RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 SIPA1L3O60292 1781 aaPredicted RBP12.73□□□□□ -0.37
TMEM260-213ENST00000556929 RGS12O14924 1447 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 SBF2Q86WG5 1849 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 ZBED9Q6R2W3 1325 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 TOGARAM1Q9Y4F4 1720 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 RNMTO43148 476 aaKnown RBP12.72□□□□□ -0.37
TMEM260-213ENST00000556929 TEFQ10587 303 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 MCM10Q7L590 875 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 KRT27Q7Z3Y8 459 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 WDR63Q8IWG1 891 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 WWC1Q8IX03 1113 aa12.72□□□□□ -0.37
TMEM260-213ENST00000556929 MARCH10Q8NA82 808 aaPredicted RBP12.72□□□□□ -0.37
TMEM260-213ENST00000556929 ERVV-2B6SEH9 535 aa12.71□□□□□ -0.37
TMEM260-213ENST00000556929 DCTN1Q14203 1278 aa12.71□□□□□ -0.37
TMEM260-213ENST00000556929 IL17REQ8NFR9 667 aa12.71□□□□□ -0.37
TMEM260-213ENST00000556929 LGR6Q9HBX8 967 aa12.71□□□□□ -0.37
TMEM260-213ENST00000556929 KDM6AO15550 1401 aaPredicted RBP12.71□□□□□ -0.38
TMEM260-213ENST00000556929 CEMIPQ8WUJ3 1361 aa12.7□□□□□ -0.38
TMEM260-213ENST00000556929 CABP4P57796 275 aa12.7□□□□□ -0.38
TMEM260-213ENST00000556929 GOLGA2Q08379 1002 aa12.69□□□□□ -0.38
TMEM260-213ENST00000556929 NHSQ6T4R5 1651 aa12.69□□□□□ -0.38
TMEM260-213ENST00000556929 BCL9O00512 1426 aa12.69□□□□□ -0.38
TMEM260-213ENST00000556929 IL16Q14005 1332 aa12.68□□□□□ -0.38
TMEM260-213ENST00000556929 ZNF521Q96K83 1311 aa12.68□□□□□ -0.38
TMEM260-213ENST00000556929 MRC1P22897 1456 aa12.68□□□□□ -0.38
TMEM260-213ENST00000556929 GNAI1P63096 354 aa12.68□□□□□ -0.38
TMEM260-213ENST00000556929 TAF7Q15545 349 aaPredicted RBP12.68□□□□□ -0.38
TMEM260-213ENST00000556929 FAM196AQ6ZSG2 479 aa12.68□□□□□ -0.38
TMEM260-213ENST00000556929 THUMPD2Q9BTF0 503 aaKnown RBP12.68□□□□□ -0.38
TMEM260-213ENST00000556929 SLC52A2Q9HAB3 445 aa12.68□□□□□ -0.38
TMEM260-213ENST00000556929 KDM3BQ7LBC6 1761 aa12.68□□□□□ -0.38
TMEM260-213ENST00000556929 NFATC2IPQ8NCF5 419 aa12.67□□□□□ -0.38
TMEM260-213ENST00000556929 SYTL4Q96C24 671 aaPredicted RBP12.67□□□□□ -0.38
TMEM260-213ENST00000556929 CFAP44Q96MT7 982 aa12.67□□□□□ -0.38
TMEM260-213ENST00000556929 IFT57Q9NWB7 429 aa12.67□□□□□ -0.38
TMEM260-213ENST00000556929 BABAM1Q9NWV8 329 aa12.67□□□□□ -0.38
TMEM260-213ENST00000556929 TMOD3Q9NYL9 352 aa12.67□□□□□ -0.38
TMEM260-213ENST00000556929 LAS1LQ9Y4W2 734 aaKnown RBP12.67□□□□□ -0.38
TMEM260-213ENST00000556929 BTBD11A6QL63 1104 aa12.66□□□□□ -0.38
TMEM260-213ENST00000556929 E9PSI1 815 aa12.66□□□□□ -0.38
TMEM260-213ENST00000556929 FAM182BQ5T319 152 aa12.66□□□□□ -0.38
TMEM260-213ENST00000556929 ACSBG1Q96GR2 724 aa12.66□□□□□ -0.38
TMEM260-213ENST00000556929 MYH16Q9H6N6 1097 aa12.66□□□□□ -0.38
TMEM260-213ENST00000556929 PAPPAQ13219 1627 aa12.66□□□□□ -0.38
TMEM260-213ENST00000556929 BTAF1O14981 1849 aa12.65□□□□□ -0.38
TMEM260-213ENST00000556929 PRIM1P49642 420 aaKnown RBP12.65□□□□□ -0.38
TMEM260-213ENST00000556929 SLFN5Q08AF3 891 aa12.64□□□□□ -0.39
TMEM260-213ENST00000556929 TTC5Q8N0Z6 440 aa12.64□□□□□ -0.39
TMEM260-213ENST00000556929 TSPYL4Q9UJ04 414 aa12.64□□□□□ -0.39
TMEM260-213ENST00000556929 UBR2Q8IWV8 1755 aa12.64□□□□□ -0.39
TMEM260-213ENST00000556929 CHL1O00533 1208 aa12.63□□□□□ -0.39
TMEM260-213ENST00000556929 ZNF853P0CG23 659 aa12.63□□□□□ -0.39
TMEM260-213ENST00000556929 PIGBQ92521 554 aa12.62□□□□□ -0.39
TMEM260-213ENST00000556929 CDCA7LQ96GN5 454 aa12.62□□□□□ -0.39
TMEM260-213ENST00000556929 BCL11BQ9C0K0 894 aaPredicted RBP12.62□□□□□ -0.39
TMEM260-213ENST00000556929 MIS18AQ9NYP9 233 aa12.62□□□□□ -0.39
TMEM260-213ENST00000556929 KCNQ2O43526 872 aa12.61□□□□□ -0.39
TMEM260-213ENST00000556929 ZNF790Q6PG37 636 aa12.61□□□□□ -0.39
TMEM260-213ENST00000556929 SMARCC1Q92922 1105 aaPredicted RBP12.61□□□□□ -0.39
TMEM260-213ENST00000556929 MBIPQ9NS73 344 aa12.61□□□□□ -0.39
TMEM260-213ENST00000556929 FANCIQ9NVI1 1328 aa12.61□□□□□ -0.39
TMEM260-213ENST00000556929 LY75O60449 1722 aa12.6□□□□□ -0.39
TMEM260-213ENST00000556929 TNS1Q9HBL0 1735 aaKnown RBP12.6□□□□□ -0.39
TMEM260-213ENST00000556929 TRIM37O94972 964 aa12.6□□□□□ -0.39
TMEM260-213ENST00000556929 SLC39A6Q13433 755 aa12.6□□□□□ -0.39
TMEM260-213ENST00000556929 TRMT2AQ8IZ69 625 aaKnown RBP12.6□□□□□ -0.39
TMEM260-213ENST00000556929 TSR2Q969E8 191 aaKnown RBP12.6□□□□□ -0.39
TMEM260-213ENST00000556929 DUSP27Q5VZP5 1158 aa12.59□□□□□ -0.39
TMEM260-213ENST00000556929 FMNL2Q96PY5 1086 aa12.59□□□□□ -0.39
TMEM260-213ENST00000556929 ATG3Q9NT62 314 aa12.59□□□□□ -0.39
TMEM260-213ENST00000556929 LAMB4A4D0S4 1761 aa12.58□□□□□ -0.39
TMEM260-213ENST00000556929 ZNF831Q5JPB2 1677 aa12.58□□□□□ -0.4
TMEM260-213ENST00000556929 EIF4A1P60842 406 aaKnown RBP12.58□□□□□ -0.4
TMEM260-213ENST00000556929 ASAP1Q9ULH1 1129 aa12.58□□□□□ -0.4
TMEM260-213ENST00000556929 KCPQ6ZWJ8 1503 aa12.57□□□□□ -0.4
TMEM260-213ENST00000556929 RGPD3A6NKT7 1758 aaPredicted RBP12.57□□□□□ -0.4
TMEM260-213ENST00000556929 RGPD4Q7Z3J3 1758 aa12.57□□□□□ -0.4
TMEM260-213ENST00000556929 KCNQ3O43525 872 aa12.57□□□□□ -0.4
TMEM260-213ENST00000556929 EXOSC9Q06265 439 aaKnown RBP12.57□□□□□ -0.4
TMEM260-213ENST00000556929 SF3B2Q13435 895 aaKnown RBP12.57□□□□□ -0.4
TMEM260-213ENST00000556929 CHMP4AQ9BY43 222 aa12.57□□□□□ -0.4
TMEM260-213ENST00000556929 C5P01031 1676 aa12.57□□□□□ -0.4
TMEM260-213ENST00000556929 SOS1Q07889 1333 aaPredicted RBP12.57□□□□□ -0.4
TMEM260-213ENST00000556929 PALLDQ8WX93 1383 aa12.56□□□□□ -0.4
TMEM260-213ENST00000556929 CICQ96RK0 1608 aaPredicted RBP12.56□□□□□ -0.4
TMEM260-213ENST00000556929 PTCD1O75127 700 aaKnown RBP12.56□□□□□ -0.4
TMEM260-213ENST00000556929 VSIG10Q8N0Z9 540 aa12.56□□□□□ -0.4
TMEM260-213ENST00000556929 CACNA1FO60840 1977 aa12.56□□□□□ -0.4
TMEM260-213ENST00000556929 HEG1Q9ULI3 1381 aa12.56□□□□□ -0.4
TMEM260-213ENST00000556929 TJP1Q07157 1748 aa12.55□□□□□ -0.4
TMEM260-213ENST00000556929 APBA3O96018 575 aa12.55□□□□□ -0.4
TMEM260-213ENST00000556929 HOXB7P09629 217 aa12.55□□□□□ -0.4
TMEM260-213ENST00000556929 SNRPA1P09661 255 aaKnown RBP12.55□□□□□ -0.4
TMEM260-213ENST00000556929 CT47B1P0C2W7 299 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-213ENST00000556929 HMGB2P26583 209 aaKnown RBP12.55□□□□□ -0.4
TMEM260-213ENST00000556929 TWISTNBQ3B726 338 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-213ENST00000556929 PTF1AQ7RTS3 328 aa12.55□□□□□ -0.4
TMEM260-213ENST00000556929 CCDC125Q86Z20 511 aa12.55□□□□□ -0.4
TMEM260-213ENST00000556929 ZNF496Q96IT1 587 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-213ENST00000556929 TEX13AQ9BXU3 409 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms