RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PALLDQ8WX93 1383 aa23.14■■□□□ 1.29
SHMT2-225ENST00000556798 MCM10Q7L590 875 aa23.13■■□□□ 1.29
SHMT2-225ENST00000556798 SLC52A2Q9HAB3 445 aa23.13■■□□□ 1.29
SHMT2-225ENST00000556798 DCTN1Q14203 1278 aa23.12■■□□□ 1.29
SHMT2-225ENST00000556798 ASAP1Q9ULH1 1129 aa23.12■■□□□ 1.29
SHMT2-225ENST00000556798 RRP7AQ9Y3A4 280 aaKnown RBP23.12■■□□□ 1.29
SHMT2-225ENST00000556798 C5P01031 1676 aa23.12■■□□□ 1.29
SHMT2-225ENST00000556798 RTF1Q92541 710 aaKnown RBP23.11■■□□□ 1.29
SHMT2-225ENST00000556798 CEMIPQ8WUJ3 1361 aa23.11■■□□□ 1.29
SHMT2-225ENST00000556798 TMPOP42166 694 aaKnown RBP23.1■■□□□ 1.29
SHMT2-225ENST00000556798 KCNQ4P56696 695 aa23.1■■□□□ 1.29
SHMT2-225ENST00000556798 ATG3Q9NT62 314 aa23.1■■□□□ 1.29
SHMT2-225ENST00000556798 UBR2Q8IWV8 1755 aa23.09■■□□□ 1.29
SHMT2-225ENST00000556798 NEUROD2Q15784 382 aa23.09■■□□□ 1.29
SHMT2-225ENST00000556798 RIPK4P57078 832 aa23.08■■□□□ 1.29
SHMT2-225ENST00000556798 TEFQ10587 303 aa23.08■■□□□ 1.29
SHMT2-225ENST00000556798 FAM9BQ8IZU0 186 aa23.08■■□□□ 1.29
SHMT2-225ENST00000556798 MIER1Q8N108 512 aa23.08■■□□□ 1.29
SHMT2-225ENST00000556798 SMARCC1Q92922 1105 aaPredicted RBP23.08■■□□□ 1.29
SHMT2-225ENST00000556798 LRRC4BQ9NT99 713 aa23.08■■□□□ 1.29
SHMT2-225ENST00000556798 HTATSF1O43719 755 aaKnown RBP23.07■■□□□ 1.28
SHMT2-225ENST00000556798 THUMPD2Q9BTF0 503 aaKnown RBP23.07■■□□□ 1.28
SHMT2-225ENST00000556798 CCNL1Q9UK58 526 aaPredicted RBP23.07■■□□□ 1.28
SHMT2-225ENST00000556798 TUBGCP6Q96RT7 1819 aa23.07■■□□□ 1.28
SHMT2-225ENST00000556798 SENP3-EIF4A1A0A087X0R7 540 aa23.06■■□□□ 1.28
SHMT2-225ENST00000556798 TJP1Q07157 1748 aa23.05■■□□□ 1.28
SHMT2-225ENST00000556798 APAF1O14727 1248 aa23.05■■□□□ 1.28
SHMT2-225ENST00000556798 SLC39A6Q13433 755 aa23.05■■□□□ 1.28
SHMT2-225ENST00000556798 ZNF831Q5JPB2 1677 aa23.05■■□□□ 1.28
SHMT2-225ENST00000556798 COL5A3P25940 1745 aaPredicted RBP23.05■■□□□ 1.28
SHMT2-225ENST00000556798 KDM3BQ7LBC6 1761 aa23.04■■□□□ 1.28
SHMT2-225ENST00000556798 KCPQ6ZWJ8 1503 aa23.04■■□□□ 1.28
SHMT2-225ENST00000556798 CCER2I3L3R5 266 aa23.04■■□□□ 1.28
SHMT2-225ENST00000556798 SLC27A3Q5K4L6 730 aa23.04■■□□□ 1.28
SHMT2-225ENST00000556798 ANO8Q9HCE9 1232 aaPredicted RBP23.04■■□□□ 1.28
SHMT2-225ENST00000556798 LOC102724428A0A0B4J2F2 783 aa23.03■■□□□ 1.28
SHMT2-225ENST00000556798 SIK1P57059 783 aa23.03■■□□□ 1.28
SHMT2-225ENST00000556798 RBM42Q9BTD8 480 aaKnown RBP23.03■■□□□ 1.28
SHMT2-225ENST00000556798 C4BP0C0L5 1744 aa23.02■■□□□ 1.28
SHMT2-225ENST00000556798 CICQ96RK0 1608 aaPredicted RBP23.01■■□□□ 1.27
SHMT2-225ENST00000556798 PTCD1O75127 700 aaKnown RBP23.01■■□□□ 1.27
SHMT2-225ENST00000556798 LMOD3Q0VAK6 560 aa23■■□□□ 1.27
SHMT2-225ENST00000556798 SLC4A9Q96Q91 983 aa23■■□□□ 1.27
SHMT2-225ENST00000556798 TRIM35Q9UPQ4 493 aa23■■□□□ 1.27
SHMT2-225ENST00000556798 PSDA5PKW4 1024 aaPredicted RBP22.99■■□□□ 1.27
SHMT2-225ENST00000556798 BTBD11A6QL63 1104 aa22.99■■□□□ 1.27
SHMT2-225ENST00000556798 ATP6V1AP38606 617 aa22.99■■□□□ 1.27
SHMT2-225ENST00000556798 ITPK1Q13572 414 aa22.99■■□□□ 1.27
SHMT2-225ENST00000556798 NBPF14Q5TI25 921 aa22.99■■□□□ 1.27
SHMT2-225ENST00000556798 QSER1Q2KHR3 1735 aa22.99■■□□□ 1.27
SHMT2-225ENST00000556798 KCNQ3O43525 872 aa22.98■■□□□ 1.27
SHMT2-225ENST00000556798 R3HDM1Q15032 1099 aaKnown RBP22.98■■□□□ 1.27
SHMT2-225ENST00000556798 ZNF827Q17R98 1081 aa22.98■■□□□ 1.27
SHMT2-225ENST00000556798 TTC5Q8N0Z6 440 aa22.98■■□□□ 1.27
SHMT2-225ENST00000556798 UBR3Q6ZT12 1888 aa22.98■■□□□ 1.27
SHMT2-225ENST00000556798 ZNF790Q6PG37 636 aa22.97■■□□□ 1.27
SHMT2-225ENST00000556798 STK32BQ9NY57 414 aa22.97■■□□□ 1.27
SHMT2-225ENST00000556798 MIS18AQ9NYP9 233 aa22.97■■□□□ 1.27
SHMT2-225ENST00000556798 MYH14Q7Z406 1995 aaKnown RBP22.97■■□□□ 1.27
SHMT2-225ENST00000556798 TAF7Q15545 349 aaPredicted RBP22.96■■□□□ 1.27
SHMT2-225ENST00000556798 LINC00116Q8NCU8 138 aa22.96■■□□□ 1.27
SHMT2-225ENST00000556798 CASZ1Q86V15 1759 aa22.95■■□□□ 1.26
SHMT2-225ENST00000556798 SLC15A2Q16348 729 aa22.94■■□□□ 1.26
SHMT2-225ENST00000556798 AKT1S1Q96B36 256 aa22.94■■□□□ 1.26
SHMT2-225ENST00000556798 ZNF496Q96IT1 587 aaPredicted RBP22.94■■□□□ 1.26
SHMT2-225ENST00000556798 LAMB4A4D0S4 1761 aa22.92■■□□□ 1.26
SHMT2-225ENST00000556798 SALL2Q9Y467 1007 aaPredicted RBP22.92■■□□□ 1.26
SHMT2-225ENST00000556798 HEG1Q9ULI3 1381 aa22.91■■□□□ 1.26
SHMT2-225ENST00000556798 DNAJC10Q8IXB1 793 aa22.91■■□□□ 1.26
SHMT2-225ENST00000556798 FMNL2Q96PY5 1086 aa22.9■■□□□ 1.26
SHMT2-225ENST00000556798 LAS1LQ9Y4W2 734 aaKnown RBP22.9■■□□□ 1.26
SHMT2-225ENST00000556798 AK7Q96M32 723 aa22.89■■□□□ 1.25
SHMT2-225ENST00000556798 TFCP2L1Q9NZI6 479 aa22.89■■□□□ 1.25
SHMT2-225ENST00000556798 TSPYL4Q9UJ04 414 aa22.89■■□□□ 1.25
SHMT2-225ENST00000556798 PDGFDQ9GZP0 370 aaPredicted RBP22.88■■□□□ 1.25
SHMT2-225ENST00000556798 SMIM5Q71RC9 77 aa22.87■■□□□ 1.25
SHMT2-225ENST00000556798 VSIG10Q8N0Z9 540 aa22.87■■□□□ 1.25
SHMT2-225ENST00000556798 C4AP0C0L4 1744 aa22.87■■□□□ 1.25
SHMT2-225ENST00000556798 PNPLA7Q6ZV29 1317 aa22.86■■□□□ 1.25
SHMT2-225ENST00000556798 PRAMEF22A3QJZ6 481 aa22.86■■□□□ 1.25
SHMT2-225ENST00000556798 GNPATO15228 680 aa22.86■■□□□ 1.25
SHMT2-225ENST00000556798 CCDC27Q2M243 656 aa22.86■■□□□ 1.25
SHMT2-225ENST00000556798 AMIGO3Q86WK7 504 aa22.86■■□□□ 1.25
SHMT2-225ENST00000556798 CNTNAP4Q9C0A0 1308 aa22.85■■□□□ 1.25
SHMT2-225ENST00000556798 CRKLP46109 303 aaKnown RBP22.85■■□□□ 1.25
SHMT2-225ENST00000556798 WWC1Q8IX03 1113 aa22.85■■□□□ 1.25
SHMT2-225ENST00000556798 PHF14O94880 888 aa22.84■■□□□ 1.25
SHMT2-225ENST00000556798 CYP19A1P11511 503 aaPredicted RBP22.84■■□□□ 1.25
SHMT2-225ENST00000556798 HMGB2P26583 209 aaKnown RBP22.84■■□□□ 1.25
SHMT2-225ENST00000556798 EIF4A1P60842 406 aaKnown RBP22.84■■□□□ 1.25
SHMT2-225ENST00000556798 CHL1O00533 1208 aa22.83■■□□□ 1.25
SHMT2-225ENST00000556798 CALD1Q05682 793 aaKnown RBP22.82■■□□□ 1.24
SHMT2-225ENST00000556798 CFAP44Q96MT7 982 aa22.82■■□□□ 1.24
SHMT2-225ENST00000556798 BABAM1Q9NWV8 329 aa22.82■■□□□ 1.24
SHMT2-225ENST00000556798 SNRPA1P09661 255 aaKnown RBP22.81■■□□□ 1.24
SHMT2-225ENST00000556798 NCBP3Q53F19 620 aaKnown RBP22.81■■□□□ 1.24
SHMT2-225ENST00000556798 RC3H1Q5TC82 1133 aaKnown RBP22.81■■□□□ 1.24
SHMT2-225ENST00000556798 INTS5Q6P9B9 1019 aaKnown RBP22.81■■□□□ 1.24
SHMT2-225ENST00000556798 MBIPQ9NS73 344 aa22.81■■□□□ 1.24
SHMT2-225ENST00000556798 CCDC87Q9NVE4 849 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms