RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CALD1Q05682 793 aaKnown RBP18.35■□□□□ 0.53
VIPAS39-208ENST00000556412 NGEFQ8N5V2 710 aa18.35■□□□□ 0.53
VIPAS39-208ENST00000556412 MRC1P22897 1456 aa18.34■□□□□ 0.53
VIPAS39-208ENST00000556412 UPF1Q92900 1129 aaKnown RBP eCLIP18.34■□□□□ 0.53
VIPAS39-208ENST00000556412 TTC5Q8N0Z6 440 aa18.33■□□□□ 0.53
VIPAS39-208ENST00000556412 ATG3Q9NT62 314 aa18.33■□□□□ 0.53
VIPAS39-208ENST00000556412 NHSQ6T4R5 1651 aa18.33■□□□□ 0.53
VIPAS39-208ENST00000556412 NCBP3Q53F19 620 aaKnown RBP18.33■□□□□ 0.52
VIPAS39-208ENST00000556412 TSPYL4Q9UJ04 414 aa18.33■□□□□ 0.52
VIPAS39-208ENST00000556412 PALLDQ8WX93 1383 aa18.32■□□□□ 0.52
VIPAS39-208ENST00000556412 PTCD1O75127 700 aaKnown RBP18.32■□□□□ 0.52
VIPAS39-208ENST00000556412 CCDC125Q86Z20 511 aa18.32■□□□□ 0.52
VIPAS39-208ENST00000556412 SMARCC1Q92922 1105 aaPredicted RBP18.32■□□□□ 0.52
VIPAS39-208ENST00000556412 ADAMTS7Q9UKP4 1686 aa18.32■□□□□ 0.52
VIPAS39-208ENST00000556412 BAG6P46379 1132 aa18.31■□□□□ 0.52
VIPAS39-208ENST00000556412 DEFB132Q7Z7B7 95 aa18.31■□□□□ 0.52
VIPAS39-208ENST00000556412 RBM42Q9BTD8 480 aaKnown RBP18.31■□□□□ 0.52
VIPAS39-208ENST00000556412 KCNQ3O43525 872 aa18.3■□□□□ 0.52
VIPAS39-208ENST00000556412 EN1Q05925 392 aaPredicted RBP18.3■□□□□ 0.52
VIPAS39-208ENST00000556412 ZNF790Q6PG37 636 aa18.3■□□□□ 0.52
VIPAS39-208ENST00000556412 WDR63Q8IWG1 891 aa18.3■□□□□ 0.52
VIPAS39-208ENST00000556412 SCN11AQ9UI33 1791 aa18.29■□□□□ 0.52
VIPAS39-208ENST00000556412 GNAI1P63096 354 aa18.29■□□□□ 0.52
VIPAS39-208ENST00000556412 CFAP44Q96MT7 982 aa18.29■□□□□ 0.52
VIPAS39-208ENST00000556412 IFT57Q9NWB7 429 aa18.29■□□□□ 0.52
VIPAS39-208ENST00000556412 DLG5Q8TDM6 1919 aa18.28■□□□□ 0.52
VIPAS39-208ENST00000556412 ZNF521Q96K83 1311 aa18.28■□□□□ 0.52
VIPAS39-208ENST00000556412 KCNQ4P56696 695 aa18.28■□□□□ 0.52
VIPAS39-208ENST00000556412 TSR2Q969E8 191 aaKnown RBP18.28■□□□□ 0.52
VIPAS39-208ENST00000556412 MBIPQ9NS73 344 aa18.28■□□□□ 0.52
VIPAS39-208ENST00000556412 CHL1O00533 1208 aa18.27■□□□□ 0.52
VIPAS39-208ENST00000556412 PLSCR1O15162 318 aa18.27■□□□□ 0.52
VIPAS39-208ENST00000556412 GOLGA2Q08379 1002 aa18.27■□□□□ 0.52
VIPAS39-208ENST00000556412 EZH2Q15910 746 aaKnown RBP18.27■□□□□ 0.52
VIPAS39-208ENST00000556412 ZNF496Q96IT1 587 aaPredicted RBP18.27■□□□□ 0.52
VIPAS39-208ENST00000556412 CCNL1Q9UK58 526 aaPredicted RBP18.27■□□□□ 0.52
VIPAS39-208ENST00000556412 LOC102724428A0A0B4J2F2 783 aa18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 SIK1P57059 783 aa18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 SPINK5Q9NQ38 1064 aaPredicted RBP18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 IL16Q14005 1332 aa18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 ZNF853P0CG23 659 aa18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 TXNRD1Q16881 649 aa18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 FMNL2Q96PY5 1086 aa18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 BABAM1Q9NWV8 329 aa18.26■□□□□ 0.51
VIPAS39-208ENST00000556412 SBF2Q86WG5 1849 aa18.25■□□□□ 0.51
VIPAS39-208ENST00000556412 ATP6V1AP38606 617 aa18.25■□□□□ 0.51
VIPAS39-208ENST00000556412 BTAF1O14981 1849 aa18.24■□□□□ 0.51
VIPAS39-208ENST00000556412 CDCA7LQ96GN5 454 aa18.24■□□□□ 0.51
VIPAS39-208ENST00000556412 CAMKK2Q96RR4 588 aa18.24■□□□□ 0.51
VIPAS39-208ENST00000556412 MYH16Q9H6N6 1097 aa18.24■□□□□ 0.51
VIPAS39-208ENST00000556412 ZBED9Q6R2W3 1325 aa18.24■□□□□ 0.51
VIPAS39-208ENST00000556412 TNS1Q9HBL0 1735 aaKnown RBP18.24■□□□□ 0.51
VIPAS39-208ENST00000556412 ITGB4P16144 1822 aa18.23■□□□□ 0.51
VIPAS39-208ENST00000556412 EIF4A1P60842 406 aaKnown RBP18.23■□□□□ 0.51
VIPAS39-208ENST00000556412 PROM2Q8N271 834 aa18.23■□□□□ 0.51
VIPAS39-208ENST00000556412 SLC4A9Q96Q91 983 aa18.23■□□□□ 0.51
VIPAS39-208ENST00000556412 FANCIQ9NVI1 1328 aa18.23■□□□□ 0.51
VIPAS39-208ENST00000556412 E9PSI1 815 aa18.22■□□□□ 0.51
VIPAS39-208ENST00000556412 KRT24Q2M2I5 525 aa18.22■□□□□ 0.51
VIPAS39-208ENST00000556412 LRRC4BQ9NT99 713 aa18.22■□□□□ 0.51
VIPAS39-208ENST00000556412 HEG1Q9ULI3 1381 aa18.22■□□□□ 0.51
VIPAS39-208ENST00000556412 SLC27A3Q5K4L6 730 aa18.21■□□□□ 0.51
VIPAS39-208ENST00000556412 KCPQ6ZWJ8 1503 aa18.21■□□□□ 0.51
VIPAS39-208ENST00000556412 PRAMEF22A3QJZ6 481 aa18.21■□□□□ 0.51
VIPAS39-208ENST00000556412 ELL2O00472 640 aaPredicted RBP18.21■□□□□ 0.51
VIPAS39-208ENST00000556412 ITPK1Q13572 414 aa18.21■□□□□ 0.51
VIPAS39-208ENST00000556412 DNAJC10Q8IXB1 793 aa18.21■□□□□ 0.51
VIPAS39-208ENST00000556412 KAT6BQ8WYB5 2073 aa18.21■□□□□ 0.5
VIPAS39-208ENST00000556412 SNRPA1P09661 255 aaKnown RBP18.2■□□□□ 0.5
VIPAS39-208ENST00000556412 SOCS7O14512 581 aa18.19■□□□□ 0.5
VIPAS39-208ENST00000556412 SLFN5Q08AF3 891 aa18.19■□□□□ 0.5
VIPAS39-208ENST00000556412 SIPA1L3O60292 1781 aaPredicted RBP18.19■□□□□ 0.5
VIPAS39-208ENST00000556412 PAPPAQ13219 1627 aa18.19■□□□□ 0.5
VIPAS39-208ENST00000556412 VSIG10Q8N0Z9 540 aa18.19■□□□□ 0.5
VIPAS39-208ENST00000556412 GIGYF1O75420 1035 aaPredicted RBP18.18■□□□□ 0.5
VIPAS39-208ENST00000556412 LINC00116Q8NCU8 138 aa18.18■□□□□ 0.5
VIPAS39-208ENST00000556412 EXOSC9Q06265 439 aaKnown RBP18.17■□□□□ 0.5
VIPAS39-208ENST00000556412 C8orf58Q8NAV2 365 aa18.17■□□□□ 0.5
VIPAS39-208ENST00000556412 VIRMAQ69YN4 1812 aaKnown RBP18.17■□□□□ 0.5
VIPAS39-208ENST00000556412 EIF2S2P20042 333 aaKnown RBP18.16■□□□□ 0.5
VIPAS39-208ENST00000556412 DUSP27Q5VZP5 1158 aa18.16■□□□□ 0.5
VIPAS39-208ENST00000556412 NECTIN2Q92692 538 aa18.16■□□□□ 0.5
VIPAS39-208ENST00000556412 USP16Q9Y5T5 823 aa18.16■□□□□ 0.5
VIPAS39-208ENST00000556412 STARD3NLO95772 234 aa18.16■□□□□ 0.5
VIPAS39-208ENST00000556412 TSPYL6Q8N831 410 aa18.16■□□□□ 0.5
VIPAS39-208ENST00000556412 TEX13AQ9BXU3 409 aaPredicted RBP18.16■□□□□ 0.5
VIPAS39-208ENST00000556412 KDM3BQ7LBC6 1761 aa18.15■□□□□ 0.5
VIPAS39-208ENST00000556412 CYP19A1P11511 503 aaPredicted RBP18.14■□□□□ 0.5
VIPAS39-208ENST00000556412 TWISTNBQ3B726 338 aaPredicted RBP18.14■□□□□ 0.5
VIPAS39-208ENST00000556412 AK7Q96M32 723 aa18.14■□□□□ 0.5
VIPAS39-208ENST00000556412 CRKLP46109 303 aaKnown RBP18.14■□□□□ 0.49
VIPAS39-208ENST00000556412 PIP4K2AP48426 406 aaPredicted RBP18.13■□□□□ 0.49
VIPAS39-208ENST00000556412 HDGFL1Q5TGJ6 251 aa18.13■□□□□ 0.49
VIPAS39-208ENST00000556412 GNPATO15228 680 aa18.12■□□□□ 0.49
VIPAS39-208ENST00000556412 A1BGP04217 495 aa18.12■□□□□ 0.49
VIPAS39-208ENST00000556412 CANXP27824 592 aaKnown RBP18.12■□□□□ 0.49
VIPAS39-208ENST00000556412 ZNF827Q17R98 1081 aa18.12■□□□□ 0.49
VIPAS39-208ENST00000556412 NBPF14Q5TI25 921 aa18.12■□□□□ 0.49
VIPAS39-208ENST00000556412 ANO8Q9HCE9 1232 aaPredicted RBP18.12■□□□□ 0.49
VIPAS39-208ENST00000556412 STK32BQ9NY57 414 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms