC5Q8N0Z6 440 aa24.58■■□□□ 1.53
RAB40C-207ENST00000563109 UBR2Q8IWV8 1755 aa24.57■■□□□ 1.52
RAB40C-207ENST00000563109 ASAP1Q9ULH1 1129 aa24.57■■□□□ 1.52
RAB40C-207ENST00000563109 ATG3Q9NT62 314 aa24.56■■□□□ 1.52
RAB40C-207ENST00000563109 PLSCR1O15162 318 aa24.55■■□□□ 1.52
RAB40C-207ENST00000563109 BABAM1Q9NWV8 329 aa24.55■■□□□ 1.52
RAB40C-207ENST00000563109 LAS1LQ9Y4W2 734 aaKnown RBP24.55■■□□□ 1.52
RAB40C-207ENST00000563109 SLC39A6Q13433 755 aa24.54■■□□□ 1.52
RAB40C-207ENST00000563109 WDR63Q8IWG1 891 aa24.54■■□□□ 1.52
RAB40C-207ENST00000563109 TSPYL4Q9UJ04 414 aa24.54■■□□□ 1.52
RAB40C-207ENST00000563109 GNAI1P63096 354 aa24.53■■□□□ 1.52
RAB40C-207ENST00000563109 ZNF790Q6PG37 636 aa24.53■■□□□ 1.52
RAB40C-207ENST00000563109 IFT57Q9NWB7 429 aa24.53■■□□□ 1.52
RAB40C-207ENST00000563109 IL16Q14005 1332 aa24.53■■□□□ 1.52
RAB40C-207ENST00000563109 RREB1Q92766 1687 aa24.53■■□□□ 1.52
RAB40C-207ENST00000563109 KCPQ6ZWJ8 1503 aa24.52■■□□□ 1.52
RAB40C-207ENST00000563109 CFAP44Q96MT7 982 aa24.52■■□□□ 1.52
RAB40C-207ENST00000563109 ZNF831Q5JPB2 1677 aa24.52■■□□□ 1.52
RAB40C-207ENST00000563109 EN1Q05925 392 aaPredicted RBP24.51■■□□□ 1.51
RAB40C-207ENST00000563109 RBM42Q9BTD8 480 aaKnown RBP24.51■■□□□ 1.51
RAB40C-207ENST00000563109 MIS18AQ9NYP9 233 aa24.51■■□□□ 1.51
RAB40C-207ENST00000563109 PTCD1O75127 700 aaKnown RBP24.5■■□□□ 1.51
RAB40C-207ENST00000563109 DEFB132Q7Z7B7 95 aa24.5■■□□□ 1.51
RAB40C-207ENST00000563109 ZNF521Q96K83 1311 aa24.5■■□□□ 1.51
RAB40C-207ENST00000563109 SLC27A3Q5K4L6 730 aa24.49■■□□□ 1.51
RAB40C-207ENST00000563109 FMNL2Q96PY5 1086 aa24.49■■□□□ 1.51
RAB40C-207ENST00000563109 CCNL1Q9UK58 526 aaPredicted RBP24.49■■□□□ 1.51
RAB40C-207ENST00000563109 CICQ96RK0 1608 aaPredicted RBP24.49■■□□□ 1.51
RAB40C-207ENST00000563109 LOC102724428A0A0B4J2F2 783 aa24.48■■□□□ 1.51
RAB40C-207ENST00000563109 CHL1O00533 1208 aa24.48■■□□□ 1.51
RAB40C-207ENST00000563109 C5P01031 1676 aa24.48■■□□□ 1.51
RAB40C-207ENST00000563109 SIK1P57059 783 aa24.48■■□□□ 1.51
RAB40C-207ENST00000563109 EZH2Q15910 746 aaKnown RBP24.48■■□□□ 1.51
RAB40C-207ENST00000563109 CAMKK2Q96RR4 588 aa24.48■■□□□ 1.51
RAB40C-207ENST00000563109 TJP1Q07157 1748 aa24.47■■□□□ 1.51
RAB40C-207ENST00000563109 NUP188Q5SRE5 1749 aa24.47■■□□□ 1.51
RAB40C-207ENST00000563109 SOCS7O14512 581 aa24.47■■□□□ 1.51
RAB40C-207ENST00000563109 ZNF853P0CG23 659 aa24.47■■□□□ 1.51
RAB40C-207ENST00000563109 TXNRD1Q16881 649 aa24.47■■□□□ 1.51
RAB40C-207ENST00000563109 KCNQ3O43525 872 aa24.46■■□□□ 1.51
RAB40C-207ENST00000563109 HMGB2P26583 209 aaKnown RBP24.46■■□□□ 1.51
RAB40C-207ENST00000563109 GOLGA2Q08379 1002 aa24.46■■□□□ 1.51
RAB40C-207ENST00000563109 MBIPQ9NS73 344 aa24.46■■□□□ 1.51
RAB40C-207ENST00000563109 TAF1LQ8IZX4 1826 aa24.46■■□□□ 1.51
RAB40C-207ENST00000563109 LAMB4A4D0S4 1761 aa24.45■■□□□ 1.5
RAB40C-207ENST00000563109 ZBED9Q6R2W3 1325 aa24.45■■□□□ 1.5
RAB40C-207ENST00000563109 ATP6V1AP38606 617 aa24.45■■□□□ 1.5
RAB40C-207ENST00000563109 ZNF496Q96IT1 587 aaPredicted RBP24.45■■□□□ 1.5
RAB40C-207ENST00000563109 MYH16Q9H6N6 1097 aa24.45■■□□□ 1.5
RAB40C-207ENST00000563109 COL5A3P25940 1745 aaPredicted RBP24.44■■□□□ 1.5
RAB40C-207ENST00000563109 HEG1Q9ULI3 1381 aa24.44■■□□□ 1.5
RAB40C-207ENST00000563109 VSIG10Q8N0Z9 540 aa24.44■■□□□ 1.5
RAB40C-207ENST00000563109 E9PSI1 815 aa24.42■■□□□ 1.5
RAB40C-207ENST00000563109 EIF4A1P60842 406 aaKnown RBP24.42■■□□□ 1.5
RAB40C-207ENST00000563109 FANCIQ9NVI1 1328 aa24.41■■□□□ 1.5
RAB40C-207ENST00000563109 TSR2Q969E8 191 aaKnown RBP24.41■■□□□ 1.5
RAB40C-207ENST00000563109 SNRPA1P09661 255 aaKnown RBP24.4■■□□□ 1.5
RAB40C-207ENST00000563109 PROM2Q8N271 834 aa24.4■■□□□ 1.5
RAB40C-207ENST00000563109 YTHDC1Q96MU7 727 aaKnown RBP24.4■■□□□ 1.5
RAB40C-207ENST00000563109 TEX13AQ9BXU3 409 aaPredicted RBP24.4■■□□□ 1.5
RAB40C-207ENST00000563109 C4BP0C0L5 1744 aa24.4■■□□□ 1.5
RAB40C-207ENST00000563109 KCNQ4P56696 695 aa24.39■■□□□ 1.49
RAB40C-207ENST00000563109 SLC4A9Q96Q91 983 aa24.39■■□□□ 1.49
RAB40C-207ENST00000563109 LRRC4BQ9NT99 713 aa24.39■■□□□ 1.49
RAB40C-207ENST00000563109 ITPK1Q13572 414 aa24.38■■□□□ 1.49
RAB40C-207ENST00000563109 DNAJC10Q8IXB1 793 aa24.38■■□□□ 1.49
RAB40C-207ENST00000563109 SPINK5Q9NQ38 1064 aaPredicted RBP24.37■■□□□ 1.49
RAB40C-207ENST00000563109 STARD3NLO95772 234 aa24.36■■□□□ 1.49
RAB40C-207ENST00000563109 SLFN5Q08AF3 891 aa24.36■■□□□ 1.49
RAB40C-207ENST00000563109 GIGYF1O75420 1035 aaPredicted RBP24.35■■□□□ 1.49
RAB40C-207ENST00000563109 LINC00116Q8NCU8 138 aa24.35■■□□□ 1.49
RAB40C-207ENST00000563109 HOXB7P09629 217 aa24.34■■□□□ 1.49
RAB40C-207ENST00000563109 NBPF14Q5TI25 921 aa24.34■■□□□ 1.49
RAB40C-207ENST00000563109 CDCA7LQ96GN5 454 aa24.34■■□□□ 1.49
RAB40C-207ENST00000563109 AK7Q96M32 723 aa24.34■■□□□ 1.49
RAB40C-207ENST00000563109 CNTNAP4Q9C0A0 1308 aa24.34■■□□□ 1.49
RAB40C-207ENST00000563109 KRT24Q2M2I5 525 aa24.33■■□□□ 1.49
RAB40C-207ENST00000563109 STK32BQ9NY57 414 aa24.33■■□□□ 1.49
RAB40C-207ENST00000563109 SOS1Q07889 1333 aaPredicted RBP24.33■■□□□ 1.48
RAB40C-207ENST00000563109 PRAMEF22A3QJZ6 481 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms