RNA–Protein interactions for RNA: ENST00000554178.1

PTPN21-204, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 3

Gene PTPN21, Length 822 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-204	ENST00000554178	MPRIP	Q6WCQ1	1025 aa		13.69	□□□□□ -0.22
PTPN21-204	ENST00000554178	RAPGEF4	Q8WZA2	1011 aa		13.69	□□□□□ -0.22
PTPN21-204	ENST00000554178	COL5A3	P25940	1745 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPN21-204	ENST00000554178	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPN21-204	ENST00000554178	CIC	Q96RK0	1608 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPN21-204	ENST00000554178	IGSF1	Q8N6C5	1336 aa		13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	PCDH11X	Q9BZA7	1347 aa		13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	PCDH11Y	Q9BZA8	1340 aa		13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	ST20-MTHFS	A0A0A6YYL1	179 aa		13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	TAT	P17735	454 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	AK7	Q96M32	723 aa		13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	TESK2	Q96S53	571 aa		13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	VIRMA	Q69YN4	1812 aa	Known RBP	13.67	□□□□□ -0.22
PTPN21-204	ENST00000554178	WDR90	Q96KV7	1748 aa		13.65	□□□□□ -0.22
PTPN21-204	ENST00000554178	HSP90AB2P	Q58FF8	381 aa		13.65	□□□□□ -0.22
PTPN21-204	ENST00000554178	CHADL	Q6NUI6	762 aa		13.65	□□□□□ -0.22
PTPN21-204	ENST00000554178	FLT4	P35916	1363 aa		13.64	□□□□□ -0.23
PTPN21-204	ENST00000554178	CYP27B1	O15528	508 aa		13.64	□□□□□ -0.23
PTPN21-204	ENST00000554178	ARFGEF1	Q9Y6D6	1849 aa		13.64	□□□□□ -0.23
PTPN21-204	ENST00000554178	MYH14	Q7Z406	1995 aa	Known RBP	13.63	□□□□□ -0.23
PTPN21-204	ENST00000554178	INSR	P06213	1382 aa		13.63	□□□□□ -0.23
PTPN21-204	ENST00000554178	CD2AP	Q9Y5K6	639 aa		13.63	□□□□□ -0.23
PTPN21-204	ENST00000554178	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.62	□□□□□ -0.23
PTPN21-204	ENST00000554178	FYB1	O15117	783 aa		13.62	□□□□□ -0.23
PTPN21-204	ENST00000554178	HSPA6	P17066	643 aa		13.62	□□□□□ -0.23
PTPN21-204	ENST00000554178	LINC00116	Q8NCU8	138 aa		13.62	□□□□□ -0.23
PTPN21-204	ENST00000554178	EMILIN1	Q9Y6C2	1016 aa		13.62	□□□□□ -0.23
PTPN21-204	ENST00000554178	NSD3	Q9BZ95	1437 aa		13.62	□□□□□ -0.23
PTPN21-204	ENST00000554178	CGNL1	Q0VF96	1302 aa		13.62	□□□□□ -0.23
PTPN21-204	ENST00000554178	PXDNL	A1KZ92	1463 aa		13.61	□□□□□ -0.23
PTPN21-204	ENST00000554178	PPM1G	O15355	546 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPN21-204	ENST00000554178	PIGB	Q92521	554 aa		13.6	□□□□□ -0.23
PTPN21-204	ENST00000554178	NCAPD2	Q15021	1401 aa		13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	GNPAT	O15228	680 aa		13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	PRR29	P0C7W0	189 aa		13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	FLAD1	Q8NFF5	587 aa		13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	PUS7	Q96PZ0	661 aa	Known RBP	13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	SBF1	O95248	1867 aa		13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	CCDC88A	Q3V6T2	1871 aa		13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	TJP1	Q07157	1748 aa		13.59	□□□□□ -0.23
PTPN21-204	ENST00000554178	ITPK1	Q13572	414 aa		13.58	□□□□□ -0.24
PTPN21-204	ENST00000554178	ZNF831	Q5JPB2	1677 aa		13.57	□□□□□ -0.24
PTPN21-204	ENST00000554178	LOC102724428	A0A0B4J2F2	783 aa		13.57	□□□□□ -0.24
PTPN21-204	ENST00000554178	KIF3C	O14782	793 aa		13.57	□□□□□ -0.24
PTPN21-204	ENST00000554178	SIK1	P57059	783 aa		13.57	□□□□□ -0.24
PTPN21-204	ENST00000554178	SMARCC1	Q92922	1105 aa	Predicted RBP	13.57	□□□□□ -0.24
PTPN21-204	ENST00000554178	ASAP1	Q9ULH1	1129 aa		13.57	□□□□□ -0.24
PTPN21-204	ENST00000554178	C10orf71	Q711Q0	1435 aa		13.56	□□□□□ -0.24
PTPN21-204	ENST00000554178	MMP10	P09238	476 aa		13.56	□□□□□ -0.24
PTPN21-204	ENST00000554178	TMF1	P82094	1093 aa		13.56	□□□□□ -0.24
PTPN21-204	ENST00000554178	TMOD3	Q9NYL9	352 aa		13.56	□□□□□ -0.24
PTPN21-204	ENST00000554178	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.56	□□□□□ -0.24
PTPN21-204	ENST00000554178	TIAM2	Q8IVF5	1701 aa		13.56	□□□□□ -0.24
PTPN21-204	ENST00000554178	AFDN	P55196	1824 aa	Known RBP	13.55	□□□□□ -0.24
PTPN21-204	ENST00000554178	CACNA1S	Q13698	1873 aa		13.55	□□□□□ -0.24
PTPN21-204	ENST00000554178	SSFA2	P28290	1259 aa		13.55	□□□□□ -0.24
PTPN21-204	ENST00000554178	BCS1L	Q9Y276	419 aa		13.55	□□□□□ -0.24
PTPN21-204	ENST00000554178	KDR	P35968	1356 aa		13.55	□□□□□ -0.24
PTPN21-204	ENST00000554178	SCN11A	Q9UI33	1791 aa		13.55	□□□□□ -0.24
PTPN21-204	ENST00000554178	ATP6V1A	P38606	617 aa		13.54	□□□□□ -0.24
PTPN21-204	ENST00000554178	KIF24	Q5T7B8	1368 aa		13.54	□□□□□ -0.24
PTPN21-204	ENST00000554178	CARD14	Q9BXL6	1004 aa		13.53	□□□□□ -0.24
PTPN21-204	ENST00000554178	NMRK2	Q9NPI5	230 aa		13.53	□□□□□ -0.24
PTPN21-204	ENST00000554178	SPG7	Q9UQ90	795 aa		13.53	□□□□□ -0.24
PTPN21-204	ENST00000554178	DLEC1	Q9Y238	1755 aa		13.53	□□□□□ -0.24
PTPN21-204	ENST00000554178		A0A0G2JLW4	131 aa		13.52	□□□□□ -0.25
PTPN21-204	ENST00000554178	ADAMTS7	Q9UKP4	1686 aa		13.52	□□□□□ -0.25
PTPN21-204	ENST00000554178	KCP	Q6ZWJ8	1503 aa		13.51	□□□□□ -0.25
PTPN21-204	ENST00000554178	TNNT2	P45379	298 aa	Predicted RBP	13.51	□□□□□ -0.25
PTPN21-204	ENST00000554178	HTRA3	P83110	453 aa		13.51	□□□□□ -0.25
PTPN21-204	ENST00000554178	EYA1	Q99502	592 aa		13.51	□□□□□ -0.25
PTPN21-204	ENST00000554178	ATG3	Q9NT62	314 aa		13.51	□□□□□ -0.25
PTPN21-204	ENST00000554178	KDM6A	O15550	1401 aa	Predicted RBP	13.5	□□□□□ -0.25
PTPN21-204	ENST00000554178	PHKG2	P15735	406 aa		13.5	□□□□□ -0.25
PTPN21-204	ENST00000554178	NKX1-1	Q15270	411 aa	Predicted RBP	13.5	□□□□□ -0.25
PTPN21-204	ENST00000554178	POLR3GL	Q9BT43	218 aa		13.5	□□□□□ -0.25
PTPN21-204	ENST00000554178	C19orf67	A6NJJ6	358 aa		13.49	□□□□□ -0.25
PTPN21-204	ENST00000554178	DPEP1	P16444	411 aa		13.49	□□□□□ -0.25
PTPN21-204	ENST00000554178	ARHGAP27	Q6ZUM4	889 aa		13.49	□□□□□ -0.25
PTPN21-204	ENST00000554178	SLC4A9	Q96Q91	983 aa		13.49	□□□□□ -0.25
PTPN21-204	ENST00000554178	SPDYE4	A6NLX3	237 aa		13.48	□□□□□ -0.25
PTPN21-204	ENST00000554178	FCHSD2	O94868	740 aa		13.48	□□□□□ -0.25
PTPN21-204	ENST00000554178	IFNL2	Q8IZJ0	200 aa		13.48	□□□□□ -0.25
PTPN21-204	ENST00000554178	RTCB	Q9Y3I0	505 aa	Known RBP	13.48	□□□□□ -0.25
PTPN21-204	ENST00000554178	APLP1	P51693	650 aa		13.47	□□□□□ -0.25
PTPN21-204	ENST00000554178	EIF4A2	Q14240	407 aa	Known RBP	13.47	□□□□□ -0.25
PTPN21-204	ENST00000554178	WASHC2A	Q641Q2	1341 aa		13.46	□□□□□ -0.25
PTPN21-204	ENST00000554178	ARHGEF1	Q92888	912 aa	Known RBP	13.46	□□□□□ -0.25
PTPN21-204	ENST00000554178	SRP68	Q9UHB9	627 aa	Known RBP	13.46	□□□□□ -0.25
PTPN21-204	ENST00000554178	COL11A2	P13942	1736 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	ANKRD31	Q8N7Z5	1873 aa		13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	TOMM70	O94826	608 aa		13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	GYS1	P13807	737 aa		13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	TRAPPC3L	Q5T215	181 aa		13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	C9orf131	Q5VYM1	1079 aa		13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	CCDC87	Q9NVE4	849 aa		13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	POLK	Q9UBT6	870 aa		13.45	□□□□□ -0.26
PTPN21-204	ENST00000554178	HMGB2	P26583	209 aa	Known RBP	13.44	□□□□□ -0.26
PTPN21-204	ENST00000554178	RFC4	P35249	363 aa		13.44	□□□□□ -0.26
PTPN21-204	ENST00000554178	PARP3	Q9Y6F1	533 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms