RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 TMF1P82094 1093 aa19.18■□□□□ 0.66
TMEM260-215ENST00000557626 NLGN1Q8N2Q7 840 aa19.18■□□□□ 0.66
TMEM260-215ENST00000557626 LINC00116Q8NCU8 138 aa19.18■□□□□ 0.66
TMEM260-215ENST00000557626 KTN1Q86UP2 1357 aaKnown RBP19.18■□□□□ 0.66
TMEM260-215ENST00000557626 POTECB2RU33 542 aa19.17■□□□□ 0.66
TMEM260-215ENST00000557626 LMNB1P20700 586 aa19.17■□□□□ 0.66
TMEM260-215ENST00000557626 PARP3Q9Y6F1 533 aa19.17■□□□□ 0.66
TMEM260-215ENST00000557626 USP31Q70CQ4 1352 aa19.17■□□□□ 0.66
TMEM260-215ENST00000557626 MAP2K1Q02750 393 aaPredicted RBP19.16■□□□□ 0.66
TMEM260-215ENST00000557626 RGPD2P0DJD1 1756 aa19.15■□□□□ 0.66
TMEM260-215ENST00000557626 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.15■□□□□ 0.66
TMEM260-215ENST00000557626 ITGB4P16144 1822 aa19.15■□□□□ 0.66
TMEM260-215ENST00000557626 CCDC88AQ3V6T2 1871 aa19.15■□□□□ 0.66
TMEM260-215ENST00000557626 MAP2P11137 1827 aaKnown RBP19.14■□□□□ 0.65
TMEM260-215ENST00000557626 MON2Q7Z3U7 1717 aa19.14■□□□□ 0.65
TMEM260-215ENST00000557626 IP6K1Q92551 441 aa19.13■□□□□ 0.65
TMEM260-215ENST00000557626 PASKQ96RG2 1323 aa19.12■□□□□ 0.65
TMEM260-215ENST00000557626 TMEM88BA6NKF7 163 aa19.12■□□□□ 0.65
TMEM260-215ENST00000557626 PRPF38BQ5VTL8 546 aaKnown RBP19.12■□□□□ 0.65
TMEM260-215ENST00000557626 DPY19L2Q6NUT2 758 aa19.12■□□□□ 0.65
TMEM260-215ENST00000557626 EVC2Q86UK5 1308 aa19.11■□□□□ 0.65
TMEM260-215ENST00000557626 LOC102724428A0A0B4J2F2 783 aa19.11■□□□□ 0.65
TMEM260-215ENST00000557626 SIK1P57059 783 aa19.11■□□□□ 0.65
TMEM260-215ENST00000557626 POTEIP0CG38 1075 aa19.1■□□□□ 0.65
TMEM260-215ENST00000557626 POTEJP0CG39 1038 aa19.1■□□□□ 0.65
TMEM260-215ENST00000557626 TRAPPC3LQ5T215 181 aa19.1■□□□□ 0.65
TMEM260-215ENST00000557626 NME9Q86XW9 330 aa19.1■□□□□ 0.65
TMEM260-215ENST00000557626 CGNL1Q0VF96 1302 aa19.09■□□□□ 0.65
TMEM260-215ENST00000557626 CHRNA5P30532 468 aa19.09■□□□□ 0.65
TMEM260-215ENST00000557626 PCDH11XQ9BZA7 1347 aa19.08■□□□□ 0.65
TMEM260-215ENST00000557626 PCDH11YQ9BZA8 1340 aa19.08■□□□□ 0.65
TMEM260-215ENST00000557626 BEGAINQ9BUH8 593 aa19.08■□□□□ 0.64
TMEM260-215ENST00000557626 MCOLN1Q9GZU1 580 aa19.08■□□□□ 0.64
TMEM260-215ENST00000557626 GYS1P13807 737 aa19.07■□□□□ 0.64
TMEM260-215ENST00000557626 ITPK1Q13572 414 aa19.07■□□□□ 0.64
TMEM260-215ENST00000557626 NBPF1Q3BBV0 1214 aa19.07■□□□□ 0.64
TMEM260-215ENST00000557626 RTCBQ9Y3I0 505 aaKnown RBP19.07■□□□□ 0.64
TMEM260-215ENST00000557626 WDR33Q9C0J8 1336 aaKnown RBP19.06■□□□□ 0.64
TMEM260-215ENST00000557626 DEFB115Q30KQ5 88 aa19.06■□□□□ 0.64
TMEM260-215ENST00000557626 RASSF10A6NK89 507 aa19.05■□□□□ 0.64
TMEM260-215ENST00000557626 ATP6V1AP38606 617 aa19.05■□□□□ 0.64
TMEM260-215ENST00000557626 RAPGEF4Q8WZA2 1011 aa19.05■□□□□ 0.64
TMEM260-215ENST00000557626 PIGBQ92521 554 aa19.05■□□□□ 0.64
TMEM260-215ENST00000557626 ARHGEF1Q92888 912 aaKnown RBP19.03■□□□□ 0.64
TMEM260-215ENST00000557626 CD163L1Q9NR16 1453 aa19.03■□□□□ 0.64
TMEM260-215ENST00000557626 TATP17735 454 aaPredicted RBP19.02■□□□□ 0.64
TMEM260-215ENST00000557626 ADRA2BP18089 450 aa19.02■□□□□ 0.64
TMEM260-215ENST00000557626 RFC4P35249 363 aa19.02■□□□□ 0.64
TMEM260-215ENST00000557626 LDHDQ86WU2 507 aa19.02■□□□□ 0.64
TMEM260-215ENST00000557626 THSD7BQ9C0I4 1608 aa19.01■□□□□ 0.63
TMEM260-215ENST00000557626 USHBP1Q8N6Y0 703 aa19.01■□□□□ 0.63
TMEM260-215ENST00000557626 DICER1Q9UPY3 1922 aaKnown RBP19.01■□□□□ 0.63
TMEM260-215ENST00000557626 HOXC9P31274 260 aa19■□□□□ 0.63
TMEM260-215ENST00000557626 SBNO2Q9Y2G9 1366 aa19■□□□□ 0.63
TMEM260-215ENST00000557626 TSKSQ9UJT2 592 aa18.99■□□□□ 0.63
TMEM260-215ENST00000557626 CASP8AP2Q9UKL3 1982 aa18.99■□□□□ 0.63
TMEM260-215ENST00000557626 CYP27B1O15528 508 aa18.98■□□□□ 0.63
TMEM260-215ENST00000557626 AMPHP49418 695 aa18.98■□□□□ 0.63
TMEM260-215ENST00000557626 NBPF6Q5VWK0 638 aa18.98■□□□□ 0.63
TMEM260-215ENST00000557626 NBPF4Q96M43 638 aa18.98■□□□□ 0.63
TMEM260-215ENST00000557626 NFKBIEO00221 500 aa18.97■□□□□ 0.63
TMEM260-215ENST00000557626 ITGBL1O95965 494 aaPredicted RBP18.97■□□□□ 0.63
TMEM260-215ENST00000557626 DGKZQ13574 1117 aa18.97■□□□□ 0.63
TMEM260-215ENST00000557626 ERFEQ4G0M1 354 aa18.97■□□□□ 0.63
TMEM260-215ENST00000557626 ABT1Q9ULW3 272 aaKnown RBP18.97■□□□□ 0.63
TMEM260-215ENST00000557626 IQCA1LA6NCM1 817 aa18.96■□□□□ 0.63
TMEM260-215ENST00000557626 DDR1Q08345 913 aa18.96■□□□□ 0.63
TMEM260-215ENST00000557626 ASAP1Q9ULH1 1129 aa18.96■□□□□ 0.63
TMEM260-215ENST00000557626 LTBP1Q14766 1721 aa18.96■□□□□ 0.63
TMEM260-215ENST00000557626 MAP3K19Q56UN5 1328 aa18.96■□□□□ 0.63
TMEM260-215ENST00000557626 DDNO94850 711 aaPredicted RBP18.95■□□□□ 0.62
TMEM260-215ENST00000557626 SOX10P56693 466 aa18.95■□□□□ 0.62
TMEM260-215ENST00000557626 TMOD3Q9NYL9 352 aa18.95■□□□□ 0.62
TMEM260-215ENST00000557626 ZNF219Q9P2Y4 722 aaPredicted RBP18.95■□□□□ 0.62
TMEM260-215ENST00000557626 DLEC1Q9Y238 1755 aa18.95■□□□□ 0.62
TMEM260-215ENST00000557626 SCN4AP35499 1836 aa18.95■□□□□ 0.62
TMEM260-215ENST00000557626 PAXIP1Q6ZW49 1069 aaPredicted RBP18.94■□□□□ 0.62
TMEM260-215ENST00000557626 TTLL6Q8N841 843 aa18.93■□□□□ 0.62
TMEM260-215ENST00000557626 GCC1Q96CN9 775 aa18.93■□□□□ 0.62
TMEM260-215ENST00000557626 EDC4Q6P2E9 1401 aaKnown RBP18.92■□□□□ 0.62
TMEM260-215ENST00000557626 SMG6Q86US8 1419 aaKnown RBP18.92■□□□□ 0.62
TMEM260-215ENST00000557626 COL5A3P25940 1745 aaPredicted RBP18.92■□□□□ 0.62
TMEM260-215ENST00000557626 RC3H1Q5TC82 1133 aaKnown RBP18.92■□□□□ 0.62
TMEM260-215ENST00000557626 CAPNS2Q96L46 248 aa18.92■□□□□ 0.62
TMEM260-215ENST00000557626 RPS6KA4O75676 772 aa18.91■□□□□ 0.62
TMEM260-215ENST00000557626 ECE1P42892 770 aa18.91■□□□□ 0.62
TMEM260-215ENST00000557626 GRM1Q13255 1194 aa18.91■□□□□ 0.62
TMEM260-215ENST00000557626 FKBP8Q14318 412 aa18.91■□□□□ 0.62
TMEM260-215ENST00000557626 EAPPQ56P03 285 aaPredicted RBP18.91■□□□□ 0.62
TMEM260-215ENST00000557626 GPR101Q96P66 508 aaPredicted RBP18.91■□□□□ 0.62
TMEM260-215ENST00000557626 TAF1DQ9H5J8 278 aaPredicted RBP18.91■□□□□ 0.62
TMEM260-215ENST00000557626 CLEC11AQ9Y240 323 aa18.9■□□□□ 0.62
TMEM260-215ENST00000557626 CNTNAP4Q9C0A0 1308 aa18.9■□□□□ 0.62
TMEM260-215ENST00000557626 KDRP35968 1356 aa18.9■□□□□ 0.62
TMEM260-215ENST00000557626 POLRMTO00411 1230 aaKnown RBP18.89■□□□□ 0.61
TMEM260-215ENST00000557626 HDGFL2Q7Z4V5 671 aaPredicted RBP18.89■□□□□ 0.61
TMEM260-215ENST00000557626 SRP68Q9UHB9 627 aaKnown RBP18.89■□□□□ 0.61
TMEM260-215ENST00000557626 RTL1A6NKG5 1358 aa18.89■□□□□ 0.61
TMEM260-215ENST00000557626 ZNF831Q5JPB2 1677 aa18.89■□□□□ 0.61
TMEM260-215ENST00000557626 MYH14Q7Z406 1995 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms