RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 TSR2Q969E8 191 aaKnown RBP18.6■□□□□ 0.57
SHOX2-206ENST00000554685 MBIPQ9NS73 344 aa18.6■□□□□ 0.57
SHOX2-206ENST00000554685 ONECUT3O60422 494 aaPredicted RBP18.59■□□□□ 0.57
SHOX2-206ENST00000554685 SLC52A2Q9HAB3 445 aa18.59■□□□□ 0.57
SHOX2-206ENST00000554685 SCN11AQ9UI33 1791 aa18.59■□□□□ 0.57
SHOX2-206ENST00000554685 THSD7AQ9UPZ6 1657 aa18.59■□□□□ 0.57
SHOX2-206ENST00000554685 CABP4P57796 275 aa18.58■□□□□ 0.56
SHOX2-206ENST00000554685 BTBD11A6QL63 1104 aa18.57■□□□□ 0.56
SHOX2-206ENST00000554685 RBM6P78332 1123 aaKnown RBP18.57■□□□□ 0.56
SHOX2-206ENST00000554685 ZNF428Q96B54 188 aa18.57■□□□□ 0.56
SHOX2-206ENST00000554685 RNF216Q9NWF9 866 aaPredicted RBP18.57■□□□□ 0.56
SHOX2-206ENST00000554685 SOS1Q07889 1333 aaPredicted RBP18.56■□□□□ 0.56
SHOX2-206ENST00000554685 EXOSC9Q06265 439 aaKnown RBP18.56■□□□□ 0.56
SHOX2-206ENST00000554685 RCAN3Q9UKA8 241 aa18.56■□□□□ 0.56
SHOX2-206ENST00000554685 POTEDQ86YR6 584 aa18.54■□□□□ 0.56
SHOX2-206ENST00000554685 CHMP4AQ9BY43 222 aa18.54■□□□□ 0.56
SHOX2-206ENST00000554685 SEPT12Q8IYM1 358 aa18.53■□□□□ 0.56
SHOX2-206ENST00000554685 MARCH10Q8NA82 808 aaPredicted RBP18.53■□□□□ 0.56
SHOX2-206ENST00000554685 NFATC2IPQ8NCF5 419 aa18.53■□□□□ 0.56
SHOX2-206ENST00000554685 TMOD3Q9NYL9 352 aa18.53■□□□□ 0.56
SHOX2-206ENST00000554685 VIRMAQ69YN4 1812 aaKnown RBP18.53■□□□□ 0.56
SHOX2-206ENST00000554685 SIPA1L3O60292 1781 aaPredicted RBP18.53■□□□□ 0.56
SHOX2-206ENST00000554685 TWISTNBQ3B726 338 aaPredicted RBP18.52■□□□□ 0.56
SHOX2-206ENST00000554685 TTC5Q8N0Z6 440 aa18.52■□□□□ 0.56
SHOX2-206ENST00000554685 MIS18AQ9NYP9 233 aa18.52■□□□□ 0.56
SHOX2-206ENST00000554685 KDM3BQ7LBC6 1761 aa18.5■□□□□ 0.55
SHOX2-206ENST00000554685 BCL9O00512 1426 aa18.5■□□□□ 0.55
SHOX2-206ENST00000554685 HOXB7P09629 217 aa18.5■□□□□ 0.55
SHOX2-206ENST00000554685 RXRBP28702 533 aa18.5■□□□□ 0.55
SHOX2-206ENST00000554685 ZNF790Q6PG37 636 aa18.5■□□□□ 0.55
SHOX2-206ENST00000554685 EIF4A1P60842 406 aaKnown RBP18.49■□□□□ 0.55
SHOX2-206ENST00000554685 ALDH1L2Q3SY69 923 aa18.49■□□□□ 0.55
SHOX2-206ENST00000554685 VAMP4O75379 141 aa18.48■□□□□ 0.55
SHOX2-206ENST00000554685 HOXD11P31277 338 aaPredicted RBP18.48■□□□□ 0.55
SHOX2-206ENST00000554685 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.48■□□□□ 0.55
SHOX2-206ENST00000554685 C8orf58Q8NAV2 365 aa18.48■□□□□ 0.55
SHOX2-206ENST00000554685 TOGARAM1Q9Y4F4 1720 aa18.48■□□□□ 0.55
SHOX2-206ENST00000554685 RARSP54136 660 aaKnown RBP18.47■□□□□ 0.55
SHOX2-206ENST00000554685 FMNL2Q96PY5 1086 aa18.47■□□□□ 0.55
SHOX2-206ENST00000554685 TSPYL6Q8N831 410 aa18.46■□□□□ 0.55
SHOX2-206ENST00000554685 SYTL4Q96C24 671 aaPredicted RBP18.46■□□□□ 0.55
SHOX2-206ENST00000554685 SUPT16HQ9Y5B9 1047 aaKnown RBP18.46■□□□□ 0.55
SHOX2-206ENST00000554685 DOT1LQ8TEK3 1739 aa18.46■□□□□ 0.55
SHOX2-206ENST00000554685 ELL2O00472 640 aaPredicted RBP18.45■□□□□ 0.54
SHOX2-206ENST00000554685 PRIM1P49642 420 aaKnown RBP18.45■□□□□ 0.54
SHOX2-206ENST00000554685 SLC39A6Q13433 755 aa18.45■□□□□ 0.54
SHOX2-206ENST00000554685 KRT27Q7Z3Y8 459 aa18.45■□□□□ 0.54
SHOX2-206ENST00000554685 PIGBQ92521 554 aa18.45■□□□□ 0.54
SHOX2-206ENST00000554685 HEG1Q9ULI3 1381 aa18.44■□□□□ 0.54
SHOX2-206ENST00000554685 KCNQ3O43525 872 aa18.44■□□□□ 0.54
SHOX2-206ENST00000554685 NEFLP07196 543 aa18.44■□□□□ 0.54
SHOX2-206ENST00000554685 SMC4Q9NTJ3 1288 aa18.44■□□□□ 0.54
SHOX2-206ENST00000554685 RGS17Q9UGC6 210 aaPredicted RBP18.44■□□□□ 0.54
SHOX2-206ENST00000554685 PAPPAQ13219 1627 aa18.44■□□□□ 0.54
SHOX2-206ENST00000554685 RNF123Q5XPI4 1314 aa18.44■□□□□ 0.54
SHOX2-206ENST00000554685 RRP1P56182 461 aaKnown RBP18.43■□□□□ 0.54
SHOX2-206ENST00000554685 KRT24Q2M2I5 525 aa18.43■□□□□ 0.54
SHOX2-206ENST00000554685 CCDC30Q5VVM6 783 aa18.43■□□□□ 0.54
SHOX2-206ENST00000554685 KIF16BQ96L93 1317 aa18.43■□□□□ 0.54
SHOX2-206ENST00000554685 GIGYF1O75420 1035 aaPredicted RBP18.42■□□□□ 0.54
SHOX2-206ENST00000554685 SNRPA1P09661 255 aaKnown RBP18.42■□□□□ 0.54
SHOX2-206ENST00000554685 BRPF1P55201 1214 aaPredicted RBP18.42■□□□□ 0.54
SHOX2-206ENST00000554685 FAM196AQ6ZSG2 479 aa18.42■□□□□ 0.54
SHOX2-206ENST00000554685 SMARCC1Q92922 1105 aaPredicted RBP18.42■□□□□ 0.54
SHOX2-206ENST00000554685 ACSBG1Q96GR2 724 aa18.42■□□□□ 0.54
SHOX2-206ENST00000554685 STK31Q9BXU1 1019 aa18.42■□□□□ 0.54
SHOX2-206ENST00000554685 ITGB4P16144 1822 aa18.42■□□□□ 0.54
SHOX2-206ENST00000554685 HDGFL1Q5TGJ6 251 aa18.41■□□□□ 0.54
SHOX2-206ENST00000554685 POTEAQ6S8J7 498 aa18.41■□□□□ 0.54
SHOX2-206ENST00000554685 SSH1Q8WYL5 1049 aa18.41■□□□□ 0.54
SHOX2-206ENST00000554685 ZNF496Q96IT1 587 aaPredicted RBP18.41■□□□□ 0.54
SHOX2-206ENST00000554685 BCAR3O75815 825 aa18.4■□□□□ 0.54
SHOX2-206ENST00000554685 CANXP27824 592 aaKnown RBP18.4■□□□□ 0.54
SHOX2-206ENST00000554685 VSIG10Q8N0Z9 540 aa18.4■□□□□ 0.54
SHOX2-206ENST00000554685 ATG3Q9NT62 314 aa18.4■□□□□ 0.54
SHOX2-206ENST00000554685 RGS12O14924 1447 aa18.4■□□□□ 0.54
SHOX2-206ENST00000554685 KCPQ6ZWJ8 1503 aa18.39■□□□□ 0.54
SHOX2-206ENST00000554685 IPO8O15397 1037 aaKnown RBP18.39■□□□□ 0.53
SHOX2-206ENST00000554685 TEX13AQ9BXU3 409 aaPredicted RBP18.39■□□□□ 0.53
SHOX2-206ENST00000554685 ASAP1Q9ULH1 1129 aa18.39■□□□□ 0.53
SHOX2-206ENST00000554685 UBR2Q8IWV8 1755 aa18.39■□□□□ 0.53
SHOX2-206ENST00000554685 NHSQ6T4R5 1651 aa18.38■□□□□ 0.53
SHOX2-206ENST00000554685 MS4A1P11836 297 aa18.38■□□□□ 0.53
SHOX2-206ENST00000554685 BCL2L13Q9BXK5 485 aa18.38■□□□□ 0.53
SHOX2-206ENST00000554685 PTCD1O75127 700 aaKnown RBP18.37■□□□□ 0.53
SHOX2-206ENST00000554685 MRPL50Q8N5N7 158 aaKnown RBP18.37■□□□□ 0.53
SHOX2-206ENST00000554685 EIF2S2P20042 333 aaKnown RBP18.36■□□□□ 0.53
SHOX2-206ENST00000554685 ERBB4Q15303 1308 aa18.36■□□□□ 0.53
SHOX2-206ENST00000554685 ZKSCAN2Q63HK3 967 aa18.36■□□□□ 0.53
SHOX2-206ENST00000554685 RBM42Q9BTD8 480 aaKnown RBP18.36■□□□□ 0.53
SHOX2-206ENST00000554685 KCNQ2O43526 872 aa18.35■□□□□ 0.53
SHOX2-206ENST00000554685 FAM182BQ5T319 152 aa18.35■□□□□ 0.53
SHOX2-206ENST00000554685 ARHGAP45Q92619 1136 aa18.35■□□□□ 0.53
SHOX2-206ENST00000554685 FRAT1Q92837 279 aaPredicted RBP18.35■□□□□ 0.53
SHOX2-206ENST00000554685 BCL11BQ9C0K0 894 aaPredicted RBP18.35■□□□□ 0.53
SHOX2-206ENST00000554685 DBF4Q9UBU7 674 aaPredicted RBP18.35■□□□□ 0.53
SHOX2-206ENST00000554685 BRWD3Q6RI45 1802 aa18.35■□□□□ 0.53
SHOX2-206ENST00000554685 PALLDQ8WX93 1383 aa18.34■□□□□ 0.53
SHOX2-206ENST00000554685 PTPRCP08575 1304 aa18.34■□□□□ 0.53
SHOX2-206ENST00000554685 SLC4A2P04920 1241 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms