RNA–Protein interactions for RNA: ENST00000561348.1

HERC1-212, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-212ENST00000561348 RSPH6AQ9H0K4 717 aa13.46□□□□□ -0.25
HERC1-212ENST00000561348 ATF5Q9Y2D1 282 aaPredicted RBP13.46□□□□□ -0.25
HERC1-212ENST00000561348 KDM6AO15550 1401 aaPredicted RBP13.46□□□□□ -0.26
HERC1-212ENST00000561348 RNMTO43148 476 aaKnown RBP13.45□□□□□ -0.26
HERC1-212ENST00000561348 WDR43Q15061 677 aaKnown RBP eCLIP13.45□□□□□ -0.26
HERC1-212ENST00000561348 RTF1Q92541 710 aaKnown RBP13.45□□□□□ -0.26
HERC1-212ENST00000561348 ATG3Q9NT62 314 aa13.45□□□□□ -0.26
HERC1-212ENST00000561348 PPP1R1BQ9UD71 204 aaPredicted RBP13.45□□□□□ -0.26
HERC1-212ENST00000561348 MAPK8IP3Q9UPT6 1336 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 LOC102724428A0A0B4J2F2 783 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 GNAT3A8MTJ3 354 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 FCHSD2O94868 740 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 PHF14O94880 888 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 SIK1P57059 783 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 TEFQ10587 303 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 AK7Q96M32 723 aa13.44□□□□□ -0.26
HERC1-212ENST00000561348 PRKRIP1Q9H875 184 aaPredicted RBP13.44□□□□□ -0.26
HERC1-212ENST00000561348 SLC39A6Q13433 755 aa13.43□□□□□ -0.26
HERC1-212ENST00000561348 MAP3K5Q99683 1374 aa13.43□□□□□ -0.26
HERC1-212ENST00000561348 ANP32CO43423 234 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 SMIM5Q71RC9 77 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 MCM10Q7L590 875 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 CCDC146Q8IYE0 955 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 SLC52A2Q9HAB3 445 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 SPON1Q9HCB6 807 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 PLEKHG2Q9H7P9 1386 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 LY75O60449 1722 aa13.42□□□□□ -0.26
HERC1-212ENST00000561348 DCTN1Q14203 1278 aa13.41□□□□□ -0.26
HERC1-212ENST00000561348 NEUROD2Q15784 382 aa13.41□□□□□ -0.26
HERC1-212ENST00000561348 KLHL34Q8N239 644 aa13.41□□□□□ -0.26
HERC1-212ENST00000561348 AKT1S1Q96B36 256 aa13.41□□□□□ -0.26
HERC1-212ENST00000561348 PNNQ9H307 717 aaKnown RBP13.41□□□□□ -0.26
HERC1-212ENST00000561348 ITPK1Q13572 414 aa13.4□□□□□ -0.26
HERC1-212ENST00000561348 TTC5Q8N0Z6 440 aa13.4□□□□□ -0.26
HERC1-212ENST00000561348 LINC00116Q8NCU8 138 aa13.4□□□□□ -0.26
HERC1-212ENST00000561348 IL17REQ8NFR9 667 aa13.4□□□□□ -0.26
HERC1-212ENST00000561348 SCN11AQ9UI33 1791 aa13.4□□□□□ -0.26
HERC1-212ENST00000561348 VIRMAQ69YN4 1812 aaKnown RBP13.39□□□□□ -0.27
HERC1-212ENST00000561348 GNPATO15228 680 aa13.39□□□□□ -0.27
HERC1-212ENST00000561348 MSL1Q68DK7 614 aa13.39□□□□□ -0.27
HERC1-212ENST00000561348 RRP7AQ9Y3A4 280 aaKnown RBP13.39□□□□□ -0.27
HERC1-212ENST00000561348 PNPLA7Q6ZV29 1317 aa13.39□□□□□ -0.27
HERC1-212ENST00000561348 C5P01031 1676 aa13.38□□□□□ -0.27
HERC1-212ENST00000561348 SENP3-EIF4A1A0A087X0R7 540 aa13.38□□□□□ -0.27
HERC1-212ENST00000561348 BTBD11A6QL63 1104 aa13.37□□□□□ -0.27
HERC1-212ENST00000561348 HMGB2P26583 209 aaKnown RBP13.37□□□□□ -0.27
HERC1-212ENST00000561348 COL23A1Q86Y22 540 aaPredicted RBP13.37□□□□□ -0.27
HERC1-212ENST00000561348 PAPPAQ13219 1627 aa13.36□□□□□ -0.27
HERC1-212ENST00000561348 NFE2L2Q16236 605 aa13.36□□□□□ -0.27
HERC1-212ENST00000561348 SLC4A9Q96Q91 983 aa13.36□□□□□ -0.27
HERC1-212ENST00000561348 THUMPD2Q9BTF0 503 aaKnown RBP13.36□□□□□ -0.27
HERC1-212ENST00000561348 MTFR1LQ9H019 292 aa13.36□□□□□ -0.27
HERC1-212ENST00000561348 MIS18AQ9NYP9 233 aa13.36□□□□□ -0.27
HERC1-212ENST00000561348 ADAMTS8Q9UP79 889 aa13.36□□□□□ -0.27
HERC1-212ENST00000561348 TAF1LQ8IZX4 1826 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.35□□□□□ -0.27
HERC1-212ENST00000561348 RIPK4P57078 832 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 CCDC184Q52MB2 194 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 DNAJC10Q8IXB1 793 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 ARXQ96QS3 562 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 PLEKHF1Q96S99 279 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 MRS2Q9HD23 443 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 RTCBQ9Y3I0 505 aaKnown RBP13.35□□□□□ -0.27
HERC1-212ENST00000561348 ZNF330Q9Y3S2 320 aaPredicted RBP13.35□□□□□ -0.27
HERC1-212ENST00000561348 C4BP0C0L5 1744 aa13.35□□□□□ -0.27
HERC1-212ENST00000561348 POLD1P28340 1107 aa13.34□□□□□ -0.27
HERC1-212ENST00000561348 TUBGCP6Q96RT7 1819 aa13.34□□□□□ -0.27
HERC1-212ENST00000561348 KCNQ3O43525 872 aa13.33□□□□□ -0.28
HERC1-212ENST00000561348 CRKLP46109 303 aaKnown RBP13.33□□□□□ -0.28
HERC1-212ENST00000561348 TRAPPC3LQ5T215 181 aa13.33□□□□□ -0.28
HERC1-212ENST00000561348 ZNF790Q6PG37 636 aa13.33□□□□□ -0.28
HERC1-212ENST00000561348 AMIGO3Q86WK7 504 aa13.33□□□□□ -0.28
HERC1-212ENST00000561348 FLAD1Q8NFF5 587 aa13.33□□□□□ -0.28
HERC1-212ENST00000561348 LAS1LQ9Y4W2 734 aaKnown RBP13.33□□□□□ -0.28
HERC1-212ENST00000561348 CASZ1Q86V15 1759 aa13.32□□□□□ -0.28
HERC1-212ENST00000561348 CANXP27824 592 aaKnown RBP13.32□□□□□ -0.28
HERC1-212ENST00000561348 RFC4P35249 363 aa13.32□□□□□ -0.28
HERC1-212ENST00000561348 RUNDC1Q96C34 613 aa13.32□□□□□ -0.28
HERC1-212ENST00000561348 ZNF496Q96IT1 587 aaPredicted RBP13.32□□□□□ -0.28
HERC1-212ENST00000561348 DLG5Q8TDM6 1919 aa13.31□□□□□ -0.28
HERC1-212ENST00000561348 SRCAPQ6ZRS2 3230 aa13.31□□□□□ -0.28
HERC1-212ENST00000561348 HTATSF1O43719 755 aaKnown RBP13.31□□□□□ -0.28
HERC1-212ENST00000561348 TMPOP42166 694 aaKnown RBP13.31□□□□□ -0.28
HERC1-212ENST00000561348 TAF7Q15545 349 aaPredicted RBP13.31□□□□□ -0.28
HERC1-212ENST00000561348 SLC16A10Q8TF71 515 aa13.31□□□□□ -0.28
HERC1-212ENST00000561348 FMNL2Q96PY5 1086 aa13.31□□□□□ -0.28
HERC1-212ENST00000561348 LRP5O75197 1615 aa13.31□□□□□ -0.28
HERC1-212ENST00000561348 SSFA2P28290 1259 aa13.3□□□□□ -0.28
HERC1-212ENST00000561348 PTGER2P43116 358 aa13.3□□□□□ -0.28
HERC1-212ENST00000561348 NPM2Q86SE8 214 aaKnown RBP13.3□□□□□ -0.28
HERC1-212ENST00000561348 CCDC87Q9NVE4 849 aa13.3□□□□□ -0.28
HERC1-212ENST00000561348 MRC1P22897 1456 aa13.29□□□□□ -0.28
HERC1-212ENST00000561348 APAF1O14727 1248 aa13.29□□□□□ -0.28
HERC1-212ENST00000561348 RPS6KA4O75676 772 aa13.29□□□□□ -0.28
HERC1-212ENST00000561348 STARD3NLO95772 234 aa13.29□□□□□ -0.28
HERC1-212ENST00000561348 FAM9BQ8IZU0 186 aa13.29□□□□□ -0.28
HERC1-212ENST00000561348 ARHGEF1Q92888 912 aaKnown RBP13.29□□□□□ -0.28
HERC1-212ENST00000561348 CNTNAP4Q9C0A0 1308 aa13.29□□□□□ -0.28
HERC1-212ENST00000561348 CEMIPQ8WUJ3 1361 aa13.29□□□□□ -0.28
HERC1-212ENST00000561348 CYP19A1P11511 503 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms