RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 STARD3NLO95772 234 aa13.95□□□□□ -0.18
TPM1-229ENST00000561242 FMNL2Q96PY5 1086 aa13.95□□□□□ -0.18
TPM1-229ENST00000561242 CAMKK2Q96RR4 588 aa13.95□□□□□ -0.18
TPM1-229ENST00000561242 TSPYL4Q9UJ04 414 aa13.95□□□□□ -0.18
TPM1-229ENST00000561242 PALLDQ8WX93 1383 aa13.95□□□□□ -0.18
TPM1-229ENST00000561242 COL3A1P02461 1466 aaPredicted RBP13.94□□□□□ -0.18
TPM1-229ENST00000561242 LOC102724428A0A0B4J2F2 783 aa13.94□□□□□ -0.18
TPM1-229ENST00000561242 SIK1P57059 783 aa13.94□□□□□ -0.18
TPM1-229ENST00000561242 FLAD1Q8NFF5 587 aa13.94□□□□□ -0.18
TPM1-229ENST00000561242 IL17REQ8NFR9 667 aa13.94□□□□□ -0.18
TPM1-229ENST00000561242 ARXQ96QS3 562 aa13.94□□□□□ -0.18
TPM1-229ENST00000561242 ASAP1Q9ULH1 1129 aa13.94□□□□□ -0.18
TPM1-229ENST00000561242 DCTN1Q14203 1278 aa13.93□□□□□ -0.18
TPM1-229ENST00000561242 ATG3Q9NT62 314 aa13.93□□□□□ -0.18
TPM1-229ENST00000561242 GNAI1P63096 354 aa13.92□□□□□ -0.18
TPM1-229ENST00000561242 CCDC184Q52MB2 194 aa13.92□□□□□ -0.18
TPM1-229ENST00000561242 LRRC37A3O60309 1634 aa13.92□□□□□ -0.18
TPM1-229ENST00000561242 SLC39A6Q13433 755 aa13.91□□□□□ -0.18
TPM1-229ENST00000561242 ZNF790Q6PG37 636 aa13.91□□□□□ -0.18
TPM1-229ENST00000561242 BABAM1Q9NWV8 329 aa13.91□□□□□ -0.18
TPM1-229ENST00000561242 SNRPA1P09661 255 aaKnown RBP13.9□□□□□ -0.18
TPM1-229ENST00000561242 PTF1AQ7RTS3 328 aa13.9□□□□□ -0.18
TPM1-229ENST00000561242 RTCBQ9Y3I0 505 aaKnown RBP13.9□□□□□ -0.18
TPM1-229ENST00000561242 R3HDM1Q15032 1099 aaKnown RBP13.89□□□□□ -0.19
TPM1-229ENST00000561242 VSIG10Q8N0Z9 540 aa13.89□□□□□ -0.19
TPM1-229ENST00000561242 MYH16Q9H6N6 1097 aa13.89□□□□□ -0.19
TPM1-229ENST00000561242 ZNF330Q9Y3S2 320 aaPredicted RBP13.89□□□□□ -0.19
TPM1-229ENST00000561242 SLC15A2Q16348 729 aa13.88□□□□□ -0.19
TPM1-229ENST00000561242 TRAPPC3LQ5T215 181 aa13.88□□□□□ -0.19
TPM1-229ENST00000561242 GNPATO15228 680 aa13.87□□□□□ -0.19
TPM1-229ENST00000561242 RFC4P35249 363 aa13.87□□□□□ -0.19
TPM1-229ENST00000561242 NCBP3Q53F19 620 aaKnown RBP13.87□□□□□ -0.19
TPM1-229ENST00000561242 THUMPD2Q9BTF0 503 aaKnown RBP13.87□□□□□ -0.19
TPM1-229ENST00000561242 MIS18AQ9NYP9 233 aa13.87□□□□□ -0.19
TPM1-229ENST00000561242 A0A087WZG4 1122 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 ZPR1O75312 459 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 PHF14O94880 888 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 POLD1P28340 1107 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 KCNQ4P56696 695 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 GOLGA2Q08379 1002 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 CCDC27Q2M243 656 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 WDR63Q8IWG1 891 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 CFAP44Q96MT7 982 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 IFT57Q9NWB7 429 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 PPP1R1BQ9UD71 204 aaPredicted RBP13.86□□□□□ -0.19
TPM1-229ENST00000561242 RGPD2P0DJD1 1756 aa13.86□□□□□ -0.19
TPM1-229ENST00000561242 KDM6AO15550 1401 aaPredicted RBP13.85□□□□□ -0.19
TPM1-229ENST00000561242 SENP3-EIF4A1A0A087X0R7 540 aa13.85□□□□□ -0.19
TPM1-229ENST00000561242 PSDA5PKW4 1024 aaPredicted RBP13.85□□□□□ -0.19
TPM1-229ENST00000561242 NPHP1O15259 732 aa13.85□□□□□ -0.19
TPM1-229ENST00000561242 BRWD3Q6RI45 1802 aa13.85□□□□□ -0.19
TPM1-229ENST00000561242 EIF2S2P20042 333 aaKnown RBP13.84□□□□□ -0.19
TPM1-229ENST00000561242 CANXP27824 592 aaKnown RBP13.84□□□□□ -0.19
TPM1-229ENST00000561242 HNRNPUQ00839 825 aaKnown RBP eCLIP13.84□□□□□ -0.19
TPM1-229ENST00000561242 RC3H1Q5TC82 1133 aaKnown RBP13.84□□□□□ -0.19
TPM1-229ENST00000561242 WWC1Q8IX03 1113 aa13.84□□□□□ -0.19
TPM1-229ENST00000561242 CCDC87Q9NVE4 849 aa13.84□□□□□ -0.19
TPM1-229ENST00000561242 KAT6BQ8WYB5 2073 aa13.84□□□□□ -0.19
TPM1-229ENST00000561242 RGPD1P0DJD0 1748 aa13.84□□□□□ -0.19
TPM1-229ENST00000561242 CEMIPQ8WUJ3 1361 aa13.83□□□□□ -0.19
TPM1-229ENST00000561242 DCAF8L1A6NGE4 600 aa13.83□□□□□ -0.2
TPM1-229ENST00000561242 DNAJC10Q8IXB1 793 aa13.83□□□□□ -0.2
TPM1-229ENST00000561242 PROM2Q8N271 834 aa13.83□□□□□ -0.2
TPM1-229ENST00000561242 SLC16A10Q8TF71 515 aa13.83□□□□□ -0.2
TPM1-229ENST00000561242 ZNF496Q96IT1 587 aaPredicted RBP13.83□□□□□ -0.2
TPM1-229ENST00000561242 TRIM35Q9UPQ4 493 aa13.83□□□□□ -0.2
TPM1-229ENST00000561242 ADRA2BP18089 450 aa13.82□□□□□ -0.2
TPM1-229ENST00000561242 SSFA2P28290 1259 aa13.82□□□□□ -0.2
TPM1-229ENST00000561242 CRKLP46109 303 aaKnown RBP13.82□□□□□ -0.2
TPM1-229ENST00000561242 STK31Q9BXU1 1019 aa13.82□□□□□ -0.2
TPM1-229ENST00000561242 SPON1Q9HCB6 807 aa13.82□□□□□ -0.2
TPM1-229ENST00000561242 LRRC4BQ9NT99 713 aa13.82□□□□□ -0.2
TPM1-229ENST00000561242 IL16Q14005 1332 aa13.82□□□□□ -0.2
TPM1-229ENST00000561242 CHL1O00533 1208 aa13.81□□□□□ -0.2
TPM1-229ENST00000561242 RPS6KA4O75676 772 aa13.81□□□□□ -0.2
TPM1-229ENST00000561242 HEG1Q9ULI3 1381 aa13.81□□□□□ -0.2
TPM1-229ENST00000561242 PKD1L3Q7Z443 1732 aa13.81□□□□□ -0.2
TPM1-229ENST00000561242 WNK3Q9BYP7 1800 aa13.8□□□□□ -0.2
TPM1-229ENST00000561242 EIF4A1P60842 406 aaKnown RBP13.8□□□□□ -0.2
TPM1-229ENST00000561242 KIF6Q6ZMV9 814 aa13.8□□□□□ -0.2
TPM1-229ENST00000561242 LINC00116Q8NCU8 138 aa13.8□□□□□ -0.2
TPM1-229ENST00000561242 ZNF652Q9Y2D9 606 aa13.8□□□□□ -0.2
TPM1-229ENST00000561242 CNTNAP4Q9C0A0 1308 aa13.8□□□□□ -0.2
TPM1-229ENST00000561242 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.79□□□□□ -0.2
TPM1-229ENST00000561242 E9PSI1 815 aa13.79□□□□□ -0.2
TPM1-229ENST00000561242 ITPK1Q13572 414 aa13.79□□□□□ -0.2
TPM1-229ENST00000561242 HDGFL1Q5TGJ6 251 aa13.79□□□□□ -0.2
TPM1-229ENST00000561242 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
TPM1-229ENST00000561242 NLGN1Q8N2Q7 840 aa13.79□□□□□ -0.2
TPM1-229ENST00000561242 NHSQ6T4R5 1651 aa13.79□□□□□ -0.2
TPM1-229ENST00000561242 ELL2O00472 640 aaPredicted RBP13.78□□□□□ -0.2
TPM1-229ENST00000561242 KCNQ3O43525 872 aa13.78□□□□□ -0.2
TPM1-229ENST00000561242 CYP19A1P11511 503 aaPredicted RBP13.78□□□□□ -0.2
TPM1-229ENST00000561242 AKT1S1Q96B36 256 aa13.78□□□□□ -0.2
TPM1-229ENST00000561242 MTFR1LQ9H019 292 aa13.78□□□□□ -0.2
TPM1-229ENST00000561242 MBIPQ9NS73 344 aa13.78□□□□□ -0.2
TPM1-229ENST00000561242 GIGYF1O75420 1035 aaPredicted RBP13.77□□□□□ -0.21
TPM1-229ENST00000561242 ZBTB7AO95365 584 aa13.77□□□□□ -0.21
TPM1-229ENST00000561242 HOXB7P09629 217 aa13.77□□□□□ -0.21
TPM1-229ENST00000561242 MYL6BP14649 208 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms