RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 TESK2Q96S53 571 aa15.1■□□□□ 0.01
SYNE2-221ENST00000556342 MEGF6O75095 1541 aa15.1■□□□□ 0.01
SYNE2-221ENST00000556342 SLC39A7Q92504 469 aa15.08■□□□□ 0
SYNE2-221ENST00000556342 COL24A1Q17RW2 1714 aa15.08■□□□□ 0
SYNE2-221ENST00000556342 DOT1LQ8TEK3 1739 aa15.08■□□□□ 0
SYNE2-221ENST00000556342 RTL1A6NKG5 1358 aa15.08■□□□□ 0
SYNE2-221ENST00000556342 ST20-MTHFSA0A0A6YYL1 179 aa15.07■□□□□ 0
SYNE2-221ENST00000556342 NLGN2Q8NFZ4 835 aa15.07■□□□□ 0
SYNE2-221ENST00000556342 CCNL1Q9UK58 526 aaPredicted RBP15.07■□□□□ 0
SYNE2-221ENST00000556342 LY75O60449 1722 aa15.06■□□□□ 0
SYNE2-221ENST00000556342 TMEM106CQ9BVX2 250 aa15.06■□□□□ 0
SYNE2-221ENST00000556342 USP47Q96K76 1375 aa15.06■□□□□ 0
SYNE2-221ENST00000556342 SHANK3Q9BYB0 1731 aa15.06■□□□□ 0
SYNE2-221ENST00000556342 TUBGCP6Q96RT7 1819 aa15.06■□□□□ 0
SYNE2-221ENST00000556342 SLC24A1O60721 1099 aa15.05■□□□□ -0
SYNE2-221ENST00000556342 C7P10643 843 aa15.05■□□□□ -0
SYNE2-221ENST00000556342 RRS1Q15050 365 aaKnown RBP15.05■□□□□ -0
SYNE2-221ENST00000556342 NBPF6Q5VWK0 638 aa15.05■□□□□ -0
SYNE2-221ENST00000556342 NBPF4Q96M43 638 aa15.05■□□□□ -0
SYNE2-221ENST00000556342 CGNL1Q0VF96 1302 aa15.05■□□□□ -0
SYNE2-221ENST00000556342 GIGYF1O75420 1035 aaPredicted RBP15.04■□□□□ -0
SYNE2-221ENST00000556342 COL23A1Q86Y22 540 aaPredicted RBP15.04■□□□□ -0
SYNE2-221ENST00000556342 USHBP1Q8N6Y0 703 aa15.04■□□□□ -0
SYNE2-221ENST00000556342 FYB1O15117 783 aa15.03■□□□□ -0
SYNE2-221ENST00000556342 RAPGEF4Q8WZA2 1011 aa15.03■□□□□ -0
SYNE2-221ENST00000556342 RGPD2P0DJD1 1756 aa15.03■□□□□ -0
SYNE2-221ENST00000556342 SMG6Q86US8 1419 aaKnown RBP15.02■□□□□ -0
SYNE2-221ENST00000556342 YBX3P16989 372 aaKnown RBP eCLIP15.02■□□□□ -0
SYNE2-221ENST00000556342 GGNBP2Q9H3C7 697 aa15.02■□□□□ -0
SYNE2-221ENST00000556342 METRNQ9UJH8 293 aa15.02■□□□□ -0
SYNE2-221ENST00000556342 GRIN3BO60391 1043 aa15.01□□□□□ -0.01
SYNE2-221ENST00000556342 TATP17735 454 aaPredicted RBP15.01□□□□□ -0.01
SYNE2-221ENST00000556342 MSL1Q68DK7 614 aa15.01□□□□□ -0.01
SYNE2-221ENST00000556342 LHX8Q68G74 356 aa15.01□□□□□ -0.01
SYNE2-221ENST00000556342 TRIM35Q9UPQ4 493 aa15.01□□□□□ -0.01
SYNE2-221ENST00000556342 PCDH11XQ9BZA7 1347 aa15□□□□□ -0.01
SYNE2-221ENST00000556342 PCDH11YQ9BZA8 1340 aa15□□□□□ -0.01
SYNE2-221ENST00000556342 INSRP06213 1382 aa14.99□□□□□ -0.01
SYNE2-221ENST00000556342 PALLDQ8WX93 1383 aa14.99□□□□□ -0.01
SYNE2-221ENST00000556342 HSP90AB2PQ58FF8 381 aa14.99□□□□□ -0.01
SYNE2-221ENST00000556342 CEP350Q5VT06 3117 aa14.99□□□□□ -0.01
SYNE2-221ENST00000556342 HMGB2P26583 209 aaKnown RBP14.98□□□□□ -0.01
SYNE2-221ENST00000556342 TMF1P82094 1093 aa14.98□□□□□ -0.01
SYNE2-221ENST00000556342 FLAD1Q8NFF5 587 aa14.98□□□□□ -0.01
SYNE2-221ENST00000556342 FLT4P35916 1363 aa14.98□□□□□ -0.01
SYNE2-221ENST00000556342 KIF24Q5T7B8 1368 aa14.98□□□□□ -0.01
SYNE2-221ENST00000556342 PDAP1Q13442 181 aaKnown RBP14.97□□□□□ -0.01
SYNE2-221ENST00000556342 IER5LQ5T953 404 aa14.97□□□□□ -0.01
SYNE2-221ENST00000556342 MPRIPQ6WCQ1 1025 aa14.97□□□□□ -0.01
SYNE2-221ENST00000556342 CD2APQ9Y5K6 639 aa14.97□□□□□ -0.01
SYNE2-221ENST00000556342 CYP27B1O15528 508 aa14.96□□□□□ -0.01
SYNE2-221ENST00000556342 PSEN1P49768 467 aa14.96□□□□□ -0.01
SYNE2-221ENST00000556342 C5P01031 1676 aa14.96□□□□□ -0.01
SYNE2-221ENST00000556342 ATP10DQ9P241 1426 aa14.94□□□□□ -0.02
SYNE2-221ENST00000556342 SMARCC1Q92922 1105 aaPredicted RBP14.94□□□□□ -0.02
SYNE2-221ENST00000556342 AK7Q96M32 723 aa14.94□□□□□ -0.02
SYNE2-221ENST00000556342 CDCA8Q53HL2 280 aa14.93□□□□□ -0.02
SYNE2-221ENST00000556342 AMIGO3Q86WK7 504 aa14.93□□□□□ -0.02
SYNE2-221ENST00000556342 EMILIN1Q9Y6C2 1016 aa14.93□□□□□ -0.02
SYNE2-221ENST00000556342 NCAPD2Q15021 1401 aa14.92□□□□□ -0.02
SYNE2-221ENST00000556342 PIGBQ92521 554 aa14.92□□□□□ -0.02
SYNE2-221ENST00000556342 C4BP0C0L5 1744 aa14.92□□□□□ -0.02
SYNE2-221ENST00000556342 TOGARAM1Q9Y4F4 1720 aa14.92□□□□□ -0.02
SYNE2-221ENST00000556342 NSD3Q9BZ95 1437 aa14.92□□□□□ -0.02
SYNE2-221ENST00000556342 ADCY9O60503 1353 aa14.91□□□□□ -0.02
SYNE2-221ENST00000556342 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.91□□□□□ -0.02
SYNE2-221ENST00000556342 PHF14O94880 888 aa14.91□□□□□ -0.02
SYNE2-221ENST00000556342 NKX1-1Q15270 411 aaPredicted RBP14.91□□□□□ -0.02
SYNE2-221ENST00000556342 RNF25Q96BH1 459 aaPredicted RBP14.91□□□□□ -0.02
SYNE2-221ENST00000556342 CARD14Q9BXL6 1004 aa14.91□□□□□ -0.02
SYNE2-221ENST00000556342 TAF1LQ8IZX4 1826 aa14.91□□□□□ -0.02
SYNE2-221ENST00000556342 KIF20BQ96Q89 1820 aa14.9□□□□□ -0.02
SYNE2-221ENST00000556342 PKD1L3Q7Z443 1732 aa14.9□□□□□ -0.02
SYNE2-221ENST00000556342 RIOK3O14730 519 aaKnown RBP14.9□□□□□ -0.02
SYNE2-221ENST00000556342 ECM2O94769 699 aaPredicted RBP14.9□□□□□ -0.02
SYNE2-221ENST00000556342 SMIM5Q71RC9 77 aa14.9□□□□□ -0.02
SYNE2-221ENST00000556342 GPBP1L1Q9HC44 474 aaPredicted RBP14.9□□□□□ -0.02
SYNE2-221ENST00000556342 LOC102724428A0A0B4J2F2 783 aa14.89□□□□□ -0.03
SYNE2-221ENST00000556342 SSFA2P28290 1259 aa14.89□□□□□ -0.03
SYNE2-221ENST00000556342 SIK1P57059 783 aa14.89□□□□□ -0.03
SYNE2-221ENST00000556342 SPG7Q9UQ90 795 aa14.89□□□□□ -0.03
SYNE2-221ENST00000556342 IGSF1Q8N6C5 1336 aa14.89□□□□□ -0.03
SYNE2-221ENST00000556342 PPM1GO15355 546 aaPredicted RBP14.88□□□□□ -0.03
SYNE2-221ENST00000556342 LINC00116Q8NCU8 138 aa14.88□□□□□ -0.03
SYNE2-221ENST00000556342 ITGB4P16144 1822 aa14.87□□□□□ -0.03
SYNE2-221ENST00000556342 POTEFA5A3E0 1075 aa14.87□□□□□ -0.03
SYNE2-221ENST00000556342 POTEB2H3BUK9 544 aa14.87□□□□□ -0.03
SYNE2-221ENST00000556342 EYA1Q99502 592 aa14.87□□□□□ -0.03
SYNE2-221ENST00000556342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.87□□□□□ -0.03
SYNE2-221ENST00000556342 WASHC2AQ641Q2 1341 aa14.87□□□□□ -0.03
SYNE2-221ENST00000556342 UBR3Q6ZT12 1888 aa14.86□□□□□ -0.03
SYNE2-221ENST00000556342 ITPK1Q13572 414 aa14.86□□□□□ -0.03
SYNE2-221ENST00000556342 ZNF526Q8TF50 670 aaPredicted RBP14.86□□□□□ -0.03
SYNE2-221ENST00000556342 TMOD3Q9NYL9 352 aa14.86□□□□□ -0.03
SYNE2-221ENST00000556342 WWC3Q9ULE0 1092 aa14.86□□□□□ -0.03
SYNE2-221ENST00000556342 ASAP1Q9ULH1 1129 aa14.86□□□□□ -0.03
SYNE2-221ENST00000556342 MAP2P11137 1827 aaKnown RBP14.85□□□□□ -0.03
SYNE2-221ENST00000556342 GNPATO15228 680 aa14.85□□□□□ -0.03
SYNE2-221ENST00000556342 SEC24BO95487 1268 aa14.85□□□□□ -0.03
SYNE2-221ENST00000556342 IFFO2Q5TF58 517 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms