RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 ATG3Q9NT62 314 aa5.82□□□□□ -1.48
SNX1-205ENST00000559339 ASAP1Q9ULH1 1129 aa5.82□□□□□ -1.48
SNX1-205ENST00000559339 RGPD2P0DJD1 1756 aa5.82□□□□□ -1.48
SNX1-205ENST00000559339 SBF2Q86WG5 1849 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 GNAT3A8MTJ3 354 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 ZBTB7AO95365 584 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 ATXN8OSP0DMR3 200 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 POLD1P28340 1107 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 PRKAR2BP31323 418 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 TEFQ10587 303 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 ZNF827Q17R98 1081 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 MTHFSDQ2M296 383 aaKnown RBP5.81□□□□□ -1.48
SNX1-205ENST00000559339 TTC5Q8N0Z6 440 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 RBM42Q9BTD8 480 aaKnown RBP5.81□□□□□ -1.48
SNX1-205ENST00000559339 SLC52A2Q9HAB3 445 aa5.81□□□□□ -1.48
SNX1-205ENST00000559339 PKD1L3Q7Z443 1732 aa5.8□□□□□ -1.48
SNX1-205ENST00000559339 RREB1Q92766 1687 aa5.8□□□□□ -1.48
SNX1-205ENST00000559339 RNMTO43148 476 aaKnown RBP5.8□□□□□ -1.48
SNX1-205ENST00000559339 PTCD1O75127 700 aaKnown RBP5.8□□□□□ -1.48
SNX1-205ENST00000559339 SSFA2P28290 1259 aa5.8□□□□□ -1.48
SNX1-205ENST00000559339 PDGFDQ9GZP0 370 aaPredicted RBP5.8□□□□□ -1.48
SNX1-205ENST00000559339 RSPH6AQ9H0K4 717 aa5.8□□□□□ -1.48
SNX1-205ENST00000559339 LGR6Q9HBX8 967 aa5.8□□□□□ -1.48
SNX1-205ENST00000559339 ATF5Q9Y2D1 282 aaPredicted RBP5.8□□□□□ -1.48
SNX1-205ENST00000559339 BTAF1O14981 1849 aa5.8□□□□□ -1.48
SNX1-205ENST00000559339 MAP3K5Q99683 1374 aa5.8□□□□□ -1.48
SNX1-205ENST00000559339 NUP188Q5SRE5 1749 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 DOT1LQ8TEK3 1739 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 PNPLA7Q6ZV29 1317 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 MYBBP1AQ9BQG0 1328 aaKnown RBP5.79□□□□□ -1.48
SNX1-205ENST00000559339 MAPK8IP3Q9UPT6 1336 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 ZNF316A6NFI3 1004 aaPredicted RBP5.79□□□□□ -1.48
SNX1-205ENST00000559339 GNPATO15228 680 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 PHF14O94880 888 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 WDR43Q15061 677 aaKnown RBP eCLIP5.79□□□□□ -1.48
SNX1-205ENST00000559339 TRAPPC3LQ5T215 181 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 PHACTR3Q96KR7 559 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 ARXQ96QS3 562 aa5.79□□□□□ -1.48
SNX1-205ENST00000559339 RTCBQ9Y3I0 505 aaKnown RBP5.79□□□□□ -1.48
SNX1-205ENST00000559339 KDM6AO15550 1401 aaPredicted RBP5.79□□□□□ -1.48
SNX1-205ENST00000559339 COL3A1P02461 1466 aaPredicted RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 BTBD11A6QL63 1104 aa5.78□□□□□ -1.48
SNX1-205ENST00000559339 HTATSF1O43719 755 aaKnown RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 STARD3NLO95772 234 aa5.78□□□□□ -1.48
SNX1-205ENST00000559339 RC3H1Q5TC82 1133 aaKnown RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 NPM2Q86SE8 214 aaKnown RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 COL23A1Q86Y22 540 aaPredicted RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 LINC00116Q8NCU8 138 aa5.78□□□□□ -1.48
SNX1-205ENST00000559339 TEX13AQ9BXU3 409 aaPredicted RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 SHANK3Q9BYB0 1731 aa5.78□□□□□ -1.48
SNX1-205ENST00000559339 RNF39Q9H2S5 420 aa5.78□□□□□ -1.48
SNX1-205ENST00000559339 PRKRIP1Q9H875 184 aaPredicted RBP5.78□□□□□ -1.48
SNX1-205ENST00000559339 ANP32CO43423 234 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 RFC4P35249 363 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 PTGER2P43116 358 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 LMOD3Q0VAK6 560 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 SLC39A6Q13433 755 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 ITPK1Q13572 414 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 ZNF790Q6PG37 636 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 VSIG10Q8N0Z9 540 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 KLHL34Q8N239 644 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 IL17REQ8NFR9 667 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 LRP5O75197 1615 aa5.77□□□□□ -1.49
SNX1-205ENST00000559339 CNTNAP4Q9C0A0 1308 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 ZPR1O75312 459 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 RPS6KA4O75676 772 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 CRKLP46109 303 aaKnown RBP5.76□□□□□ -1.49
SNX1-205ENST00000559339 TAF7Q15545 349 aaPredicted RBP5.76□□□□□ -1.49
SNX1-205ENST00000559339 MSL1Q68DK7 614 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 MCM10Q7L590 875 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 NLGN1Q8N2Q7 840 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 PNISRQ8TF01 805 aaKnown RBP5.76□□□□□ -1.49
SNX1-205ENST00000559339 FMNL2Q96PY5 1086 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 PLEKHF1Q96S99 279 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 SGIP1Q9BQI5 828 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 SYT17Q9BSW7 474 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 FHDC1Q9C0D6 1143 aaPredicted RBP5.76□□□□□ -1.49
SNX1-205ENST00000559339 CEMIPQ8WUJ3 1361 aa5.76□□□□□ -1.49
SNX1-205ENST00000559339 PAPPAQ13219 1627 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 RIPK4P57078 832 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 C1QBPQ07021 282 aaKnown RBP5.75□□□□□ -1.49
SNX1-205ENST00000559339 NFE2L2Q16236 605 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 DNAJC10Q8IXB1 793 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 ARHGEF1Q92888 912 aaKnown RBP5.75□□□□□ -1.49
SNX1-205ENST00000559339 RUNDC1Q96C34 613 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 ZNF496Q96IT1 587 aaPredicted RBP5.75□□□□□ -1.49
SNX1-205ENST00000559339 SLC4A9Q96Q91 983 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 CCDC87Q9NVE4 849 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 MRC1P22897 1456 aa5.75□□□□□ -1.49
SNX1-205ENST00000559339 LY75O60449 1722 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 TOGARAM1Q9Y4F4 1720 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 A0A087WZG4 1122 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 MMP10P09238 476 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 SNRPA1P09661 255 aaKnown RBP5.74□□□□□ -1.49
SNX1-205ENST00000559339 CYP19A1P11511 503 aaPredicted RBP5.74□□□□□ -1.49
SNX1-205ENST00000559339 DCTN1Q14203 1278 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 ADAMTS8Q9UP79 889 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 ZNF330Q9Y3S2 320 aaPredicted RBP5.74□□□□□ -1.49
SNX1-205ENST00000559339 CD2APQ9Y5K6 639 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms