RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 CYP27B1O15528 508 aa13.02□□□□□ -0.33
SRP54-210ENST00000556380 IFNL1Q8IU54 200 aa13.02□□□□□ -0.33
SRP54-210ENST00000556380 BCL11BQ9C0K0 894 aaPredicted RBP13.02□□□□□ -0.33
SRP54-210ENST00000556380 PLEKHG2Q9H7P9 1386 aa13.02□□□□□ -0.33
SRP54-210ENST00000556380 KCNQ2O43526 872 aa13.01□□□□□ -0.33
SRP54-210ENST00000556380 RALBP1Q15311 655 aa13.01□□□□□ -0.33
SRP54-210ENST00000556380 SULT6B1Q6IMI4 303 aa13.01□□□□□ -0.33
SRP54-210ENST00000556380 CAMKK2Q96RR4 588 aa13.01□□□□□ -0.33
SRP54-210ENST00000556380 RGPD1P0DJD0 1748 aa13.01□□□□□ -0.33
SRP54-210ENST00000556380 SF3B2Q13435 895 aaKnown RBP13□□□□□ -0.33
SRP54-210ENST00000556380 NKX1-1Q15270 411 aaPredicted RBP13□□□□□ -0.33
SRP54-210ENST00000556380 OTUD5Q96G74 571 aa13□□□□□ -0.33
SRP54-210ENST00000556380 TTLL13PA6NNM8 815 aa12.99□□□□□ -0.33
SRP54-210ENST00000556380 APBA3O96018 575 aa12.99□□□□□ -0.33
SRP54-210ENST00000556380 PYGBP11216 843 aa12.99□□□□□ -0.33
SRP54-210ENST00000556380 EN1Q05925 392 aaPredicted RBP12.99□□□□□ -0.33
SRP54-210ENST00000556380 SPG7Q9UQ90 795 aa12.99□□□□□ -0.33
SRP54-210ENST00000556380 SHANK3Q9BYB0 1731 aa12.99□□□□□ -0.33
SRP54-210ENST00000556380 PCDH11XQ9BZA7 1347 aa12.98□□□□□ -0.33
SRP54-210ENST00000556380 PCDH11YQ9BZA8 1340 aa12.98□□□□□ -0.33
SRP54-210ENST00000556380 BAG6P46379 1132 aa12.98□□□□□ -0.33
SRP54-210ENST00000556380 ACSBG1Q96GR2 724 aa12.98□□□□□ -0.33
SRP54-210ENST00000556380 CFAP53Q96M91 514 aa12.98□□□□□ -0.33
SRP54-210ENST00000556380 TNS1Q9HBL0 1735 aaKnown RBP12.97□□□□□ -0.33
SRP54-210ENST00000556380 PLSCR1O15162 318 aa12.97□□□□□ -0.33
SRP54-210ENST00000556380 HMOX1P09601 288 aa12.97□□□□□ -0.33
SRP54-210ENST00000556380 PHKG2P15735 406 aa12.97□□□□□ -0.33
SRP54-210ENST00000556380 PRIM1P49642 420 aaKnown RBP12.97□□□□□ -0.33
SRP54-210ENST00000556380 AMOTQ4VCS5 1084 aa12.97□□□□□ -0.33
SRP54-210ENST00000556380 PLEKHO1Q53GL0 409 aaPredicted RBP12.97□□□□□ -0.33
SRP54-210ENST00000556380 PRKRIP1Q9H875 184 aaPredicted RBP12.97□□□□□ -0.33
SRP54-210ENST00000556380 SBF2Q86WG5 1849 aa12.97□□□□□ -0.33
SRP54-210ENST00000556380 PKD1L3Q7Z443 1732 aa12.96□□□□□ -0.33
SRP54-210ENST00000556380 EZH2Q15910 746 aaKnown RBP12.96□□□□□ -0.33
SRP54-210ENST00000556380 IFNL2Q8IZJ0 200 aa12.96□□□□□ -0.33
SRP54-210ENST00000556380 MYBBP1AQ9BQG0 1328 aaKnown RBP12.94□□□□□ -0.34
SRP54-210ENST00000556380 U2SURPO15042 1029 aaKnown RBP12.94□□□□□ -0.34
SRP54-210ENST00000556380 IFNLR1Q8IU57 520 aaPredicted RBP12.94□□□□□ -0.34
SRP54-210ENST00000556380 RSPH6AQ9H0K4 717 aa12.94□□□□□ -0.34
SRP54-210ENST00000556380 NUDCQ9Y266 331 aa12.94□□□□□ -0.34
SRP54-210ENST00000556380 NHSQ6T4R5 1651 aa12.93□□□□□ -0.34
SRP54-210ENST00000556380 POTEJP0CG39 1038 aa12.93□□□□□ -0.34
SRP54-210ENST00000556380 ZNF530Q6P9A1 599 aaPredicted RBP12.93□□□□□ -0.34
SRP54-210ENST00000556380 POTEFA5A3E0 1075 aa12.92□□□□□ -0.34
SRP54-210ENST00000556380 FCHSD2O94868 740 aa12.92□□□□□ -0.34
SRP54-210ENST00000556380 GSE1Q14687 1217 aa12.92□□□□□ -0.34
SRP54-210ENST00000556380 MTHFSDQ2M296 383 aaKnown RBP12.92□□□□□ -0.34
SRP54-210ENST00000556380 PHACTR3Q96KR7 559 aa12.92□□□□□ -0.34
SRP54-210ENST00000556380 TRIM35Q9UPQ4 493 aa12.92□□□□□ -0.34
SRP54-210ENST00000556380 U2AF1L5P0DN76 240 aaPredicted RBP12.91□□□□□ -0.34
SRP54-210ENST00000556380 U2AF1Q01081 240 aaKnown RBP eCLIP12.91□□□□□ -0.34
SRP54-210ENST00000556380 PIGBQ92521 554 aa12.91□□□□□ -0.34
SRP54-210ENST00000556380 SYTL4Q96C24 671 aaPredicted RBP12.91□□□□□ -0.34
SRP54-210ENST00000556380 DCAF5Q96JK2 942 aa12.91□□□□□ -0.34
SRP54-210ENST00000556380 KDM6AO15550 1401 aaPredicted RBP12.9□□□□□ -0.34
SRP54-210ENST00000556380 ERVV-2B6SEH9 535 aa12.9□□□□□ -0.34
SRP54-210ENST00000556380 HSP90AB1P08238 724 aaKnown RBP12.9□□□□□ -0.34
SRP54-210ENST00000556380 PRKAR2BP31323 418 aa12.9□□□□□ -0.34
SRP54-210ENST00000556380 TXNRD1Q16881 649 aa12.9□□□□□ -0.34
SRP54-210ENST00000556380 AKAP4Q5JQC9 854 aa12.9□□□□□ -0.34
SRP54-210ENST00000556380 TMEM106CQ9BVX2 250 aa12.9□□□□□ -0.34
SRP54-210ENST00000556380 KAT6BQ8WYB5 2073 aa12.9□□□□□ -0.34
SRP54-210ENST00000556380 MPRIPQ6WCQ1 1025 aa12.89□□□□□ -0.35
SRP54-210ENST00000556380 PCDHB8Q9UN66 801 aa12.89□□□□□ -0.35
SRP54-210ENST00000556380 TOGARAM1Q9Y4F4 1720 aa12.88□□□□□ -0.35
SRP54-210ENST00000556380 C1orf141Q5JVX7 400 aa12.88□□□□□ -0.35
SRP54-210ENST00000556380 PLEKHF1Q96S99 279 aa12.88□□□□□ -0.35
SRP54-210ENST00000556380 LGR6Q9HBX8 967 aa12.88□□□□□ -0.35
SRP54-210ENST00000556380 LRRC4BQ9NT99 713 aa12.88□□□□□ -0.35
SRP54-210ENST00000556380 BTAF1O14981 1849 aa12.88□□□□□ -0.35
SRP54-210ENST00000556380 DOT1LQ8TEK3 1739 aa12.88□□□□□ -0.35
SRP54-210ENST00000556380 SRCAPQ6ZRS2 3230 aa12.87□□□□□ -0.35
SRP54-210ENST00000556380 RGPD3A6NKT7 1758 aaPredicted RBP12.87□□□□□ -0.35
SRP54-210ENST00000556380 RGPD4Q7Z3J3 1758 aa12.87□□□□□ -0.35
SRP54-210ENST00000556380 GAS2L2Q8NHY3 880 aa12.87□□□□□ -0.35
SRP54-210ENST00000556380 SPOCK2Q92563 424 aa12.87□□□□□ -0.35
SRP54-210ENST00000556380 COLQQ9Y215 455 aaPredicted RBP12.87□□□□□ -0.35
SRP54-210ENST00000556380 RNMTO43148 476 aaKnown RBP12.86□□□□□ -0.35
SRP54-210ENST00000556380 SEC24BO95487 1268 aa12.86□□□□□ -0.35
SRP54-210ENST00000556380 SLC27A3Q5K4L6 730 aa12.86□□□□□ -0.35
SRP54-210ENST00000556380 ATG3Q9NT62 314 aa12.86□□□□□ -0.35
SRP54-210ENST00000556380 TMOD3Q9NYL9 352 aa12.86□□□□□ -0.35
SRP54-210ENST00000556380 ASAP1Q9ULH1 1129 aa12.86□□□□□ -0.35
SRP54-210ENST00000556380 RREB1Q92766 1687 aa12.86□□□□□ -0.35
SRP54-210ENST00000556380 CCDC184Q52MB2 194 aa12.85□□□□□ -0.35
SRP54-210ENST00000556380 IER5LQ5T953 404 aa12.85□□□□□ -0.35
SRP54-210ENST00000556380 NFATC2IPQ8NCF5 419 aa12.85□□□□□ -0.35
SRP54-210ENST00000556380 IL17REQ8NFR9 667 aa12.85□□□□□ -0.35
SRP54-210ENST00000556380 ANO8Q9HCE9 1232 aaPredicted RBP12.85□□□□□ -0.35
SRP54-210ENST00000556380 CABP4P57796 275 aa12.84□□□□□ -0.35
SRP54-210ENST00000556380 MAMSTRQ6ZN01 415 aa12.84□□□□□ -0.35
SRP54-210ENST00000556380 SMARCC1Q92922 1105 aaPredicted RBP12.84□□□□□ -0.35
SRP54-210ENST00000556380 SLC52A2Q9HAB3 445 aa12.84□□□□□ -0.35
SRP54-210ENST00000556380 ITGB4P16144 1822 aa12.83□□□□□ -0.35
SRP54-210ENST00000556380 PALLDQ8WX93 1383 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 MAP3K5Q99683 1374 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 NUP188Q5SRE5 1749 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 GNAT3A8MTJ3 354 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 ANP32CO43423 234 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 KCNQ4P56696 695 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms