RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ATG3Q9NT62 314 aa22.17■■□□□ 1.14
CLK3-207ENST00000562389 ASAP1Q9ULH1 1129 aa22.17■■□□□ 1.14
CLK3-207ENST00000562389 CCDC184Q52MB2 194 aa22.16■■□□□ 1.14
CLK3-207ENST00000562389 ANO8Q9HCE9 1232 aaPredicted RBP22.16■■□□□ 1.14
CLK3-207ENST00000562389 CCNL1Q9UK58 526 aaPredicted RBP22.16■■□□□ 1.14
CLK3-207ENST00000562389 HTATSF1O43719 755 aaKnown RBP22.15■■□□□ 1.14
CLK3-207ENST00000562389 IL17REQ8NFR9 667 aa22.15■■□□□ 1.14
CLK3-207ENST00000562389 ADAMTS8Q9UP79 889 aa22.15■■□□□ 1.14
CLK3-207ENST00000562389 NFE2L2Q16236 605 aa22.14■■□□□ 1.13
CLK3-207ENST00000562389 R3HDM1Q15032 1099 aaKnown RBP22.13■■□□□ 1.13
CLK3-207ENST00000562389 RTF1Q92541 710 aaKnown RBP22.13■■□□□ 1.13
CLK3-207ENST00000562389 QSER1Q2KHR3 1735 aa22.13■■□□□ 1.13
CLK3-207ENST00000562389 LOC102724428A0A0B4J2F2 783 aa22.12■■□□□ 1.13
CLK3-207ENST00000562389 HMGB2P26583 209 aaKnown RBP22.12■■□□□ 1.13
CLK3-207ENST00000562389 KCNQ4P56696 695 aa22.12■■□□□ 1.13
CLK3-207ENST00000562389 SIK1P57059 783 aa22.12■■□□□ 1.13
CLK3-207ENST00000562389 RUNDC1Q96C34 613 aa22.12■■□□□ 1.13
CLK3-207ENST00000562389 MRS2Q9HD23 443 aa22.12■■□□□ 1.13
CLK3-207ENST00000562389 STK32BQ9NY57 414 aa22.12■■□□□ 1.13
CLK3-207ENST00000562389 CICQ96RK0 1608 aaPredicted RBP22.12■■□□□ 1.13
CLK3-207ENST00000562389 UBR2Q8IWV8 1755 aa22.12■■□□□ 1.13
CLK3-207ENST00000562389 PSDA5PKW4 1024 aaPredicted RBP22.11■■□□□ 1.13
CLK3-207ENST00000562389 TEFQ10587 303 aa22.11■■□□□ 1.13
CLK3-207ENST00000562389 SLC15A2Q16348 729 aa22.11■■□□□ 1.13
CLK3-207ENST00000562389 TUBGCP6Q96RT7 1819 aa22.1■■□□□ 1.13
CLK3-207ENST00000562389 C4BP0C0L5 1744 aa22.1■■□□□ 1.13
CLK3-207ENST00000562389 CCDC146Q8IYE0 955 aa22.1■■□□□ 1.13
CLK3-207ENST00000562389 CASZ1Q86V15 1759 aa22.1■■□□□ 1.13
CLK3-207ENST00000562389 COL5A3P25940 1745 aaPredicted RBP22.09■■□□□ 1.13
CLK3-207ENST00000562389 ZNF827Q17R98 1081 aa22.09■■□□□ 1.13
CLK3-207ENST00000562389 MCM10Q7L590 875 aa22.09■■□□□ 1.13
CLK3-207ENST00000562389 AKT1S1Q96B36 256 aa22.09■■□□□ 1.13
CLK3-207ENST00000562389 KCPQ6ZWJ8 1503 aa22.08■■□□□ 1.13
CLK3-207ENST00000562389 TJP1Q07157 1748 aa22.07■■□□□ 1.12
CLK3-207ENST00000562389 ATP6V1AP38606 617 aa22.07■■□□□ 1.12
CLK3-207ENST00000562389 TMPOP42166 694 aaKnown RBP22.07■■□□□ 1.12
CLK3-207ENST00000562389 DCTN1Q14203 1278 aa22.07■■□□□ 1.12
CLK3-207ENST00000562389 PNISRQ8TF01 805 aaKnown RBP22.07■■□□□ 1.12
CLK3-207ENST00000562389 RBM42Q9BTD8 480 aaKnown RBP22.07■■□□□ 1.12
CLK3-207ENST00000562389 SLC4A9Q96Q91 983 aa22.06■■□□□ 1.12
CLK3-207ENST00000562389 RIPK4P57078 832 aa22.05■■□□□ 1.12
CLK3-207ENST00000562389 SLC39A6Q13433 755 aa22.05■■□□□ 1.12
CLK3-207ENST00000562389 ITPK1Q13572 414 aa22.05■■□□□ 1.12
CLK3-207ENST00000562389 PTCD1O75127 700 aaKnown RBP22.04■■□□□ 1.12
CLK3-207ENST00000562389 LMOD3Q0VAK6 560 aa22.04■■□□□ 1.12
CLK3-207ENST00000562389 LINC00116Q8NCU8 138 aa22.04■■□□□ 1.12
CLK3-207ENST00000562389 UBR3Q6ZT12 1888 aa22.04■■□□□ 1.12
CLK3-207ENST00000562389 TTC5Q8N0Z6 440 aa22.03■■□□□ 1.12
CLK3-207ENST00000562389 KDM3BQ7LBC6 1761 aa22.02■■□□□ 1.12
CLK3-207ENST00000562389 BTBD11A6QL63 1104 aa22.02■■□□□ 1.12
CLK3-207ENST00000562389 ZNF790Q6PG37 636 aa22.02■■□□□ 1.12
CLK3-207ENST00000562389 TFCP2L1Q9NZI6 479 aa22.01■■□□□ 1.11
CLK3-207ENST00000562389 RRP7AQ9Y3A4 280 aaKnown RBP22.01■■□□□ 1.11
CLK3-207ENST00000562389 LRP5O75197 1615 aa22.01■■□□□ 1.11
CLK3-207ENST00000562389 TAF7Q15545 349 aaPredicted RBP22■■□□□ 1.11
CLK3-207ENST00000562389 VSIG10Q8N0Z9 540 aa22■■□□□ 1.11
CLK3-207ENST00000562389 PNPLA7Q6ZV29 1317 aa22■■□□□ 1.11
CLK3-207ENST00000562389 NEUROD2Q15784 382 aa21.99■■□□□ 1.11
CLK3-207ENST00000562389 DIEXFQ68CQ4 756 aaKnown RBP21.99■■□□□ 1.11
CLK3-207ENST00000562389 AK7Q96M32 723 aa21.99■■□□□ 1.11
CLK3-207ENST00000562389 THUMPD2Q9BTF0 503 aaKnown RBP21.99■■□□□ 1.11
CLK3-207ENST00000562389 MYH14Q7Z406 1995 aaKnown RBP21.99■■□□□ 1.11
CLK3-207ENST00000562389 APAF1O14727 1248 aa21.98■■□□□ 1.11
CLK3-207ENST00000562389 CNTNAP4Q9C0A0 1308 aa21.98■■□□□ 1.11
CLK3-207ENST00000562389 HEG1Q9ULI3 1381 aa21.98■■□□□ 1.11
CLK3-207ENST00000562389 RC3H1Q5TC82 1133 aaKnown RBP21.97■■□□□ 1.11
CLK3-207ENST00000562389 ZNF496Q96IT1 587 aaPredicted RBP21.97■■□□□ 1.11
CLK3-207ENST00000562389 PDGFDQ9GZP0 370 aaPredicted RBP21.97■■□□□ 1.11
CLK3-207ENST00000562389 TRIM35Q9UPQ4 493 aa21.97■■□□□ 1.11
CLK3-207ENST00000562389 KCNQ3O43525 872 aa21.96■■□□□ 1.11
CLK3-207ENST00000562389 FMNL2Q96PY5 1086 aa21.96■■□□□ 1.11
CLK3-207ENST00000562389 CCER2I3L3R5 266 aa21.95■■□□□ 1.1
CLK3-207ENST00000562389 DNAJC10Q8IXB1 793 aa21.95■■□□□ 1.1
CLK3-207ENST00000562389 FLAD1Q8NFF5 587 aa21.95■■□□□ 1.1
CLK3-207ENST00000562389 SSFA2P28290 1259 aa21.94■■□□□ 1.1
CLK3-207ENST00000562389 COL24A1Q17RW2 1714 aa21.94■■□□□ 1.1
CLK3-207ENST00000562389 GNPATO15228 680 aa21.93■■□□□ 1.1
CLK3-207ENST00000562389 CRKLP46109 303 aaKnown RBP21.93■■□□□ 1.1
CLK3-207ENST00000562389 BABAM1Q9NWV8 329 aa21.93■■□□□ 1.1
CLK3-207ENST00000562389 CYP19A1P11511 503 aaPredicted RBP21.92■■□□□ 1.1
CLK3-207ENST00000562389 AMIGO3Q86WK7 504 aa21.92■■□□□ 1.1
CLK3-207ENST00000562389 COL23A1Q86Y22 540 aaPredicted RBP21.92■■□□□ 1.1
CLK3-207ENST00000562389 FAM9BQ8IZU0 186 aa21.92■■□□□ 1.1
CLK3-207ENST00000562389 SLC16A10Q8TF71 515 aa21.92■■□□□ 1.1
CLK3-207ENST00000562389 TEX13AQ9BXU3 409 aaPredicted RBP21.92■■□□□ 1.1
CLK3-207ENST00000562389 MIS18AQ9NYP9 233 aa21.92■■□□□ 1.1
CLK3-207ENST00000562389 LAMB4A4D0S4 1761 aa21.92■■□□□ 1.1
CLK3-207ENST00000562389 MTFR1LQ9H019 292 aa21.91■■□□□ 1.1
CLK3-207ENST00000562389 RTCBQ9Y3I0 505 aaKnown RBP21.91■■□□□ 1.1
CLK3-207ENST00000562389 C4AP0C0L4 1744 aa21.9■■□□□ 1.1
CLK3-207ENST00000562389 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.9■■□□□ 1.1
CLK3-207ENST00000562389 RPS6KA4O75676 772 aa21.9■■□□□ 1.1
CLK3-207ENST00000562389 ZBTB7AO95365 584 aa21.9■■□□□ 1.1
CLK3-207ENST00000562389 NCBP3Q53F19 620 aaKnown RBP21.9■■□□□ 1.1
CLK3-207ENST00000562389 SPON1Q9HCB6 807 aa21.9■■□□□ 1.1
CLK3-207ENST00000562389 PHF14O94880 888 aa21.89■■□□□ 1.09
CLK3-207ENST00000562389 ADRA2BP18089 450 aa21.89■■□□□ 1.09
CLK3-207ENST00000562389 INTS5Q6P9B9 1019 aaKnown RBP21.89■■□□□ 1.09
CLK3-207ENST00000562389 CCDC87Q9NVE4 849 aa21.89■■□□□ 1.09
CLK3-207ENST00000562389 TSPYL4Q9UJ04 414 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms