RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 ANO10Q9NW15 660 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 CA8P35219 290 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 GUCY1B3Q02153 619 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 FKBP4Q02790 459 aaKnown RBP eCLIP11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 KIF4BQ2VIQ3 1234 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 WDR78Q5VTH9 848 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 CABP1Q9NZU7 370 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 LRPPRCP42704 1394 aaKnown RBP11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 TBC1D9Q6ZT07 1266 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 ECM2O94769 699 aaPredicted RBP11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 RBM25P49756 843 aaKnown RBP11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 SYCP1Q15431 976 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 KLHL40Q2TBA0 621 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 MIS18AQ9NYP9 233 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 JAKMIP3Q5VZ66 844 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 EIF5P55010 431 aaKnown RBP11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 BICDL1Q6ZP65 573 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 GBP3Q9H0R5 595 aa11.94□□□□□ -0.5
GTF3C1-202ENST00000561623 TOP1P11387 765 aaKnown RBP11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 LMAN1P49257 510 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 SEPT7Q16181 437 aaKnown RBP11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 GAPVD1Q14C86 1478 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 ANKLE2Q86XL3 938 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 LUC7LQ9NQ29 371 aaKnown RBP11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 KIF5CO60282 957 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 DUSP27Q5VZP5 1158 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 CEP135Q66GS9 1140 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 KLHL10Q6JEL2 608 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 RAI14Q9P0K7 980 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 HCLS1P14317 486 aaPredicted RBP11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 RRS1Q15050 365 aaKnown RBP11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 TICAM2Q86XR7 235 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 MYL6BP14649 208 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 RFX1P22670 979 aa11.93□□□□□ -0.5
GTF3C1-202ENST00000561623 TMC6Q7Z403 805 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 PIBF1Q8WXW3 757 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 PRIMPOLQ96LW4 560 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 RNF187Q5TA31 235 aaPredicted RBP11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 CPLX3Q8WVH0 158 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 CNNM1Q9NRU3 951 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 TFIP11Q9UBB9 837 aaKnown RBP11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 GPRASP1Q5JY77 1395 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 CDK19Q9BWU1 502 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.92□□□□□ -0.53e-6■■■■□ 21.7
GTF3C1-202ENST00000561623 SCAND2PQ9GZW5 306 aaPredicted RBP11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 SEPT11Q9NVA2 429 aaKnown RBP11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 NBPF14Q5TI25 921 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 LRSAM1Q6UWE0 723 aa11.92□□□□□ -0.5
GTF3C1-202ENST00000561623 NSD3Q9BZ95 1437 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 IGSF3O75054 1194 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 KRT32Q14532 448 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 GIMAP6Q6P9H5 292 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 TIGD1Q96MW7 591 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 BIN2Q9UBW5 565 aaPredicted RBP11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 BIN1O00499 593 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 SNW1Q13573 536 aaKnown RBP11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 BBXQ8WY36 941 aaPredicted RBP11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 NOLC1Q14978 699 aaKnown RBP eCLIP11.91□□□□□ -0.59e-10■□□□□ 10.8
GTF3C1-202ENST00000561623 ZRSR2Q15696 482 aaKnown RBP11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 ANKRD30BQ9BXX2 1392 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 ATP2B2Q01814 1243 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 ZSWIM4Q9H7M6 989 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 SPINK5Q9NQ38 1064 aaPredicted RBP11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 DNA2P51530 1060 aa11.91□□□□□ -0.5
GTF3C1-202ENST00000561623 TRIM27P14373 513 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 ABTB2Q8N961 1025 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 NOL7Q9UMY1 257 aaKnown RBP11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 CDKL5O76039 1030 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 GJB2P29033 226 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 PRDM11Q9NQV5 511 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 NFE2L2Q16236 605 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 TXLNBQ8N3L3 684 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 TIAM1Q13009 1591 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 AFAP1Q8N556 730 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 TAF4BQ92750 862 aa11.9□□□□□ -0.5
GTF3C1-202ENST00000561623 PLEKHO1Q53GL0 409 aaPredicted RBP11.9□□□□□ -0.51
GTF3C1-202ENST00000561623 THEMISQ8N1K5 641 aaPredicted RBP11.9□□□□□ -0.51
GTF3C1-202ENST00000561623 LIMCH1Q9UPQ0 1083 aa11.9□□□□□ -0.51
GTF3C1-202ENST00000561623 ARHGAP5Q13017 1502 aa11.9□□□□□ -0.51
GTF3C1-202ENST00000561623 PLEKHH1Q9ULM0 1364 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 BMS1Q14692 1282 aaKnown RBP11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 C8orf34Q49A92 452 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC113Q9H0I3 377 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 PLEKHH2Q8IVE3 1493 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 RAB11FIP3O75154 756 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 SSBP05455 408 aaKnown RBP eCLIP11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 MAP9Q49MG5 647 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 KRT222Q8N1A0 295 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 ERICH3Q5RHP9 1530 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 STX6O43752 255 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 TSHZ3Q63HK5 1081 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 ISM2Q6H9L7 571 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 V9GYY5 206 aaPredicted RBP11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 MCM10Q7L590 875 aa11.89□□□□□ -0.51
GTF3C1-202ENST00000561623 SLC3A2P08195 630 aaKnown RBP11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 ZSCAN29Q8IWY8 852 aaPredicted RBP11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 FSIP1Q8NA03 581 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 ZBTB9Q96C00 473 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 C9orf84Q5VXU9 1444 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms