RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ZBTB7AO95365 584 aa18.35■□□□□ 0.53
SHMT2-219ENST00000555563 SPON1Q9HCB6 807 aa18.35■□□□□ 0.53
SHMT2-219ENST00000555563 PPP1R1BQ9UD71 204 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-219ENST00000555563 PNPLA7Q6ZV29 1317 aa18.34■□□□□ 0.53
SHMT2-219ENST00000555563 MYBBP1AQ9BQG0 1328 aaKnown RBP18.34■□□□□ 0.53
SHMT2-219ENST00000555563 RNMTO43148 476 aaKnown RBP18.34■□□□□ 0.53
SHMT2-219ENST00000555563 GAS2L2Q8NHY3 880 aa18.34■□□□□ 0.53
SHMT2-219ENST00000555563 PHACTR3Q96KR7 559 aa18.34■□□□□ 0.53
SHMT2-219ENST00000555563 LGR6Q9HBX8 967 aa18.34■□□□□ 0.53
SHMT2-219ENST00000555563 TFCP2L1Q9NZI6 479 aa18.34■□□□□ 0.53
SHMT2-219ENST00000555563 YY1P25490 414 aa18.33■□□□□ 0.52
SHMT2-219ENST00000555563 NFATC2IPQ8NCF5 419 aa18.33■□□□□ 0.52
SHMT2-219ENST00000555563 DCAF8L1A6NGE4 600 aa18.32■□□□□ 0.52
SHMT2-219ENST00000555563 FCHSD2O94868 740 aa18.32■□□□□ 0.52
SHMT2-219ENST00000555563 ITPK1Q13572 414 aa18.32■□□□□ 0.52
SHMT2-219ENST00000555563 SLC52A2Q9HAB3 445 aa18.32■□□□□ 0.52
SHMT2-219ENST00000555563 COL5A3P25940 1745 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-219ENST00000555563 CICQ96RK0 1608 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-219ENST00000555563 LINC00116Q8NCU8 138 aa18.31■□□□□ 0.52
SHMT2-219ENST00000555563 SIPA1L3O60292 1781 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-219ENST00000555563 TJP1Q07157 1748 aa18.31■□□□□ 0.52
SHMT2-219ENST00000555563 UBR3Q6ZT12 1888 aa18.31■□□□□ 0.52
SHMT2-219ENST00000555563 ZNF316A6NFI3 1004 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-219ENST00000555563 ATP6V1AP38606 617 aa18.3■□□□□ 0.52
SHMT2-219ENST00000555563 SLC4A9Q96Q91 983 aa18.3■□□□□ 0.52
SHMT2-219ENST00000555563 MTFR1LQ9H019 292 aa18.3■□□□□ 0.52
SHMT2-219ENST00000555563 GNAT3A8MTJ3 354 aa18.29■□□□□ 0.52
SHMT2-219ENST00000555563 RBM42Q9BTD8 480 aaKnown RBP18.29■□□□□ 0.52
SHMT2-219ENST00000555563 PRKRIP1Q9H875 184 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-219ENST00000555563 ATF5Q9Y2D1 282 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-219ENST00000555563 KCPQ6ZWJ8 1503 aa18.28■□□□□ 0.52
SHMT2-219ENST00000555563 UBR2Q8IWV8 1755 aa18.28■□□□□ 0.52
SHMT2-219ENST00000555563 HMGB2P26583 209 aaKnown RBP18.28■□□□□ 0.52
SHMT2-219ENST00000555563 PTGER2P43116 358 aa18.28■□□□□ 0.52
SHMT2-219ENST00000555563 AK7Q96M32 723 aa18.28■□□□□ 0.52
SHMT2-219ENST00000555563 COL24A1Q17RW2 1714 aa18.28■□□□□ 0.52
SHMT2-219ENST00000555563 PTCD1O75127 700 aaKnown RBP18.27■□□□□ 0.52
SHMT2-219ENST00000555563 AMIGO3Q86WK7 504 aa18.27■□□□□ 0.52
SHMT2-219ENST00000555563 IL17REQ8NFR9 667 aa18.27■□□□□ 0.52
SHMT2-219ENST00000555563 CEMIPQ8WUJ3 1361 aa18.27■□□□□ 0.51
SHMT2-219ENST00000555563 COL23A1Q86Y22 540 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-219ENST00000555563 SLC16A10Q8TF71 515 aa18.25■□□□□ 0.51
SHMT2-219ENST00000555563 PLEKHF1Q96S99 279 aa18.25■□□□□ 0.51
SHMT2-219ENST00000555563 SGIP1Q9BQI5 828 aa18.25■□□□□ 0.51
SHMT2-219ENST00000555563 DLG5Q8TDM6 1919 aa18.25■□□□□ 0.51
SHMT2-219ENST00000555563 GNPATO15228 680 aa18.24■□□□□ 0.51
SHMT2-219ENST00000555563 MSH5O43196 834 aa18.24■□□□□ 0.51
SHMT2-219ENST00000555563 TEFQ10587 303 aa18.24■□□□□ 0.51
SHMT2-219ENST00000555563 SLC39A6Q13433 755 aa18.24■□□□□ 0.51
SHMT2-219ENST00000555563 SMIM5Q71RC9 77 aa18.24■□□□□ 0.51
SHMT2-219ENST00000555563 PHF14O94880 888 aa18.23■□□□□ 0.51
SHMT2-219ENST00000555563 CNTNAP4Q9C0A0 1308 aa18.23■□□□□ 0.51
SHMT2-219ENST00000555563 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.22■□□□□ 0.51
SHMT2-219ENST00000555563 NEFMP07197 916 aa18.22■□□□□ 0.51
SHMT2-219ENST00000555563 FLAD1Q8NFF5 587 aa18.22■□□□□ 0.51
SHMT2-219ENST00000555563 MYH14Q7Z406 1995 aaKnown RBP18.21■□□□□ 0.51
SHMT2-219ENST00000555563 SSFA2P28290 1259 aa18.21■□□□□ 0.51
SHMT2-219ENST00000555563 MCM10Q7L590 875 aa18.21■□□□□ 0.51
SHMT2-219ENST00000555563 RTF1Q92541 710 aaKnown RBP18.21■□□□□ 0.51
SHMT2-219ENST00000555563 MAPK8IP3Q9UPT6 1336 aa18.21■□□□□ 0.51
SHMT2-219ENST00000555563 C4AP0C0L4 1744 aa18.2■□□□□ 0.5
SHMT2-219ENST00000555563 DCTN1Q14203 1278 aa18.2■□□□□ 0.5
SHMT2-219ENST00000555563 MSL1Q68DK7 614 aa18.2■□□□□ 0.5
SHMT2-219ENST00000555563 CRKLP46109 303 aaKnown RBP18.19■□□□□ 0.5
SHMT2-219ENST00000555563 NFE2L2Q16236 605 aa18.19■□□□□ 0.5
SHMT2-219ENST00000555563 RC3H1Q5TC82 1133 aaKnown RBP18.19■□□□□ 0.5
SHMT2-219ENST00000555563 DNAJC10Q8IXB1 793 aa18.19■□□□□ 0.5
SHMT2-219ENST00000555563 TTC5Q8N0Z6 440 aa18.19■□□□□ 0.5
SHMT2-219ENST00000555563 PNNQ9H307 717 aaKnown RBP18.19■□□□□ 0.5
SHMT2-219ENST00000555563 HTATSF1O43719 755 aaKnown RBP18.18■□□□□ 0.5
SHMT2-219ENST00000555563 ZNF790Q6PG37 636 aa18.18■□□□□ 0.5
SHMT2-219ENST00000555563 RTCBQ9Y3I0 505 aaKnown RBP18.18■□□□□ 0.5
SHMT2-219ENST00000555563 POLD1P28340 1107 aa18.17■□□□□ 0.5
SHMT2-219ENST00000555563 WDR43Q15061 677 aaKnown RBP eCLIP18.17■□□□□ 0.5
SHMT2-219ENST00000555563 ZNF496Q96IT1 587 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-219ENST00000555563 ARXQ96QS3 562 aa18.17■□□□□ 0.5
SHMT2-219ENST00000555563 BTBD11A6QL63 1104 aa18.16■□□□□ 0.5
SHMT2-219ENST00000555563 VSIG10Q8N0Z9 540 aa18.16■□□□□ 0.5
SHMT2-219ENST00000555563 HEG1Q9ULI3 1381 aa18.16■□□□□ 0.5
SHMT2-219ENST00000555563 KCNQ3O43525 872 aa18.15■□□□□ 0.5
SHMT2-219ENST00000555563 RPS6KA4O75676 772 aa18.15■□□□□ 0.5
SHMT2-219ENST00000555563 INTS5Q6P9B9 1019 aaKnown RBP18.15■□□□□ 0.5
SHMT2-219ENST00000555563 CCDC146Q8IYE0 955 aa18.15■□□□□ 0.5
SHMT2-219ENST00000555563 FHDC1Q9C0D6 1143 aaPredicted RBP18.15■□□□□ 0.5
SHMT2-219ENST00000555563 KDM3BQ7LBC6 1761 aa18.14■□□□□ 0.5
SHMT2-219ENST00000555563 CYP19A1P11511 503 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-219ENST00000555563 ADRA2BP18089 450 aa18.14■□□□□ 0.49
SHMT2-219ENST00000555563 THUMPD2Q9BTF0 503 aaKnown RBP18.14■□□□□ 0.49
SHMT2-219ENST00000555563 CCDC87Q9NVE4 849 aa18.14■□□□□ 0.49
SHMT2-219ENST00000555563 TRAPPC3LQ5T215 181 aa18.13■□□□□ 0.49
SHMT2-219ENST00000555563 ARHGEF1Q92888 912 aaKnown RBP18.13■□□□□ 0.49
SHMT2-219ENST00000555563 FMNL2Q96PY5 1086 aa18.13■□□□□ 0.49
SHMT2-219ENST00000555563 ADAMTS8Q9UP79 889 aa18.13■□□□□ 0.49
SHMT2-219ENST00000555563 TMPOP42166 694 aaKnown RBP18.11■□□□□ 0.49
SHMT2-219ENST00000555563 CCDC184Q52MB2 194 aa18.11■□□□□ 0.49
SHMT2-219ENST00000555563 SYT17Q9BSW7 474 aa18.11■□□□□ 0.49
SHMT2-219ENST00000555563 ZBTB1Q9Y2K1 713 aa18.11■□□□□ 0.49
SHMT2-219ENST00000555563 SOS1Q07889 1333 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-219ENST00000555563 ANP32CO43423 234 aa18.1■□□□□ 0.49
SHMT2-219ENST00000555563 RIPK4P57078 832 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms