RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 TEFQ10587 303 aa11.34□□□□□ -0.59
USP3-217ENST00000560070 SLC15A2Q16348 729 aa11.34□□□□□ -0.59
USP3-217ENST00000560070 PLEKHF1Q96S99 279 aa11.34□□□□□ -0.59
USP3-217ENST00000560070 PDGFDQ9GZP0 370 aaPredicted RBP11.34□□□□□ -0.59
USP3-217ENST00000560070 PNNQ9H307 717 aaKnown RBP11.34□□□□□ -0.59
USP3-217ENST00000560070 SLC52A2Q9HAB3 445 aa11.34□□□□□ -0.59
USP3-217ENST00000560070 TFCP2L1Q9NZI6 479 aa11.34□□□□□ -0.59
USP3-217ENST00000560070 RRP7AQ9Y3A4 280 aaKnown RBP11.34□□□□□ -0.59
USP3-217ENST00000560070 LOC102724428A0A0B4J2F2 783 aa11.33□□□□□ -0.6
USP3-217ENST00000560070 SIK1P57059 783 aa11.33□□□□□ -0.6
USP3-217ENST00000560070 ZNF827Q17R98 1081 aa11.33□□□□□ -0.6
USP3-217ENST00000560070 MAPK8IP3Q9UPT6 1336 aa11.33□□□□□ -0.6
USP3-217ENST00000560070 ITPK1Q13572 414 aa11.32□□□□□ -0.6
USP3-217ENST00000560070 NFE2L2Q16236 605 aa11.32□□□□□ -0.6
USP3-217ENST00000560070 MRS2Q9HD23 443 aa11.32□□□□□ -0.6
USP3-217ENST00000560070 MIS18AQ9NYP9 233 aa11.32□□□□□ -0.6
USP3-217ENST00000560070 KDM6AO15550 1401 aaPredicted RBP11.32□□□□□ -0.6
USP3-217ENST00000560070 MAP3K5Q99683 1374 aa11.31□□□□□ -0.6
USP3-217ENST00000560070 ZBTB7AO95365 584 aa11.31□□□□□ -0.6
USP3-217ENST00000560070 RIPK4P57078 832 aa11.31□□□□□ -0.6
USP3-217ENST00000560070 AKT1S1Q96B36 256 aa11.31□□□□□ -0.6
USP3-217ENST00000560070 SLC4A9Q96Q91 983 aa11.31□□□□□ -0.6
USP3-217ENST00000560070 THUMPD2Q9BTF0 503 aaKnown RBP11.31□□□□□ -0.6
USP3-217ENST00000560070 ATF5Q9Y2D1 282 aaPredicted RBP11.31□□□□□ -0.6
USP3-217ENST00000560070 EP400Q96L91 3159 aa11.3□□□□□ -0.6
USP3-217ENST00000560070 BTBD11A6QL63 1104 aa11.3□□□□□ -0.6
USP3-217ENST00000560070 KCNQ3O43525 872 aa11.3□□□□□ -0.6
USP3-217ENST00000560070 PHF14O94880 888 aa11.3□□□□□ -0.6
USP3-217ENST00000560070 LINC00116Q8NCU8 138 aa11.3□□□□□ -0.6
USP3-217ENST00000560070 RUNDC1Q96C34 613 aa11.3□□□□□ -0.6
USP3-217ENST00000560070 TMPOP42166 694 aaKnown RBP11.29□□□□□ -0.6
USP3-217ENST00000560070 FAM9BQ8IZU0 186 aa11.29□□□□□ -0.6
USP3-217ENST00000560070 TTC5Q8N0Z6 440 aa11.29□□□□□ -0.6
USP3-217ENST00000560070 AK7Q96M32 723 aa11.29□□□□□ -0.6
USP3-217ENST00000560070 PLEKHG2Q9H7P9 1386 aa11.28□□□□□ -0.6
USP3-217ENST00000560070 HTATSF1O43719 755 aaKnown RBP11.28□□□□□ -0.6
USP3-217ENST00000560070 DNAJC10Q8IXB1 793 aa11.28□□□□□ -0.6
USP3-217ENST00000560070 SALL2Q9Y467 1007 aaPredicted RBP11.28□□□□□ -0.6
USP3-217ENST00000560070 LAS1LQ9Y4W2 734 aaKnown RBP11.28□□□□□ -0.6
USP3-217ENST00000560070 APAF1O14727 1248 aa11.27□□□□□ -0.61
USP3-217ENST00000560070 GNPATO15228 680 aa11.27□□□□□ -0.61
USP3-217ENST00000560070 TAF7Q15545 349 aaPredicted RBP11.27□□□□□ -0.61
USP3-217ENST00000560070 AMIGO3Q86WK7 504 aa11.27□□□□□ -0.61
USP3-217ENST00000560070 COL23A1Q86Y22 540 aaPredicted RBP11.27□□□□□ -0.61
USP3-217ENST00000560070 PNISRQ8TF01 805 aaKnown RBP11.27□□□□□ -0.61
USP3-217ENST00000560070 RGPD1P0DJD0 1748 aa11.26□□□□□ -0.61
USP3-217ENST00000560070 MSL1Q68DK7 614 aa11.26□□□□□ -0.61
USP3-217ENST00000560070 ZNF790Q6PG37 636 aa11.26□□□□□ -0.61
USP3-217ENST00000560070 ZNF496Q96IT1 587 aaPredicted RBP11.26□□□□□ -0.61
USP3-217ENST00000560070 SPON1Q9HCB6 807 aa11.26□□□□□ -0.61
USP3-217ENST00000560070 PNPLA7Q6ZV29 1317 aa11.26□□□□□ -0.61
USP3-217ENST00000560070 WNK3Q9BYP7 1800 aa11.25□□□□□ -0.61
USP3-217ENST00000560070 DIEXFQ68CQ4 756 aaKnown RBP11.25□□□□□ -0.61
USP3-217ENST00000560070 TNS1Q9HBL0 1735 aaKnown RBP11.24□□□□□ -0.61
USP3-217ENST00000560070 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.24□□□□□ -0.61
USP3-217ENST00000560070 PRAMEF22A3QJZ6 481 aa11.24□□□□□ -0.61
USP3-217ENST00000560070 CANXP27824 592 aaKnown RBP11.24□□□□□ -0.61
USP3-217ENST00000560070 CRKLP46109 303 aaKnown RBP11.24□□□□□ -0.61
USP3-217ENST00000560070 FMNL2Q96PY5 1086 aa11.24□□□□□ -0.61
USP3-217ENST00000560070 PPP1R1BQ9UD71 204 aaPredicted RBP11.24□□□□□ -0.61
USP3-217ENST00000560070 TRIM35Q9UPQ4 493 aa11.24□□□□□ -0.61
USP3-217ENST00000560070 RTCBQ9Y3I0 505 aaKnown RBP11.24□□□□□ -0.61
USP3-217ENST00000560070 NHSQ6T4R5 1651 aa11.24□□□□□ -0.61
USP3-217ENST00000560070 CYP19A1P11511 503 aaPredicted RBP11.23□□□□□ -0.61
USP3-217ENST00000560070 HMGB2P26583 209 aaKnown RBP11.23□□□□□ -0.61
USP3-217ENST00000560070 TRAPPC3LQ5T215 181 aa11.23□□□□□ -0.61
USP3-217ENST00000560070 INTS5Q6P9B9 1019 aaKnown RBP11.23□□□□□ -0.61
USP3-217ENST00000560070 ARXQ96QS3 562 aa11.23□□□□□ -0.61
USP3-217ENST00000560070 ZNF330Q9Y3S2 320 aaPredicted RBP11.23□□□□□ -0.61
USP3-217ENST00000560070 USP16Q9Y5T5 823 aa11.23□□□□□ -0.61
USP3-217ENST00000560070 CEMIPQ8WUJ3 1361 aa11.23□□□□□ -0.61
USP3-217ENST00000560070 RPS6KA4O75676 772 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 A1BGP04217 495 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 PIP4K2AP48426 406 aaPredicted RBP11.22□□□□□ -0.61
USP3-217ENST00000560070 LMOD3Q0VAK6 560 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 RC3H1Q5TC82 1133 aaKnown RBP11.22□□□□□ -0.61
USP3-217ENST00000560070 PKD1L3Q7Z443 1732 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 MIER1Q8N108 512 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 FLAD1Q8NFF5 587 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 ARHGEF1Q92888 912 aaKnown RBP11.22□□□□□ -0.61
USP3-217ENST00000560070 MTFR1LQ9H019 292 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 TSPYL4Q9UJ04 414 aa11.22□□□□□ -0.61
USP3-217ENST00000560070 DOT1LQ8TEK3 1739 aa11.21□□□□□ -0.61
USP3-217ENST00000560070 SHANK3Q9BYB0 1731 aa11.21□□□□□ -0.61
USP3-217ENST00000560070 STARD3NLO95772 234 aa11.21□□□□□ -0.61
USP3-217ENST00000560070 KLHL34Q8N239 644 aa11.21□□□□□ -0.61
USP3-217ENST00000560070 CCDC87Q9NVE4 849 aa11.21□□□□□ -0.61
USP3-217ENST00000560070 SNRPA1P09661 255 aaKnown RBP11.2□□□□□ -0.62
USP3-217ENST00000560070 SSFA2P28290 1259 aa11.2□□□□□ -0.62
USP3-217ENST00000560070 RFC4P35249 363 aa11.2□□□□□ -0.62
USP3-217ENST00000560070 VSIG10Q8N0Z9 540 aa11.2□□□□□ -0.62
USP3-217ENST00000560070 NGEFQ8N5V2 710 aa11.2□□□□□ -0.62
USP3-217ENST00000560070 SLC16A10Q8TF71 515 aa11.2□□□□□ -0.62
USP3-217ENST00000560070 TEX13AQ9BXU3 409 aaPredicted RBP11.2□□□□□ -0.62
USP3-217ENST00000560070 SRP68Q9UHB9 627 aaKnown RBP11.2□□□□□ -0.62
USP3-217ENST00000560070 HEG1Q9ULI3 1381 aa11.19□□□□□ -0.62
USP3-217ENST00000560070 BTAF1O14981 1849 aa11.19□□□□□ -0.62
USP3-217ENST00000560070 POLD1P28340 1107 aa11.19□□□□□ -0.62
USP3-217ENST00000560070 DSG3P32926 999 aa11.19□□□□□ -0.62
USP3-217ENST00000560070 PTGER2P43116 358 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms