RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 MRC1P22897 1456 aa16.61■□□□□ 0.25
SLIRP-209ENST00000557342 DLG5Q8TDM6 1919 aa16.61■□□□□ 0.25
SLIRP-209ENST00000557342 NFATC2IPQ8NCF5 419 aa16.61■□□□□ 0.25
SLIRP-209ENST00000557342 PHACTR3Q96KR7 559 aa16.61■□□□□ 0.25
SLIRP-209ENST00000557342 ATG3Q9NT62 314 aa16.61■□□□□ 0.25
SLIRP-209ENST00000557342 SIPA1L3O60292 1781 aaPredicted RBP16.6■□□□□ 0.25
SLIRP-209ENST00000557342 LOC102724428A0A0B4J2F2 783 aa16.6■□□□□ 0.25
SLIRP-209ENST00000557342 KCNQ4P56696 695 aa16.6■□□□□ 0.25
SLIRP-209ENST00000557342 SIK1P57059 783 aa16.6■□□□□ 0.25
SLIRP-209ENST00000557342 AKT1S1Q96B36 256 aa16.6■□□□□ 0.25
SLIRP-209ENST00000557342 SLC52A2Q9HAB3 445 aa16.6■□□□□ 0.25
SLIRP-209ENST00000557342 LGR6Q9HBX8 967 aa16.6■□□□□ 0.25
SLIRP-209ENST00000557342 C4BP0C0L5 1744 aa16.59■□□□□ 0.25
SLIRP-209ENST00000557342 ZNF827Q17R98 1081 aa16.59■□□□□ 0.25
SLIRP-209ENST00000557342 TFCP2L1Q9NZI6 479 aa16.58■□□□□ 0.24
SLIRP-209ENST00000557342 SRCAPQ6ZRS2 3230 aa16.57■□□□□ 0.24
SLIRP-209ENST00000557342 COL5A3P25940 1745 aaPredicted RBP16.57■□□□□ 0.24
SLIRP-209ENST00000557342 ATP6V1AP38606 617 aa16.57■□□□□ 0.24
SLIRP-209ENST00000557342 RTF1Q92541 710 aaKnown RBP16.57■□□□□ 0.24
SLIRP-209ENST00000557342 UBR3Q6ZT12 1888 aa16.56■□□□□ 0.24
SLIRP-209ENST00000557342 MAPK8IP3Q9UPT6 1336 aa16.56■□□□□ 0.24
SLIRP-209ENST00000557342 HTATSF1O43719 755 aaKnown RBP16.56■□□□□ 0.24
SLIRP-209ENST00000557342 TEFQ10587 303 aa16.56■□□□□ 0.24
SLIRP-209ENST00000557342 PLEKHF1Q96S99 279 aa16.56■□□□□ 0.24
SLIRP-209ENST00000557342 RBM42Q9BTD8 480 aaKnown RBP16.56■□□□□ 0.24
SLIRP-209ENST00000557342 SPON1Q9HCB6 807 aa16.56■□□□□ 0.24
SLIRP-209ENST00000557342 CICQ96RK0 1608 aaPredicted RBP16.56■□□□□ 0.24
SLIRP-209ENST00000557342 ANP32CO43423 234 aa16.55■□□□□ 0.24
SLIRP-209ENST00000557342 WDR43Q15061 677 aaKnown RBP eCLIP16.55■□□□□ 0.24
SLIRP-209ENST00000557342 IL17REQ8NFR9 667 aa16.55■□□□□ 0.24
SLIRP-209ENST00000557342 UBR2Q8IWV8 1755 aa16.55■□□□□ 0.24
SLIRP-209ENST00000557342 CEMIPQ8WUJ3 1361 aa16.54■□□□□ 0.24
SLIRP-209ENST00000557342 FLAD1Q8NFF5 587 aa16.54■□□□□ 0.24
SLIRP-209ENST00000557342 AK7Q96M32 723 aa16.54■□□□□ 0.24
SLIRP-209ENST00000557342 TJP1Q07157 1748 aa16.53■□□□□ 0.24
SLIRP-209ENST00000557342 PNPLA7Q6ZV29 1317 aa16.53■□□□□ 0.24
SLIRP-209ENST00000557342 SLC16A10Q8TF71 515 aa16.53■□□□□ 0.24
SLIRP-209ENST00000557342 PDGFDQ9GZP0 370 aaPredicted RBP16.53■□□□□ 0.24
SLIRP-209ENST00000557342 MTFR1LQ9H019 292 aa16.53■□□□□ 0.24
SLIRP-209ENST00000557342 PTCD1O75127 700 aaKnown RBP16.52■□□□□ 0.24
SLIRP-209ENST00000557342 ITPK1Q13572 414 aa16.52■□□□□ 0.24
SLIRP-209ENST00000557342 NFE2L2Q16236 605 aa16.52■□□□□ 0.24
SLIRP-209ENST00000557342 LINC00116Q8NCU8 138 aa16.52■□□□□ 0.24
SLIRP-209ENST00000557342 COL24A1Q17RW2 1714 aa16.51■□□□□ 0.23
SLIRP-209ENST00000557342 ZBTB7AO95365 584 aa16.51■□□□□ 0.23
SLIRP-209ENST00000557342 TTC5Q8N0Z6 440 aa16.51■□□□□ 0.23
SLIRP-209ENST00000557342 SLC4A9Q96Q91 983 aa16.51■□□□□ 0.23
SLIRP-209ENST00000557342 KCPQ6ZWJ8 1503 aa16.5■□□□□ 0.23
SLIRP-209ENST00000557342 SLC39A6Q13433 755 aa16.5■□□□□ 0.23
SLIRP-209ENST00000557342 RC3H1Q5TC82 1133 aaKnown RBP16.5■□□□□ 0.23
SLIRP-209ENST00000557342 MYH14Q7Z406 1995 aaKnown RBP16.49■□□□□ 0.23
SLIRP-209ENST00000557342 CNTNAP4Q9C0A0 1308 aa16.49■□□□□ 0.23
SLIRP-209ENST00000557342 MSH5O43196 834 aa16.49■□□□□ 0.23
SLIRP-209ENST00000557342 MCM10Q7L590 875 aa16.49■□□□□ 0.23
SLIRP-209ENST00000557342 VSIG10Q8N0Z9 540 aa16.49■□□□□ 0.23
SLIRP-209ENST00000557342 ATF5Q9Y2D1 282 aaPredicted RBP16.49■□□□□ 0.23
SLIRP-209ENST00000557342 BTBD11A6QL63 1104 aa16.48■□□□□ 0.23
SLIRP-209ENST00000557342 GNPATO15228 680 aa16.48■□□□□ 0.23
SLIRP-209ENST00000557342 SSFA2P28290 1259 aa16.48■□□□□ 0.23
SLIRP-209ENST00000557342 ZNF790Q6PG37 636 aa16.48■□□□□ 0.23
SLIRP-209ENST00000557342 COL23A1Q86Y22 540 aaPredicted RBP16.48■□□□□ 0.23
SLIRP-209ENST00000557342 RUNDC1Q96C34 613 aa16.48■□□□□ 0.23
SLIRP-209ENST00000557342 PPP1R1BQ9UD71 204 aaPredicted RBP16.48■□□□□ 0.23
SLIRP-209ENST00000557342 ADAMTS8Q9UP79 889 aa16.48■□□□□ 0.23
SLIRP-209ENST00000557342 LMOD3Q0VAK6 560 aa16.47■□□□□ 0.23
SLIRP-209ENST00000557342 DCTN1Q14203 1278 aa16.47■□□□□ 0.23
SLIRP-209ENST00000557342 RTCBQ9Y3I0 505 aaKnown RBP16.47■□□□□ 0.23
SLIRP-209ENST00000557342 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.46■□□□□ 0.23
SLIRP-209ENST00000557342 PHF14O94880 888 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 ADRA2BP18089 450 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 TMPOP42166 694 aaKnown RBP16.45■□□□□ 0.22
SLIRP-209ENST00000557342 PTGER2P43116 358 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 RIPK4P57078 832 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 TAF7Q15545 349 aaPredicted RBP16.45■□□□□ 0.22
SLIRP-209ENST00000557342 DNAJC10Q8IXB1 793 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 CCDC146Q8IYE0 955 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 PNISRQ8TF01 805 aaKnown RBP16.45■□□□□ 0.22
SLIRP-209ENST00000557342 FMNL2Q96PY5 1086 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 KDM3BQ7LBC6 1761 aa16.45■□□□□ 0.22
SLIRP-209ENST00000557342 HEG1Q9ULI3 1381 aa16.44■□□□□ 0.22
SLIRP-209ENST00000557342 RPS6KA4O75676 772 aa16.44■□□□□ 0.22
SLIRP-209ENST00000557342 POLD1P28340 1107 aa16.44■□□□□ 0.22
SLIRP-209ENST00000557342 CRKLP46109 303 aaKnown RBP16.44■□□□□ 0.22
SLIRP-209ENST00000557342 TRAPPC3LQ5T215 181 aa16.44■□□□□ 0.22
SLIRP-209ENST00000557342 TEX13AQ9BXU3 409 aaPredicted RBP16.44■□□□□ 0.22
SLIRP-209ENST00000557342 C4AP0C0L4 1744 aa16.44■□□□□ 0.22
SLIRP-209ENST00000557342 ZNF496Q96IT1 587 aaPredicted RBP16.43■□□□□ 0.22
SLIRP-209ENST00000557342 SGIP1Q9BQI5 828 aa16.43■□□□□ 0.22
SLIRP-209ENST00000557342 STARD3NLO95772 234 aa16.42■□□□□ 0.22
SLIRP-209ENST00000557342 CYP19A1P11511 503 aaPredicted RBP16.42■□□□□ 0.22
SLIRP-209ENST00000557342 AMIGO3Q86WK7 504 aa16.42■□□□□ 0.22
SLIRP-209ENST00000557342 MRS2Q9HD23 443 aa16.42■□□□□ 0.22
SLIRP-209ENST00000557342 CCDC87Q9NVE4 849 aa16.42■□□□□ 0.22
SLIRP-209ENST00000557342 CCDC184Q52MB2 194 aa16.41■□□□□ 0.22
SLIRP-209ENST00000557342 KCNQ3O43525 872 aa16.4■□□□□ 0.22
SLIRP-209ENST00000557342 RFC4P35249 363 aa16.4■□□□□ 0.22
SLIRP-209ENST00000557342 NEUROD2Q15784 382 aa16.4■□□□□ 0.22
SLIRP-209ENST00000557342 INTS5Q6P9B9 1019 aaKnown RBP16.4■□□□□ 0.22
SLIRP-209ENST00000557342 ARXQ96QS3 562 aa16.4■□□□□ 0.22
SLIRP-209ENST00000557342 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms